| DK952926 |
| Clone id |
TST38A01NGRL0015_G16 |
| Library |
TST38 |
| Length |
565 |
| Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0015_G16. 5' end sequence. |
| Accession |
DK952926 |
| Tissue type |
prothallia |
| Developmental stage |
gametophyte |
| Contig ID |
- |
| Sequence |
CGCTCTCTCCTCAATGGCACGATAGAAGCGCTGAGCTTGACCAACAAAGGCTCGTTACGT
TTTCTCCAAAGTTACGGGACAATTTTGATCAAGGGCTTAATAAGAATCACTTGCTATCAC
CCTGGATTCATAATCGGAACAAACACTGGGTTCAAGAAGACCGGAGACCCACTTGGAGCC
CCAAATATCGAGCTAGCTCAGCTGAGCATGAGAATGCAGAGCTCAGTTTGGCGAACAAGG
AGCAGATTGCGTGGACTGCAAAGAAGATTTTCCAGGAAGAAGCGCAGGAAGAAGAAGAAG
AAGATATTTCATGCTCTAGTGTTGATGGTGCACAATATAATCTGAATGGAGATGAAATTC
TTGTGGCAGCACTCAGTTCTTATTCTAAGCATAATGATTTGGAAAATGGACGCAGAGTCC
ATGCTCAGATCGTTCGGAAAGGTTTGCTCAAGACAAATGTGTTTGTTGGGAACAGCTTAA
TTAATTTGTATGCCAAATCTGGAAGTCTCGTAAAAGCTCGGGAAGTATTTGAAAGAGGTC
AGCAATCGGAATGTCATTTCATGGA |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q9SS83 |
| Definition |
sp|Q9SS83|PP220_ARATH Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidopsis thaliana |
| Align length |
67 |
| Score (bit) |
57.8 |
| E-value |
4.0e-08 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DK952926|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_G16, 5'
(565 letters)
Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9SS83|PP220_ARATH Pentatricopeptide repeat-containing protei... 58 4e-08
sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containi... 51 4e-06
sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protei... 50 1e-05
sp|Q0WNP3|PP319_ARATH Pentatricopeptide repeat-containing protei... 49 2e-05
sp|P0C8Q8|PP394_ARATH Pentatricopeptide repeat-containing protei... 48 4e-05
sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containi... 47 5e-05
sp|Q9CA56|PP121_ARATH Pentatricopeptide repeat-containing protei... 47 5e-05
sp|Q1PFQ9|PPR62_ARATH Pentatricopeptide repeat-containing protei... 47 8e-05
sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protei... 47 8e-05
sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protei... 46 1e-04
sp|Q4V389|PPR55_ARATH Pentatricopeptide repeat-containing protei... 45 2e-04
sp|Q9LVF9|PP245_ARATH Pentatricopeptide repeat-containing protei... 45 2e-04
sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protei... 43 2e-04
sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protei... 45 2e-04
sp|O65543|PP343_ARATH Pentatricopeptide repeat-containing protei... 45 2e-04
sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containi... 45 2e-04
sp|O64766|PP185_ARATH Pentatricopeptide repeat-containing protei... 45 2e-04
sp|P93005|PP181_ARATH Pentatricopeptide repeat-containing protei... 45 2e-04
sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protei... 45 2e-04
sp|Q9LJI9|PP260_ARATH Pentatricopeptide repeat-containing protei... 44 4e-04
