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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK953082
Clone id TST38A01NGRL0015_N07
Library
Length 576
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0015_N07. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
GTGGCAACAATAGTGGTAATGGTGGTGGCAAACCCCTTTCGCGCTTGAATCAGTACCTCT
ACAGTGGTGACAAGAAACACGTGCTTGCAGGCATCCTCATTGTCGCGGCCATCGGTGCTA
TCCCCTGGCTCCTCCTCGCTCGAGATGTGAAGCACCAATCGCATGAGGATTATATGGATA
AGGCAGAGAAGGCCAAACAAGTCGAGAAAGCACGCCAATCAAGATTGTCTTCCTCCTAAT
GGTATCGAGTGGTTTGATTTCGAAGTGTTGATTGGACATTACCAATGATTGATCCTTTGT
AGTGACCAGAATTGAGATTGGCAAAGTTTGAGATAGTGTGCAAAAAATGCAAACGATACA
GGAAGAACCGATACTGGCCGGGTCTTTTTTCCATTGATTTCTGTTTAAAAGGTGTATGTT
CTTACATACCTAAAGTTTAAGAATAGAACAAGAACATAATTGATTAAAGTTAGACCTTAA
GTGGCAGAACATTTGAACTGGTAGCAGGACTGCTTGATGTTGTTTACTGCAGTCTAGTCT
ATGGTAAATGTTGCACTTTTGGCAGGCCTCTTTGAA
■■Homology search results ■■ -
sp_hit_id Q3U3C9
Definition sp|Q3U3C9|GSE1_MOUSE Genetic suppressor element 1 OS=Mus musculus
Align length 78
Score (bit) 31.2
E-value 3.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953082|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_N07, 5'
         (576 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3U3C9|GSE1_MOUSE Genetic suppressor element 1 OS=Mus musculu...    31   3.9  
sp|Q70JA7|CHSS3_HUMAN Chondroitin sulfate synthase 3 OS=Homo sap...    30   6.6  
sp|Q5KYA3|PROB_GEOKA Glutamate 5-kinase OS=Geobacillus kaustophi...    30   8.6  
sp|Q6BY20|PALF_DEBHA pH-response regulator protein palF/RIM8 OS=...    30   8.6  

>sp|Q3U3C9|GSE1_MOUSE Genetic suppressor element 1 OS=Mus musculus
            GN=Gse1 PE=2 SV=2
          Length = 1213

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
 Frame = +3

Query: 21   GGGKPLSRLNQYLYSGDKKHXXXXXXXXXXXXXXPWL-LLARDVKHQSHEDYMDKAEKAK 197
            GG K LS L+ YL     K               PW   +A +  HQ HE  +   +KA 
Sbjct: 979  GGKKSLSMLH-YLRGAAPKDIPVPLSHSINGKSKPWEPFVAEEFAHQFHESVLQSTQKAL 1037

Query: 198  QVEKARQSRLSSS*WYRV 251
            Q  K   + LS+   ++V
Sbjct: 1038 QKHKGNSALLSAEQSHKV 1055


>sp|Q70JA7|CHSS3_HUMAN Chondroitin sulfate synthase 3 OS=Homo
           sapiens GN=CHSY3 PE=1 SV=3
          Length = 882

 Score = 30.4 bits (67), Expect = 6.6
 Identities = 25/96 (26%), Positives = 45/96 (46%)
 Frame = -2

Query: 356 SFAFFAHYLKLCQSQFWSLQRINHW*CPINTSKSNHSIPLGGRQS*LACFLDLFGLLCLI 177
           SF+F ++ LK+  S   + +   H     N  K +  +PL GR      F++ F  +CLI
Sbjct: 593 SFSFISNSLKILSSFQGAKEMGGH-----NEKKVHILVPLIGRYDIFLRFMENFENMCLI 647

Query: 176 HIILMRLVLHISSEEEPGDSTDGRDNEDACKHVFLV 69
               ++LV+ + S +           +D+ KH+ L+
Sbjct: 648 PKQNVKLVIILFSRD---------SGQDSSKHIELI 674


>sp|Q5KYA3|PROB_GEOKA Glutamate 5-kinase OS=Geobacillus kaustophilus
           GN=proB PE=3 SV=1
          Length = 374

 Score = 30.0 bits (66), Expect = 8.6
 Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 4/118 (3%)
 Frame = -2

