DK953187
Clone id TST39A01NGRL0017_B19
Library
Length 621
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0017_B19. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
CTGCGCAGAGGATCGCGGCTCACAGAGAGCCATTCAAAATGCAGGTTATCTCGAGGTTAG
TAAATATGGAGAGCACCATTTTGAGGATGGTGCCTTCAGCCCTTGCTTGTTCTCCGCTTG
CTGGTGGAGTTGGACACTCTTCACATTCACTAAATAAGGTGGGCAGAGGGTTCTGTACTG
TTGTTCCAAACAATGCAGCAGCTACCCCCACAGCGGCGGCACAAGACAATCAGGGAACGG
CTTCCCCACAGCAACCTTCAGTGACACCACCTGAAGCGCAGCCGCAGCAACGGAGCTTTT
TTGATGACATGGATTCCTATCCAATGAGTCCCACTGTCAGAAGACGCCCGTACAATCTTG
AAGCTAAAATGCGCATGAAGCAGTATCGCAGGGAGGCCATGCTGCAGAGGCGTCAGCAAG
AGCTTGAAGAGGAGCAAAGGACTTTCCAGCTTGATTATACCACCATATACAAAAAGGGTG
ACCCAGGCACAGTGCAAGGTGTAATCAAAGAGATCATTAATTTGGGTTACATTGTGACTC
TACCCAATGGCAGAGAAGGTCTTTTAGCGGCATCGCACTTAGGATGCTCAGGTGGGATTC
CTTTGTTAGAGCGTCTCTTTA
■■Homology search results ■■ -
sp_hit_id O18141
Definition sp|O18141|NHR79_CAEEL Nuclear hormone receptor family member nhr-79 OS=Caenorhabditis elegans
Align length 62
Score (bit) 34.3
E-value 0.53
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK953187|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0017_B19, 5'
(621 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O18141|NHR79_CAEEL Nuclear hormone receptor family member nhr... 34 0.53
sp|Q30TH2|PNP_SULDN Polyribonucleotide nucleotidyltransferase OS... 32 3.5
sp|Q9HZ71|RS1_PSEAE 30S ribosomal protein S1 OS=Pseudomonas aeru... 30 7.7
sp|Q9NTG1|PKDRE_HUMAN Polycystic kidney disease and receptor for... 30 7.7

>sp|O18141|NHR79_CAEEL Nuclear hormone receptor family member nhr-79
OS=Caenorhabditis elegans GN=nhr-79 PE=1 SV=2
Length = 463

Score = 34.3 bits (77), Expect = 0.53
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Frame = +3

Query: 228 NQGTASPQQPSVTPPEAQPQQRSFFD---------DMDSYPMSPTVRRRPYNLEAKMRMK 380
N +S + +PP QP ++FD +MD YP SP +R+ NL ++
Sbjct: 92 NSRNSSQSEDFFSPPPEQPGPSNYFDQFPWQASENEMDPYPSSPKIRKMSENLMGIDELQ 151

Query: 381 QY 386
Q+
Sbjct: 152 QF 153


>sp|Q30TH2|PNP_SULDN Polyribonucleotide nucleotidyltransferase
OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM
1251) GN=pnp PE=3 SV=1
Length = 721

Score = 31.6 bits (70), Expect = 3.5
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +3

Query: 468 YKKGDPGTVQGVIKEIINLGYIVTLPNGREGLLAASHL 581
YK GD +G++K+I+ G + LP+G +GLL S +
Sbjct: 651 YKVGD--IHKGIVKKIVEFGAFIELPDGVDGLLHISKI 686


>sp|Q9HZ71|RS1_PSEAE 30S ribosomal protein S1 OS=Pseudomonas
aeruginosa GN=rpsA PE=3 SV=1
Length = 559

Score = 30.4 bits (67), Expect = 7.7
Identities = 14/43 (32%), Positives = 28/43 (65%)
Frame = +3

Query: 453 DYTTIYKKGDPGTVQGVIKEIINLGYIVTLPNGREGLLAASHL 581
+Y ++++KG V+G +KE+ G +++L + EG+L AS +
Sbjct: 443 NYASLHEKGS--IVRGTVKEVDAKGAVISLGDDIEGILKASEI 483


>sp|Q9NTG1|PKDRE_HUMAN Polycystic kidney disease and receptor for
egg jelly-related protein OS=Homo sapiens GN=PKDREJ PE=2
SV=2
Length = 2253

Score = 30.4 bits (67), Expect = 7.7
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2