sp|Q9LJJ1|PP259_ARATH Putative pentatricopeptide repeat-containi... 44 4e-04
sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containi... 44 4e-04
sp|Q9LTF4|PP429_ARATH Putative pentatricopeptide repeat-containi... 44 5e-04
sp|Q9FNN9|PP370_ARATH Putative pentatricopeptide repeat-containi... 44 5e-04
sp|O49399|PP321_ARATH Pentatricopeptide repeat-containing protei... 44 5e-04
sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containi... 44 5e-04
sp|Q9LUC2|PP231_ARATH Pentatricopeptide repeat-containing protei... 44 5e-04
sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protei... 44 5e-04
sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protei... 44 7e-04
sp|Q9LN69|PPR50_ARATH Putative pentatricopeptide repeat-containi... 44 7e-04
>sp|Q9SS83|PP220_ARATH Pentatricopeptide repeat-containing protein
At3g09040, mitochondrial OS=Arabidopsis thaliana
GN=PCMP-E88 PE=2 SV=1
Length = 1028
Score = 57.8 bits (138), Expect = 4e-08
Identities = 30/67 (44%), Positives = 48/67 (71%)
Frame = +3
Query: 336 YNLNGDEILVAALSSYSKHNDLENGRRVHAQIVRKGLLKTNVFVGNSLINLYAKSGSLVK 515
YN++ D + LS+ + +DLE G + H+ I++K L K N+FVGN+L+++YAK G+L
Sbjct: 424 YNID-DFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAK-NLFVGNALVDMYAKCGALED 481
Query: 516 AREVFER 536
AR++FER
Sbjct: 482 ARQIFER 488
Score = 42.7 bits (99), Expect = 0.001
Identities = 19/54 (35%), Positives = 36/54 (66%)
Frame = +3
Query: 372 LSSYSKHNDLENGRRVHAQIVRKGLLKTNVFVGNSLINLYAKSGSLVKAREVFE 533
LS+ ++ ++E GR++H +++ GL + N + G +L+++YAK + AR VFE
Sbjct: 167 LSTCARETNVEFGRQIHCSMIKMGL-ERNSYCGGALVDMYAKCDRISDARRVFE 219
Score = 39.3 bits (90), Expect = 0.014
Identities = 21/58 (36%), Positives = 38/58 (65%)
Frame = +3
Query: 360 LVAALSSYSKHNDLENGRRVHAQIVRKGLLKTNVFVGNSLINLYAKSGSLVKAREVFE 533
L + LS+ +L+ G VHA+ ++ GL +N++VG+SL+++Y+K + A +VFE
Sbjct: 330 LGSVLSAIGIVANLDLGLVVHAEAIKLGLA-SNIYVGSSLVSMYSKCEKMEAAAKVFE 386
Score = 35.8 bits (81), Expect = 0.15
Identities = 20/57 (35%), Positives = 36/57 (63%)
Frame = +3
Query: 360 LVAALSSYSKHNDLENGRRVHAQIVRKGLLKTNVFVGNSLINLYAKSGSLVKAREVF 530
L + L + + + L G++VH V+ GL + ++ G+SLI++Y+K G + AR+VF
Sbjct: 532 LASTLKACTHVHGLYQGKQVHCLSVKCGLDR-DLHTGSSLIDMYSKCGIIKDARKVF 587
Score = 33.9 bits (76), Expect = 0.57
Identities = 20/59 (33%), Positives = 34/59 (57%)
Frame = +3
Query: 372 LSSYSKHNDLENGRRVHAQIVRKGLLKTNVFVGNSLINLYAKSGSLVKAREVFERGQQS 548
+ Y+K D++ +V ++ R+ +NV NSLIN YAK+G A ++F+ +QS
Sbjct: 774 IDMYAKCGDMKGSSQVFDEMRRR----SNVVSWNSLINGYAKNGYAEDALKIFDSMRQS 828
>sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing
protein At5g09950 OS=Arabidopsis thaliana GN=PCMP-H35
PE=3 SV=1
Length = 995
Score = 50.8 bits (120), Expect = 4e-06
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Frame = +3
Query: 357 ILVAALSSYSKHND--LENGRRVHAQIVRKGLLKTNVFVGNSLINLYAKSGSLVKAREVF 530
IL+++ YS + L+ GR VH ++ GL+ V +GN L+N+YAK GS+ AR VF