Query: 353 FAFFAHYLKLCQSQFWSLQRINHW*CPINTSKSNHSIPLGGRQS*LACFLDLFG----LL 186
           F F A  L L +S F+S +R  +    I T   N ++P+      ++     FG    L 
Sbjct: 93  FGFTAAQLLLTRSDFYSRERFRNLFATITTLLENGAVPIINENDSVSIEELTFGDNDMLS 152

Query: 185 CLIHIILMRLVLHISSEEEPGDSTDGRDNEDACKHVFLVTTVEVLIQARKGFATTITT 12
            L+   L    L + ++       + + N  A K+ FL    + +I+A  G  + + T
Sbjct: 153 ALVAGFLHADALILLTDINGLYDANPKTNPQAKKYAFLPEITDEMIEAAGGIGSAVGT 210


>sp|Q6BY20|PALF_DEBHA pH-response regulator protein palF/RIM8
           OS=Debaryomyces hansenii GN=RIM8 PE=3 SV=2
          Length = 782

 Score = 30.0 bits (66), Expect = 8.6
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
 Frame = -2

Query: 428 YVRTYTF*TEINGKKTRPVSVLP-------VSFAFFAHYLKLCQSQFWSLQRINHW*CPI 270
           YV   TF +EIN     P    P       VSF +F   L     +   L   NH    I
Sbjct: 376 YVDPNTFQSEINTNLRVPADAFPTISGCPLVSFQYFIEVLINLSGKSLILDSSNHHKPSI 435

Query: 269 NTSKSNHSI 243
           +T ++NHS+
Sbjct: 436 STDEANHSL 444
tr_hit_id A7QFY8
Definition tr|A7QFY8|A7QFY8_VITVI Chromosome chr9 scaffold_90, whole genome shotgun sequence OS=Vitis vinifera
Align length 77
Score (bit) 68.2
E-value 3.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK953082|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_N07, 5'
         (576 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7QFY8|A7QFY8_VITVI Chromosome chr9 scaffold_90, whole genome...    68   3e-10
tr|Q2QNS1|Q2QNS1_ORYSJ Putative uncharacterized protein OS=Oryza...    64   5e-09
tr|Q0IMP3|Q0IMP3_ORYSJ Os12g0556400 protein (Fragment) OS=Oryza ...    64   5e-09
tr|P93048|P93048_ARATH GAG1At protein (Putative uncharacterized ...    64   5e-09
tr|Q0J6S6|Q0J6S6_ORYSJ Os08g0272000 protein (Fragment) OS=Oryza ...    64   6e-09
tr|B6TPZ1|B6TPZ1_MAIZE Putative uncharacterized protein OS=Zea m...    64   6e-09
tr|B8LLR3|B8LLR3_PICSI Putative uncharacterized protein OS=Picea...    63   1e-08
tr|A2ZLK0|A2ZLK0_ORYSI Putative uncharacterized protein OS=Oryza...    61   4e-08
tr|Q9SAH1|Q9SAH1_ARATH F23A5.25 protein (Putative uncharacterize...    61   5e-08
tr|A9SUI8|A9SUI8_PHYPA Predicted protein OS=Physcomitrella paten...    55   3e-06
tr|B8B921|B8B921_ORYSI Putative uncharacterized protein OS=Oryza...    54   6e-06
tr|A5AIT0|A5AIT0_VITVI Putative uncharacterized protein OS=Vitis...    40   0.070
tr|A2YTA7|A2YTA7_ORYSI Putative uncharacterized protein OS=Oryza...    37   1.0  
tr|A3BRE5|A3BRE5_ORYSJ Putative uncharacterized protein OS=Oryza...    35   2.3  
tr|A4BAL2|A4BAL2_9GAMM ABC transporter, fused inner membrane sub...    35   2.9  
tr|Q5CJ31|Q5CJ31_CRYHO Kinesin heavy chain OS=Cryptosporidium ho...    35   2.9  
tr|Q483D7|Q483D7_COLP3 Putative membrane protein OS=Colwellia ps...    34   5.0  
tr|A5FK47|A5FK47_FLAJ1 HI0933 family protein OS=Flavobacterium j...    34   6.7  

>tr|A7QFY8|A7QFY8_VITVI Chromosome chr9 scaffold_90, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00037619001
           PE=4 SV=1
          Length = 83