Query: 35 QNAGYLEVSKYGEHHFEDGAFSPCLFSACW 124
+N YL + + HF + FS L+ ACW
Sbjct: 515 RNGAYLSIKAFAFRHFLEAEFSISLYLACW 544


tr_hit_id A9USH2
Definition tr|A9USH2|A9USH2_MONBE Ubiquitin carboxyl-terminal hydrolase (Fragment) OS=Monosiga brevicollis
Align length 55
Score (bit) 38.5
E-value 0.32
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK953187|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0017_B19, 5'
(621 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9USH2|A9USH2_MONBE Ubiquitin carboxyl-terminal hydrolase (Fr... 39 0.32
tr|A6RSU4|A6RSU4_BOTFB Predicted protein OS=Botryotinia fuckelia... 36 1.6
tr|Q13VC4|Q13VC4_BURXL SSU ribosomal protein S1P OS=Burkholderia... 36 2.1
tr|B2T628|B2T628_BURPP Ribosomal protein S1 OS=Burkholderia phyt... 36 2.1
tr|B2JF06|B2JF06_BURP8 Ribosomal protein S1 OS=Burkholderia phym... 36 2.1
tr|B1G2W0|B1G2W0_9BURK Ribosomal protein S1 OS=Burkholderia gram... 36 2.1
tr|A6GU99|A6GU99_9BURK 30S ribosomal protein S1 OS=Limnobacter s... 35 2.7
tr|Q47GJ9|Q47GJ9_DECAR SSU ribosomal protein S1P OS=Dechloromona... 35 4.7
tr|B5WMW9|B5WMW9_9BURK Ribosomal protein S1 OS=Burkholderia sp. ... 35 4.7
tr|Q7WGU4|Q7WGU4_BORBR 30S ribosomal protein S1 OS=Bordetella br... 34 6.1
tr|Q7W604|Q7W604_BORPA 30S ribosomal protein S1 OS=Bordetella pa... 34 6.1
tr|Q7VZG0|Q7VZG0_BORPE 30S ribosomal protein S1 OS=Bordetella pe... 34 6.1
tr|Q63S06|Q63S06_BURPS 30S ribosomal protein S1 OS=Burkholderia ... 34 6.1
tr|Q62M27|Q62M27_BURMA Ribosomal protein S1 OS=Burkholderia mall... 34 6.1
tr|Q3SK81|Q3SK81_THIDA Ribosomal protein S1 OS=Thiobacillus deni... 34 6.1
tr|Q3JPY0|Q3JPY0_BURP1 Ribosomal protein S1 OS=Burkholderia pseu... 34 6.1
tr|Q39IF9|Q39IF9_BURS3 SSU ribosomal protein S1P OS=Burkholderia... 34 6.1
tr|Q2SY24|Q2SY24_BURTA Ribosomal protein S1 OS=Burkholderia thai... 34 6.1
tr|Q2L2S5|Q2L2S5_BORA1 30S ribosomal protein S1 OS=Bordetella av... 34 6.1
tr|Q1BY26|Q1BY26_BURCA SSU ribosomal protein S1P OS=Burkholderia... 34 6.1
tr|Q0BH91|Q0BH91_BURCM SSU ribosomal protein S1P OS=Burkholderia... 34 6.1
tr|B4EB40|B4EB40_BURCJ 30S ribosomal protein S1 OS=Burkholderia ... 34 6.1
tr|B1YV35|B1YV35_BURA4 Ribosomal protein S1 OS=Burkholderia ambi... 34 6.1
tr|B1JXS1|B1JXS1_BURCC Ribosomal protein S1 OS=Burkholderia ceno... 34 6.1
tr|A9IJJ0|A9IJJ0_BORPD 30S ribosomal protein S1 OS=Bordetella pe... 34 6.1
tr|A9ADV4|A9ADV4_BURM1 Ribosomal protein S1 (Small subunit ribos... 34 6.1
tr|A4JCH6|A4JCH6_BURVG SSU ribosomal protein S1P OS=Burkholderia... 34 6.1
tr|A3NXW9|A3NXW9_BURP0 30S ribosomal protein S1 OS=Burkholderia ... 34 6.1
tr|A3NC30|A3NC30_BURP6 30S ribosomal protein S1 OS=Burkholderia ... 34 6.1
tr|A3MHP0|A3MHP0_BURM7 30S ribosomal protein S1 OS=Burkholderia ... 34 6.1

>tr|A9USH2|A9USH2_MONBE Ubiquitin carboxyl-terminal hydrolase
(Fragment) OS=Monosiga brevicollis GN=5793 PE=3 SV=1
Length = 490

Score = 38.5 bits (88), Expect = 0.32
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = -2

Query: 341 SDSGTHWIGIHVIKKAPLLRLRFRW----CH*RLLWGSRSLIVLCRRCGGSCCIV 189
S++ T W G KAPL R W CH R +G + + CRRCGG C V
Sbjct: 171 SEASTGW-GNVFHGKAPLFSARLTWSRFKCHSRYAFGYTAFLPWCRRCGGLCDFV 224


>tr|A6RSU4|A6RSU4_BOTFB Predicted protein OS=Botryotinia fuckeliana
(strain B05.10) GN=BC1G_03517 PE=4 SV=1
Length = 290

Score = 36.2 bits (82), Expect = 1.6
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3

Query: 228 NQGTASPQQP-SVTPPEAQPQQRSFFDDMDSYPMSPTVRRRPY 353
NQ P QP PP+ PQQ + D +YP +P + PY
Sbjct: 11 NQNPYPPHQPYGAAPPQPYPQQPQYSQDNSAYPPAPNYSQNPY 53