Sbjct: 313 ILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVF 372
Score = 39.3 bits (90), Expect = 0.014
Identities = 21/63 (33%), Positives = 40/63 (63%)
Frame = +3
Query: 342 LNGDEILVAALSSYSKHNDLENGRRVHAQIVRKGLLKTNVFVGNSLINLYAKSGSLVKAR 521
L G L+++LSS + + G+++H + ++ G + NV V N+L+ LYA++G L + R
Sbjct: 412 LPGSFTLISSLSSCASLKWAKLGQQIHGESLKLG-IDLNVSVSNALMTLYAETGYLNECR 470
Query: 522 EVF 530
++F
Sbjct: 471 KIF 473
Score = 37.4 bits (85), Expect = 0.051
Identities = 17/35 (48%), Positives = 27/35 (77%)
Frame = +3
Query: 432 VRKGLLKTNVFVGNSLINLYAKSGSLVKAREVFER 536
++K L T++FVG+ L++ +AKSGSL AR+VF +
Sbjct: 234 IQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQ 268
Score = 32.0 bits (71), Expect = 2.2
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 438 KGLLKTNVFVGNSLINLYAKSGSLVKAREVFERGQQSEC 554
K L +V++ N+LIN Y ++G V AR+VF+ C
Sbjct: 29 KNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNC 67
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein
At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=2 SV=1
Length = 786
Score = 49.7 bits (117), Expect = 1e-05
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Frame = +3
Query: 228 LANKEQIAWTA-----KKIFXXXXXXXXXXDISCSSVDGAQYNLNGDEILVAALSSYSKH 392
L ++ ++WT K I D+ ++ Q+ L L+S +
Sbjct: 106 LPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTN------VLASVAAT 159
Query: 393 NDLENGRRVHAQIVRKGLLKTNVFVGNSLINLYAKSGSLVKAREVFER 536
+E G++VH+ IV+ GL + NV V NSL+N+YAK G + A+ VF+R
Sbjct: 160 RCMETGKKVHSFIVKLGL-RGNVSVSNSLLNMYAKCGDPMMAKFVFDR 206
Score = 46.2 bits (108), Expect = 1e-04
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
Frame = +3
Query: 210 ENAELSLANKEQIAWTAKKI-FXXXXXXXXXXDISCSSVDGAQYNLNGDEILVAALSSYS 386
+N +SL +++ +AWTA + + ++ S V G Q L A LS S
Sbjct: 367 KNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRP--NSYTLAAMLSVAS 424
Query: 387 KHNDLENGRRVHAQIVRKGLLKTNVFVGNSLINLYAKSGSLVKAREVFE 533
L +G+++H V+ G + + V V N+LI +YAK+G++ A F+
Sbjct: 425 SLASLSHGKQIHGSAVKSGEIYS-VSVSNALITMYAKAGNITSASRAFD 472
Score = 38.1 bits (87), Expect = 0.030
Identities = 17/52 (32%), Positives = 36/52 (69%)
Frame = +3
Query: 378 SYSKHNDLENGRRVHAQIVRKGLLKTNVFVGNSLINLYAKSGSLVKAREVFE 533
S +K N + VH ++++ GL+ +V++ N+L+N+Y+K+G + AR++F+
Sbjct: 23 SVNKSNGRFTAQLVHCRVIKSGLM-FSVYLMNNLMNVYSKTGYALHARKLFD 73
>sp|Q0WNP3|PP319_ARATH Pentatricopeptide repeat-containing protein
At4g18520 OS=Arabidopsis thaliana GN=PCMP-A2 PE=2 SV=1
Length = 617
Score = 48.5 bits (114), Expect = 2e-05
Identities = 23/54 (42%), Positives = 39/54 (72%)
Frame = +3
Query: 372 LSSYSKHNDLENGRRVHAQIVRKGLLKTNVFVGNSLINLYAKSGSLVKAREVFE 533
L + S+ L GR+VH+ +V++ ++KT+VFVG SL+++YAK G + R+VF+
Sbjct: 291 LKACSEEKALRFGRQVHSLVVKR-MIKTDVFVGTSLMDMYAKCGEISDCRKVFD 343
Score = 40.4 bits (93), Expect = 0.006
Identities = 22/56 (39%), Positives = 36/56 (64%)
Frame = +3
Query: 366 AALSSYSKHNDLENGRRVHAQIVRKGLLKTNVFVGNSLINLYAKSGSLVKAREVFE 533