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 37/77 (48%), Positives = 45/77 (58%)
 Frame = +3

Query: 6   NNSGNGGGKPLSRLNQYLYSGDKKHXXXXXXXXXXXXXXPWLLLARDVKHQSHEDYMDKA 185
           +N GNGG +  SR+  YLYSGDKKH              PW L+ R  K  SH+DYMD+A
Sbjct: 7   SNGGNGGFR--SRMEYYLYSGDKKHVLAGIAIFSIAFGIPWYLMTRGTKQDSHQDYMDRA 64

Query: 186 EKAKQVEKARQSRLSSS 236
           EKA+   +AR S  SSS
Sbjct: 65  EKAR---RARLSTSSSS 78


>tr|Q2QNS1|Q2QNS1_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=LOC_Os12g36930 PE=4 SV=1
          Length = 82

 Score = 64.3 bits (155), Expect = 5e-09
 Identities = 33/77 (42%), Positives = 41/77 (53%)
 Frame = +3

Query: 3   GNNSGNGGGKPLSRLNQYLYSGDKKHXXXXXXXXXXXXXXPWLLLARDVKHQSHEDYMDK 182
           G  +  GGG   +R+  YLYSG+KKH              PW L+ R  KHQSH+DYM++
Sbjct: 4   GEATSGGGGGFRARVEHYLYSGEKKHVVAGIAIFAAIFGVPWYLMTRGAKHQSHQDYMER 63

Query: 183 AEKAKQVEKARQSRLSS 233
           A       KAR  RLSS
Sbjct: 64  A------NKARSERLSS 74


>tr|Q0IMP3|Q0IMP3_ORYSJ Os12g0556400 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os12g0556400 PE=4 SV=1
          Length = 111

 Score = 64.3 bits (155), Expect = 5e-09
 Identities = 33/77 (42%), Positives = 41/77 (53%)
 Frame = +3

Query: 3   GNNSGNGGGKPLSRLNQYLYSGDKKHXXXXXXXXXXXXXXPWLLLARDVKHQSHEDYMDK 182
           G  +  GGG   +R+  YLYSG+KKH              PW L+ R  KHQSH+DYM++
Sbjct: 33  GEATSGGGGGFRARVEHYLYSGEKKHVVAGIAIFAAIFGVPWYLMTRGAKHQSHQDYMER 92

Query: 183 AEKAKQVEKARQSRLSS 233
           A       KAR  RLSS
Sbjct: 93  A------NKARSERLSS 103


>tr|P93048|P93048_ARATH GAG1At protein (Putative uncharacterized
           protein At1g16000) (Putative uncharacterized protein)
           (Putative uncharacterized protein At1g16000/T24D18_10)
           (T24D18.10 protein) OS=Arabidopsis thaliana GN=GAG1At
           PE=2 SV=1
          Length = 86

 Score = 64.3 bits (155), Expect = 5e-09
 Identities = 34/78 (43%), Positives = 45/78 (57%)
 Frame = +3

Query: 3   GNNSGNGGGKPLSRLNQYLYSGDKKHXXXXXXXXXXXXXXPWLLLARDVKHQSHEDYMDK 182
           G  S  GGG   +++  Y+YSG+KKH              PW L+ +  KHQSH+DYMDK
Sbjct: 10  GPASMAGGGGFRAKMEHYVYSGEKKHVLVGIGIVTIIFGVPWYLMTQGSKHQSHQDYMDK 69

Query: 183 AEKAKQVEKARQSRLSSS 236
           A      +KAR++RLSSS
Sbjct: 70  A------DKARKARLSSS 81


>tr|Q0J6S6|Q0J6S6_ORYSJ Os08g0272000 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os08g0272000 PE=4 SV=1
          Length = 80

 Score = 63.9 bits (154), Expect = 6e-09
 Identities = 34/77 (44%), Positives = 40/77 (51%)
 Frame = +3

Query: 3   GNNSGNGGGKPLSRLNQYLYSGDKKHXXXXXXXXXXXXXXPWLLLARDVKHQSHEDYMDK 182
           G  +G  GG    RL  YLYSG+KKH              PW  ++R  KHQSH+DYM+K
Sbjct: 2   GETTGVSGGGFRRRLEYYLYSGEKKHVVAGIAIFAAIFGVPWYFMSRGTKHQSHQDYMEK 61