>tr|Q13VC4|Q13VC4_BURXL SSU ribosomal protein S1P OS=Burkholderia
xenovorans (strain LB400) GN=Bxeno_A3427 PE=4 SV=1
Length = 577

Score = 35.8 bits (81), Expect = 2.1
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = +3

Query: 453 DYTTIYKKGDPGTVQGVIKEIINLGYIVTLPNGREGLLAASHLGCS 590
D++ +KKGD +QG IK I + G + LP G +GL+ S L S
Sbjct: 371 DFSRNFKKGDK--LQGAIKSITDFGVFIGLPGGIDGLVHLSDLSWS 414


>tr|B2T628|B2T628_BURPP Ribosomal protein S1 OS=Burkholderia
phytofirmans (strain DSM 17436 / PsJN) GN=Bphyt_3001
PE=4 SV=1
Length = 577

Score = 35.8 bits (81), Expect = 2.1
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = +3

Query: 453 DYTTIYKKGDPGTVQGVIKEIINLGYIVTLPNGREGLLAASHLGCS 590
D++ +KKGD +QG IK I + G + LP G +GL+ S L S
Sbjct: 371 DFSRNFKKGDK--LQGAIKSITDFGVFIGLPGGIDGLVHLSDLSWS 414


>tr|B2JF06|B2JF06_BURP8 Ribosomal protein S1 OS=Burkholderia
phymatum (strain DSM 17167 / STM815) GN=Bphy_0746 PE=4
SV=1
Length = 589

Score = 35.8 bits (81), Expect = 2.1
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = +3

Query: 453 DYTTIYKKGDPGTVQGVIKEIINLGYIVTLPNGREGLLAASHLGCS 590
D++ +KKGD +QG IK I + G + LP G +GL+ S L S
Sbjct: 384 DFSRNFKKGDK--LQGAIKSITDFGVFIGLPGGIDGLVHLSDLSWS 427


>tr|B1G2W0|B1G2W0_9BURK Ribosomal protein S1 OS=Burkholderia
graminis C4D1M GN=BgramDRAFT_3687 PE=4 SV=1
Length = 577

Score = 35.8 bits (81), Expect = 2.1
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = +3

Query: 453 DYTTIYKKGDPGTVQGVIKEIINLGYIVTLPNGREGLLAASHLGCS 590
D++ +KKGD +QG IK I + G + LP G +GL+ S L S
Sbjct: 371 DFSRNFKKGDK--LQGAIKSITDFGVFIGLPGGIDGLVHLSDLSWS 414


>tr|A6GU99|A6GU99_9BURK 30S ribosomal protein S1 OS=Limnobacter sp.
MED105 GN=rpsA PE=4 SV=1
Length = 567

Score = 35.4 bits (80), Expect = 2.7
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3

Query: 453 DYTTIYKKGDPGTVQGVIKEIINLGYIVTLPNGREGLLAASHL 581
+++T +KKGD V G IK I + G + LP G +GL+ S L
Sbjct: 364 EFSTSFKKGDK--VSGAIKSITDFGVFIGLPGGIDGLVHLSDL 404


>tr|Q47GJ9|Q47GJ9_DECAR SSU ribosomal protein S1P OS=Dechloromonas
aromatica (strain RCB) GN=Daro_1280 PE=4 SV=1
Length = 559

Score = 34.7 bits (78), Expect = 4.7
Identities = 19/46 (41%), Positives = 26/46 (56%)
Frame = +3

Query: 453 DYTTIYKKGDPGTVQGVIKEIINLGYIVTLPNGREGLLAASHLGCS 590
D+ +KKGD V+G IK I + G + LP G +GL+ S L S
Sbjct: 355 DFAMNHKKGDK--VKGAIKSITDFGIFIGLPGGIDGLVHLSDLSWS 398


>tr|B5WMW9|B5WMW9_9BURK Ribosomal protein S1 OS=Burkholderia sp.
H160 GN=BH160DRAFT_4422 PE=4 SV=1
Length = 577

Score = 34.7 bits (78), Expect = 4.7
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = +3

Query: 453 DYTTIYKKGDPGTVQGVIKEIINLGYIVTLPNGREGLLAASHLGCS 590
D++ +KKGD + G IK I + G + LP G +GL+ S L S
Sbjct: 371 DFSRNFKKGDK--ISGAIKSITDFGVFIGLPGGIDGLVHLSDLSWS 414


>tr|Q7WGU4|Q7WGU4_BORBR 30S ribosomal protein S1 OS=Bordetella
bronchiseptica GN=rpsA PE=4 SV=1
Length = 576

Score = 34.3 bits (77), Expect = 6.1
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3

Query: 453 DYTTIYKKGDPGTVQGVIKEIINLGYIVTLPNGREGLLAASHL 581
++ T +K+GD V+G IK I + G V LP G +GL+ S L
Sbjct: 371 EFATNFKRGDK--VRGAIKSITDFGVFVGLPGGIDGLVHLSDL 411