+AL + + L GR +H+ I +K +NVFVG++LI++YAK G + +A VF+
Sbjct: 491 SALKACANSESLLIGRSIHS-IAKKNHALSNVFVGSALIHMYAKCGFVSEAFRVFD 545
Score = 38.5 bits (88), Expect = 0.023
Identities = 20/67 (29%), Positives = 37/67 (55%)
Frame = +3
Query: 351 DEILVAALSSYSKHNDLENGRRVHAQIVRKGLLKTNVFVGNSLINLYAKSGSLVKAREVF 530
+ + V L+ S+ + E GR+VH +V+ G+ N+ V +SL+ YA+ G L A F
Sbjct: 184 ERMFVCLLNLCSRRAEFELGRQVHGNMVKVGV--GNLIVESSLVYFYAQCGELTSALRAF 241
Query: 531 ERGQQSE 551
+ ++ +
Sbjct: 242 DMMEEKD 248
Score = 36.2 bits (82), Expect = 0.11
Identities = 27/106 (25%), Positives = 53/106 (50%)
Frame = +3
Query: 228 LANKEQIAWTAKKIFXXXXXXXXXXDISCSSVDGAQYNLNGDEILVAALSSYSKHNDLEN 407
++N+ + WT+ I IS + ++ + + +V+ L + L
Sbjct: 345 MSNRNTVTWTSI-IAAHAREGFGEEAISLFRIMKRRHLIANNLTVVSILRACGSVGALLL 403
Query: 408 GRRVHAQIVRKGLLKTNVFVGNSLINLYAKSGSLVKAREVFERGQQ 545
G+ +HAQI++ + K NV++G++L+ LY K G ++R+ F QQ
Sbjct: 404 GKELHAQIIKNSIEK-NVYIGSTLVWLYCKCG---ESRDAFNVLQQ 445
>sp|P0C8Q8|PP394_ARATH Pentatricopeptide repeat-containing protein
At5g19020, mitochondrial OS=Arabidopsis thaliana
GN=PCMP-E42 PE=2 SV=1
Length = 685
Score = 47.8 bits (112), Expect = 4e-05
Identities = 23/60 (38%), Positives = 39/60 (65%)
Frame = +3
Query: 351 DEILVAALSSYSKHNDLENGRRVHAQIVRKGLLKTNVFVGNSLINLYAKSGSLVKAREVF 530
+ LV+AL S + ND+ GR++H ++++ G L +N ++ NS++N+YAK L A VF
Sbjct: 41 ERALVSALGSCASSNDVTCGRQIHCRVLKSG-LDSNGYICNSVLNMYAKCRLLADAESVF 99
Score = 31.2 bits (69), Expect = 3.7
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +3
Query: 360 LVAALSSYSKHNDLENGRRVHAQIVRKGLLKTNVFVGNSLINLYAKSGSLVKAREVFER 536
+V+ S+ S LE G+R H + + N + ++I++YAK GS+ A +F +
Sbjct: 441 MVSVFSAISSLGSLEEGKRAH-DYLNFSTIPPNDNLTAAIIDMYAKCGSIETALNIFHQ 498
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing
protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32
PE=3 SV=1
Length = 715
Score = 47.4 bits (111), Expect = 5e-05
Identities = 20/59 (33%), Positives = 40/59 (67%)
Frame = +3
Query: 360 LVAALSSYSKHNDLENGRRVHAQIVRKGLLKTNVFVGNSLINLYAKSGSLVKAREVFER 536
L + L +S++ D+ G+ +H ++RKG+ ++V++G+SL+++YAKS + + VF R
Sbjct: 245 LSSVLPIFSEYVDVIKGKEIHGYVIRKGI-DSDVYIGSSLVDMYAKSARIEDSERVFSR 302
Score = 40.0 bits (92), Expect = 0.008
Identities = 15/46 (32%), Positives = 34/46 (73%)
Frame = +3
Query: 399 LENGRRVHAQIVRKGLLKTNVFVGNSLINLYAKSGSLVKAREVFER 536
L G+++H ++R G +N+F+ ++L+++Y+K G++ AR++F+R
Sbjct: 359 LHLGKQLHGYVLRGGF-GSNIFIASALVDMYSKCGNIKAARKIFDR 403
Score = 37.0 bits (84), Expect = 0.067
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Frame = +3
Query: 357 ILVAALSSYSKHNDLENGRRVHAQIVRKGLLKTNVFVGNSLINLYAK---SGSLVKAREV 527
+ + L S + DL G VH IVR G+ +++ GN+L+N+YAK GS + V
Sbjct: 107 VFPSVLKSCTMMMDLRFGESVHGFIVRLGM-DCDLYTGNALMNMYAKLLGMGSKISVGNV 165
Query: 528 FERGQQ 545
F+ Q
Sbjct: 166 FDEMPQ 171
>sp|Q9CA56|PP121_ARATH Pentatricopeptide repeat-containing protein
