DK952968
Clone id TST38A01NGRL0015_I11
Library
Length 565
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0015_I11. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence
GGCCAACATGACTAAGGTGCATGTGGGTGAGAGCAACAGCGCAACAGCAGCAAAGGGAAC
TTGGAGCTCAAAAAAGTGTAAAATGGGGGAGCGGCCATTGGCTGTGGCCTATGCAATAAG
CAGCAGGCACACATGCTGAAGATAAGAAACACCTGGAGTCAAAAAGGAGATTTGCAACAA
CAAGCAACTACAAGTGGACTTGCACTCTTAGCACCCATCAAGGTTTGTCTCTGCTACCTC
GTTTTTTGCTTCGTCTAAGGTTTCTATGGTTGTCTTGCATTTCTTATGAAGATGACTTCT
TTGAGTTAGCATAGTCTAGGATACTGCTTGCCTGATTTAAAATTTCCTTTTTTTGTCTGT
GTGATTCAATAACATGAATGCGCTGGATCATCCCACCAAAAAAAGGCTTTTCTTCAAAAT
AGCGCTCTCTTGTATTTCCAAAAGAAGATAGAACATGAGAAATGTTGATTTCCAAATGTT
TTGTGGCTCCTTCCTGTGAGAATCTTGCTACTCTTTTCCCATACAGGCTCAGGAAAATCA
CATTTCTGAGGTAAGTACTGTCTCA
■■Homology search results ■■ -
sp_hit_id Q7JKY3
Definition sp|Q7JKY3|DPF1_CAEEL Dipeptidyl peptidase family member 1 OS=Caenorhabditis elegans
Align length 68
Score (bit) 31.6
E-value 2.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK952968|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_I11, 5'
(565 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q7JKY3|DPF1_CAEEL Dipeptidyl peptidase family member 1 OS=Cae... 32 2.8
sp|P34535|YNC2_CAEEL LMBR1 domain-containing protein R05D3.2 OS=... 30 8.3

>sp|Q7JKY3|DPF1_CAEEL Dipeptidyl peptidase family member 1
OS=Caenorhabditis elegans GN=dpf-1 PE=1 SV=1
Length = 799

Score = 31.6 bits (70), Expect = 2.8
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = -3

Query: 524 VWEKSSKILTGRSHKTFGNQHFSCSIFFWKYKRALF*RKAFFWW----DDPAHSCY*ITQ 357
++ +SS G + + G +H +F W Y+ +F RK WW D A++ Y
Sbjct: 205 IYYQSSPEEEGLTRVSNGGEHTVDGLFDWIYEEEIFGRKDAMWWSTKGDQLAYASYDNHL 264

Query: 356 TKKGNFKS 333
TK + K+
Sbjct: 265 TKNVSLKT 272


>sp|P34535|YNC2_CAEEL LMBR1 domain-containing protein R05D3.2
OS=Caenorhabditis elegans GN=R05D3.2 PE=2 SV=1
Length = 737

Score = 30.0 bits (66), Expect = 8.3
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -2

Query: 75 FFELQVPFAAVALLLSPTCTLVMLA 1
F L+ P AA ALL+ TC+L+M+A
Sbjct: 539 FMSLRFPVAAAALLVLTTCSLIMVA 563


tr_hit_id A7NHZ6
Definition tr|A7NHZ6|A7NHZ6_ROSCS Hydroxymethylglutaryl-CoA reductase, degradative OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8)
Align length 39
Score (bit) 35.0
E-value 2.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK952968|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_I11, 5'
(565 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7NHZ6|A7NHZ6_ROSCS Hydroxymethylglutaryl-CoA reductase, degr... 35 2.9

>tr|A7NHZ6|A7NHZ6_ROSCS Hydroxymethylglutaryl-CoA reductase,
degradative OS=Roseiflexus castenholzii (strain DSM
13941 / HLO8) GN=Rcas_0981 PE=3 SV=1
Length = 444

Score = 35.0 bits (79), Expect = 2.9
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = -1

Query: 406 PFFGGMIQRIHVIESHRQKKEILNQASSILDYANSKKSS 290
P G +Q +HV + HR + +IL Q +IL AN + SS
Sbjct: 112 PLMIGQVQLVHVADPHRARHDILAQREAILALANRQSSS 150