DK953371
Clone id TST39A01NGRL0017_J13
Library
Length 567
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0017_J13. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
GGAAAAGAGGGCAAGGCTGGAGGAAGCTCATCACCAGCAGCAGAGCCTTGCGCGCTGCGT
GCGGTTAGTAGCTACTAGGCCTCATCGGCATCCCTTTCCGCCCATCAAGACGACCCACTT
GGCATTTGTCCCCGGGATCGCTGCAGGGCTTCAAGTTCACTTTCTTTCTGGTTTAACGCG
GTTTTCGTTGACCAGAGAGAGAGAGAGAGATAGAGAGATAGAGAGAGAGAGAGACTTTTC
TCATTTGAATGTTTCAATTTGTTTATTTGCGGATTCTTCCATCCTTGCATGACGAAGATC
ACAGAGTTTTCCTTTGTGGATTGAGAAAGATTGTTCTCGCACTCTGAGAGAGAGAGAGAG
AGTGCCTGTGGAAATTCAACTACAAAGCCTTCTCTTCGGCAATGACCCCAGCAGGCCCAT
GATGCATGCATTTCGTCCCCAGCATATTCTCTTTTCATGGAGACTACATGCATGCTTTGA
GCAGCTCTACCTAGTGAACGCTATAAATGGGCAACACCTGCGTCACAATCGGGGTCTTTA
CACTAACCGAGGCAGCTTCTTTGGAGG
■■Homology search results ■■ -
sp_hit_id Q9UT43
Definition sp|Q9UT43|YFRD_SCHPO Putative phospholipid-transporting ATPase C821.13c OS=Schizosaccharomyces pombe
Align length 67
Score (bit) 30.4
E-value 6.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK953371|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0017_J13, 5'
(567 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9UT43|YFRD_SCHPO Putative phospholipid-transporting ATPase C... 30 6.4

>sp|Q9UT43|YFRD_SCHPO Putative phospholipid-transporting ATPase
C821.13c OS=Schizosaccharomyces pombe GN=SPAC821.13c PE=1
SV=2
Length = 1562

Score = 30.4 bits (67), Expect = 6.4
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = +2

Query: 248 NVSICLF---ADSSILA*RRSQSFPLWIEKDCSRTLRERERVPVEIQLQSLLFGNDPSRP 418
N ICLF ADS+I+ +R + L KD S T E+ R +EI + SRP
Sbjct: 858 NGRICLFCKGADSAII--KRLRLSNLAKRKDKSVTKAEQARKSIEIDKAIIRNSQSTSRP 915

Query: 419 MMHAFRP 439
+ A RP
Sbjct: 916 SLTASRP 922


tr_hit_id Q93YJ0
Definition tr|Q93YJ0|Q93YJ0_BRARO Reverse transcriptase (Fragment) OS=Brassica rapa subsp. oleifera
Align length 69
Score (bit) 35.8
E-value 1.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK953371|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0017_J13, 5'
(567 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q93YJ0|Q93YJ0_BRARO Reverse transcriptase (Fragment) OS=Brass... 36 1.7
tr|Q590K5|Q590K5_9ROSI Maturase K OS=Phragmotheca ecuadorensis P... 35 2.2
tr|Q8W451|Q8W451_BRAOL Reverse transcriptase (Fragment) OS=Brass... 34 4.9
tr|Q1JT79|Q1JT79_TOXGO Putative uncharacterized protein OS=Toxop... 34 6.5

>tr|Q93YJ0|Q93YJ0_BRARO Reverse transcriptase (Fragment) OS=Brassica
rapa subsp. oleifera GN=RT PE=4 SV=1
Length = 88

Score = 35.8 bits (81), Expect = 1.7
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +3

Query: 261 VYLRILPSLHDEDHRVFLCGLRKIVLAL*ERERECLWKFNYKAFSSAMTPAGP*CMHFVP 440
VY++ P L D++ LC LRK + L R+ W + FS+ + G C H P
Sbjct: 12 VYMKQPPGLEDKEKPHHLCKLRKAIYGL--RQSPRAW---FDKFSTFLLKFGFKCTHGDP 66

Query: 441 SIFSF-HGD 464
S+F + HGD
Sbjct: 67 SLFVYLHGD 75


>tr|Q590K5|Q590K5_9ROSI Maturase K OS=Phragmotheca ecuadorensis PE=3
SV=1
Length = 505

Score = 35.4 bits (80), Expect = 2.2
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 2/112 (1%)
Frame = +2

Query: 236 FSHLNVSICLFADSSILA*RRSQSFPLWIEKDCSRTLRERERVPVEIQLQSLLFGNDPSR 415
FSHLN + + I Q+ W+ KD S R + L+S + P +
Sbjct: 140 FSHLNYVLDVLIPHPIHLEILVQALRYWV-KDASSLHLLRFSLYEYCNLKSFI---TPKK 195

Query: 416 PMMHAFRPQHILFSWRLHAC-FEQLYLVNAINGQHLRH-NRGLYTNRGSFFG 565
+ F P+ LF + HAC +E ++L HLR + G++ R F+G
Sbjct: 196 KSISIFNPRLFLFLYNSHACEYESIFLFLRNQSSHLRSTSSGVFLERIYFYG 247


>tr|Q8W451|Q8W451_BRAOL Reverse transcriptase (Fragment) OS=Brassica
oleracea var. ramosa GN=RT PE=4 SV=1
Length = 87

Score = 34.3 bits (77), Expect = 4.9
Identities = 20/65 (30%), Positives = 32/65 (49%)
Frame = +3

Query: 261 VYLRILPSLHDEDHRVFLCGLRKIVLAL*ERERECLWKFNYKAFSSAMTPAGP*CMHFVP 440
VY+R P D++H ++C L K++ L + R W + FSS + G C P
Sbjct: 12 VYMRQPPGFEDKEHPQYVCNLHKVIYGLKQTPR--AW---FDKFSSFLIEFGFICNSSHP 66

Query: 441 SIFSF 455
S+F +
Sbjct: 67 SLFVY 71


>tr|Q1JT79|Q1JT79_TOXGO Putative uncharacterized protein OS=Toxoplasma
gondii RH GN=TgIa.1430 PE=3 SV=1
Length = 1342

Score = 33.9 bits (76), Expect = 6.5
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +1

Query: 331 LFSHSERERESACGNSTTKPSLRQ*PQQAHDACISSP 441
+ HSE ER+ G ST L Q PQQ +SSP
Sbjct: 931 IHEHSEEERQEETGTSTPADKLSQPPQQERSGSLSSP 967