At1g74600, chloroplastic OS=Arabidopsis thaliana
GN=PCMP-E69 PE=2 SV=1
Length = 895
Score = 47.4 bits (111), Expect = 5e-05
Identities = 23/62 (37%), Positives = 39/62 (62%)
Frame = +3
Query: 351 DEILVAALSSYSKHNDLENGRRVHAQIVRKGLLKTNVFVGNSLINLYAKSGSLVKAREVF 530
+ L A L+ S H L G+ +H +R G+ K + +G++L+N+Y+K GSL AR+V+
Sbjct: 551 ESTLAAVLTVCSSHPSLPRGKEIHGYTLRAGIDK-GMDLGSALVNMYSKCGSLKLARQVY 609
Query: 531 ER 536
+R
Sbjct: 610 DR 611
Score = 37.4 bits (85), Expect = 0.051
Identities = 24/67 (35%), Positives = 40/67 (59%)
Frame = +3
Query: 333 QYNLNGDEILVAALSSYSKHNDLENGRRVHAQIVRKGLLKTNVFVGNSLINLYAKSGSLV 512
Q L DE V +L S + L G++VH ++ GL+ ++ VG+SL LY+K GSL
Sbjct: 446 QEGLRTDEFSVCSLLSVL--DCLNLGKQVHGYTLKSGLV-LDLTVGSSLFTLYSKCGSLE 502
Query: 513 KAREVFE 533
++ ++F+
Sbjct: 503 ESYKLFQ 509
Score = 37.0 bits (84), Expect = 0.067
Identities = 22/59 (37%), Positives = 37/59 (62%)
Frame = +3
Query: 360 LVAALSSYSKHNDLENGRRVHAQIVRKGLLKTNVFVGNSLINLYAKSGSLVKAREVFER 536
++AA +S K L G+ V A++++ G +VFV ++++LYAK G + +A EVF R
Sbjct: 257 VLAACASLEK---LRFGKVVQARVIKCGA--EDVFVCTAIVDLYAKCGHMAEAMEVFSR 310
Score = 31.2 bits (69), Expect = 3.7
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = +3
Query: 408 GRRVHAQIVRKGLLKTNVFVGNSLINLYAKSGSLVKAREVFER 536
G +VHA I + GL T VG+SL+ +Y+K GS+ + F +
Sbjct: 671 GAQVHAYITKIGLC-TEPSVGSSLLTMYSKFGSIDDCCKAFSQ 712
>sp|Q1PFQ9|PPR62_ARATH Pentatricopeptide repeat-containing protein
At1g28690, mitochondrial OS=Arabidopsis thaliana
GN=PCMP-E34 PE=2 SV=2
Length = 520
Score = 46.6 bits (109), Expect = 8e-05
Identities = 26/73 (35%), Positives = 47/73 (64%)
Frame = +3
Query: 327 GAQYNLNGDEILVAALSSYSKHNDLENGRRVHAQIVRKGLLKTNVFVGNSLINLYAKSGS 506
G N++ ++ A S + H E G++VHAQI++ G+ T++ +G+SL+++YAK G
Sbjct: 268 GFHPNISTFASVIGACSVLTSH---EVGQQVHAQIMKSGVY-THIKMGSSLLDMYAKCGG 323
Query: 507 LVKAREVFERGQQ 545
+ AR VF++ Q+
Sbjct: 324 INDARRVFDQMQE 336
Score = 32.3 bits (72), Expect = 1.7
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = +3
Query: 372 LSSYSKHNDLENGRRVHAQIVRKGLLKTNVFVGNSLINLYAKSGSLVKAREVFER 536
L Y+K + + RRV Q+ K NVF S+I+ Y K+G+ +A E+F R
Sbjct: 315 LDMYAKCGGINDARRVFDQMQEK-----NVFSWTSMIDGYGKNGNPEEALELFTR 364
Score = 32.0 bits (71), Expect = 2.2
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +3
Query: 411 RRVHAQIVRKGLLKTNVFVGNSLINLYAKSGSLVKAREVFE 533
R VHA+I++ + +V + +L++ Y KSG L AR VFE
Sbjct: 160 RLVHARIIKCDVELDDVLI-TALVDTYVKSGKLESARTVFE 199
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein
At3g24000, mitochondrial OS=Arabidopsis thaliana
GN=PCMP-H87 PE=2 SV=1
Length = 633
Score = 46.6 bits (109), Expect = 8e-05
Identities = 23/51 (45%), Positives = 37/51 (72%)
Frame = +3
Query: 399 LENGRRVHAQIVRKGLLKTNVFVGNSLINLYAKSGSLVKAREVFERGQQSE 551
L GR VHA I++ + + ++ +GN+L+N+YAK GSL +AR+VFE+ Q +
Sbjct: 76 LIQGRIVHAHILQS-IFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRD 125