Query: 183 AEKAKQVEKARQSRLSS 233
           A       KAR  RLSS
Sbjct: 62  A------NKARSERLSS 72


>tr|B6TPZ1|B6TPZ1_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 81

 Score = 63.9 bits (154), Expect = 6e-09
 Identities = 33/77 (42%), Positives = 40/77 (51%)
 Frame = +3

Query: 3   GNNSGNGGGKPLSRLNQYLYSGDKKHXXXXXXXXXXXXXXPWLLLARDVKHQSHEDYMDK 182
           G  +  GGG   +R+  YLYSG+KKH              PW  + R  KHQSH+DYM+K
Sbjct: 3   GEATNAGGGGIRARMEHYLYSGEKKHVVAGIAIFAAVFGVPWYFMTRGAKHQSHQDYMEK 62

Query: 183 AEKAKQVEKARQSRLSS 233
           A       KAR  RLSS
Sbjct: 63  A------NKARSERLSS 73


>tr|B8LLR3|B8LLR3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 80

 Score = 62.8 bits (151), Expect = 1e-08
 Identities = 36/79 (45%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
 Frame = +3

Query: 3   GNNSGNGGGKP-LSRLNQYLYSGDKKHXXXXXXXXXXXXXXPWLLLARDVKHQSHEDYMD 179
           G N G  G K   SRL  Y+YSG+KKH              PW  + R  +HQSH+DYMD
Sbjct: 3   GENGGAEGYKGHSSRLQYYMYSGEKKHVFVGIAVFAAVFSIPWFYMNRGKQHQSHQDYMD 62

Query: 180 KAEKAKQVEKARQSRLSSS 236
           KA      EKAR+ RLS+S
Sbjct: 63  KA------EKARRERLSTS 75


>tr|A2ZLK0|A2ZLK0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_38698 PE=4 SV=1
          Length = 82

 Score = 61.2 bits (147), Expect = 4e-08
 Identities = 32/77 (41%), Positives = 40/77 (51%)
 Frame = +3

Query: 3   GNNSGNGGGKPLSRLNQYLYSGDKKHXXXXXXXXXXXXXXPWLLLARDVKHQSHEDYMDK 182
           G  +  G G   +R+  YLYSG+KKH              PW L+ R  KHQSH+DYM++
Sbjct: 4   GEATSGGRGGFRARVEHYLYSGEKKHVVAGIAIFAAIFGVPWYLMTRGAKHQSHQDYMER 63

Query: 183 AEKAKQVEKARQSRLSS 233
           A       KAR  RLSS
Sbjct: 64  A------NKARSERLSS 74


>tr|Q9SAH1|Q9SAH1_ARATH F23A5.25 protein (Putative uncharacterized
           protein At1g80890) (At1g80890) OS=Arabidopsis thaliana
           GN=At1g80890 PE=4 SV=1
          Length = 80

 Score = 60.8 bits (146), Expect = 5e-08
 Identities = 31/77 (40%), Positives = 45/77 (58%)
 Frame = +3

Query: 6   NNSGNGGGKPLSRLNQYLYSGDKKHXXXXXXXXXXXXXXPWLLLARDVKHQSHEDYMDKA 185
           + S  GGG   +++  Y+YSG+KKH              PW L+ +  KH+SH+DY++KA
Sbjct: 5   SKSNLGGGGIRAKMEHYVYSGEKKHVLAGIGIISIIFGIPWYLMNQGSKHRSHQDYLEKA 64

Query: 186 EKAKQVEKARQSRLSSS 236
           +KA+   KAR S  SSS
Sbjct: 65  DKAR---KARLSSSSSS 78


>tr|A9SUI8|A9SUI8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_166631 PE=4 SV=1
          Length = 111

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 30/72 (41%), Positives = 38/72 (52%)
 Frame = +3

Query: 21  GGGKPLSRLNQYLYSGDKKHXXXXXXXXXXXXXXPWLLLARDVKHQSHEDYMDKAEKAKQ 200
           G   P SR+ + L+SG K+H              PWLLL    KH SH DYMD+A     
Sbjct: 36  GWKTPPSRMQEILWSGSKRHVFLGMLGISAIAAIPWLLLTSGTKHDSHADYMDRA----- 90

Query: 201 VEKARQSRLSSS 236
            E AR+SRLS++
Sbjct: 91  -EGARRSRLSNA 101