Score = 46.6 bits (109), Expect = 8e-05
Identities = 22/46 (47%), Positives = 34/46 (73%)
Frame = +3
Query: 399 LENGRRVHAQIVRKGLLKTNVFVGNSLINLYAKSGSLVKAREVFER 536
LE G+ VHA +++ G K F GN+L+++YAKSGS+ AR++F+R
Sbjct: 278 LEQGKWVHAYMIKSGE-KLVAFAGNTLLDMYAKSGSIHDARKIFDR 322
>sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protein
At5g15300 OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2
Length = 548
Score = 45.8 bits (107), Expect = 1e-04
Identities = 23/61 (37%), Positives = 41/61 (67%), Gaps = 4/61 (6%)
Frame = +3
Query: 360 LVAALSSYSKHNDLENGRRVHAQIVRKGLLKTNVFVG----NSLINLYAKSGSLVKAREV 527
+++ LS+ + DLE G+R+H I+ + ++++VG N+LI++YAK GS+ +A EV
Sbjct: 278 ILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEV 337
Query: 528 F 530
F
Sbjct: 338 F 338
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
A7Q306 |
| Definition |
tr|A7Q306|A7Q306_VITVI Chromosome chr12 scaffold_47, whole genome shotgun sequence OS=Vitis vinifera |
| Align length |
68 |
| Score (bit) |
57.4 |
| E-value |
5.0e-07 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DK952926|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_G16, 5'
(565 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|A7Q306|A7Q306_VITVI Chromosome chr12 scaffold_47, whole genom... 57 5e-07
tr|A5AWQ4|A5AWQ4_VITVI Putative uncharacterized protein OS=Vitis... 57 5e-07
tr|B7ZYC5|B7ZYC5_MAIZE Putative uncharacterized protein OS=Zea m... 56 2e-06
tr|Q2L3W7|Q2L3W7_WHEAT Selenium binding protein OS=Triticum aest... 54 6e-06
tr|Q8S263|Q8S263_ORYSJ Putative pentatricopeptide (PPR) repeat-c... 53 1e-05
tr|B8AB40|B8AB40_ORYSI Putative uncharacterized protein OS=Oryza... 53 1e-05
tr|A7QN82|A7QN82_VITVI Chromosome undetermined scaffold_131, who... 53 1e-05
tr|B8LKN6|B8LKN6_PICSI Putative uncharacterized protein OS=Picea... 52 2e-05
tr|A7PRL5|A7PRL5_VITVI Chromosome chr14 scaffold_27, whole genom... 52 2e-05
tr|A7PMY8|A7PMY8_VITVI Chromosome chr14 scaffold_21, whole genom... 52 2e-05
tr|Q2L3D0|Q2L3D0_BRASY Selenium binding protein OS=Brachypodium ... 52 3e-05
tr|A9U2Q7|A9U2Q7_PHYPA Predicted protein OS=Physcomitrella paten... 52 3e-05
tr|Q8S0S0|Q8S0S0_ORYSJ Selenium-binding protein-like OS=Oryza sa... 51 4e-05
tr|A2WXP3|A2WXP3_ORYSI Putative uncharacterized protein OS=Oryza... 51 4e-05
tr|Q337S8|Q337S8_ORYSJ Pentatricopeptide, putative (Putative unc... 51 5e-05
tr|A9T8E9|A9T8E9_PHYPA Predicted protein OS=Physcomitrella paten... 51 5e-05
tr|A7QI67|A7QI67_VITVI Chromosome chr17 scaffold_101, whole geno... 51 5e-05
tr|A5C5E6|A5C5E6_VITVI Putative uncharacterized protein OS=Vitis... 51 5e-05
tr|Q2QUQ5|Q2QUQ5_ORYSJ Pentatricopeptide, putative, expressed OS... 50 6e-05
tr|B8LQA8|B8LQA8_PICSI Putative uncharacterized protein OS=Picea... 50 6e-05
tr|B7U9V0|B7U9V0_CARAS AT5G09950-like protein OS=Cardaminopsis a... 50 6e-05
tr|A7P4V6|A7P4V6_VITVI Chromosome chr4 scaffold_6, whole genome ... 50 6e-05
tr|A3CGD4|A3CGD4_ORYSJ Putative uncharacterized protein OS=Oryza... 50 6e-05
tr|A7R1A1|A7R1A1_VITVI Chromosome undetermined scaffold_342, who... 50 8e-05
tr|A7P9K4|A7P9K4_VITVI Chromosome chr3 scaffold_8, whole genome ... 50 8e-05
tr|A5AX00|A5AX00_VITVI Putative uncharacterized protein OS=Vitis... 50 8e-05
tr|A2ZUX2|A2ZUX2_ORYSJ Putative uncharacterized protein OS=Oryza... 50 8e-05
tr|A2WS00|A2WS00_ORYSI Putative uncharacterized protein OS=Oryza... 50 8e-05
tr|Q5SMW8|Q5SMW8_ORYSJ Os06g0185700 protein OS=Oryza sativa subs... 50 1e-04
tr|Q5W963|Q5W963_PHYPA PPR1106-17 OS=Physcomitrella patens PE=2 ... 49 1e-04
>tr|A7Q306|A7Q306_VITVI Chromosome chr12 scaffold_47, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00029102001
PE=4 SV=1
Length = 978
Score = 57.4 bits (137), Expect = 5e-07
Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 4/68 (5%)
Frame = +3
Query: 342 LNGDEILVAALSSYSKHNDLENGRR----VHAQIVRKGLLKTNVFVGNSLINLYAKSGSL 509
+N D +V LS++S+ + LE GRR VHA ++R GL V +GN L+N+YAKSG++
Sbjct: 380 INSDSYVVL-LSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAI 438
Query: 510 VKAREVFE 533
A VFE
Sbjct: 439 ADACSVFE 446
Score = 37.0 bits (84), Expect(2) = 0.10
Identities = 18/63 (28%), Positives = 35/63 (55%)
Frame = +3
Query: 345 NGDEILVAALSSYSKHNDLENGRRVHAQIVRKGLLKTNVFVGNSLINLYAKSGSLVKARE 524
+ E + ++ Y E R +H Q ++ G + N+F+ N+LIN+Y + G L A++
Sbjct: 69 SSSETFESLINRYQGSCCSEEARELHLQSIKYGFVG-NLFLSNTLINIYVRIGDLGSAQK 127
Query: 525 VFE 533
+F+
Sbjct: 128 LFD 130
Score = 22.3 bits (46), Expect(2) = 0.10
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +1
Query: 523 KYLKEVSNRNVISW 564
K E+SNRN+++W
Sbjct: 127 KLFDEMSNRNLVTW 140
>tr|A5AWQ4|A5AWQ4_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_024322 PE=4 SV=1
Length = 1539
Score = 57.4 bits (137), Expect = 5e-07
Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 4/68 (5%)
Frame = +3
Query: 342 LNGDEILVAALSSYSKHNDLENGRR----VHAQIVRKGLLKTNVFVGNSLINLYAKSGSL 509
+N D +V LS++S+ + LE GRR VHA ++R GL V +GN L+N+YAKSG++
Sbjct: 853 INSDSYVVL-LSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAI 911
Query: 510 VKAREVFE 533
A VFE
Sbjct: 912 ADACSVFE 919
Score = 37.0 bits (84), Expect(2) = 0.10
Identities = 18/63 (28%), Positives = 35/63 (55%)
Frame = +3
Query: 345 NGDEILVAALSSYSKHNDLENGRRVHAQIVRKGLLKTNVFVGNSLINLYAKSGSLVKARE 524
+ E + ++ Y E R +H Q ++ G + N+F+ N+LIN+Y + G L A++
Sbjct: 542 SSSETFESLINRYQGSCCSEEARELHLQSIKYGFVG-NLFLSNTLINIYVRIGDLGSAQK 600
Query: 525 VFE 533
+F+
Sbjct: 601 LFD 603
Score = 22.3 bits (46), Expect(2) = 0.10
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +1
Query: 523 KYLKEVSNRNVISW 564
K E+SNRN+++W
Sbjct: 600 KLFDEMSNRNLVTW 613
Score = 34.7 bits (78), Expect = 3.7
Identities = 19/59 (32%), Positives = 35/59 (59%)
Frame = +3
Query: 360 LVAALSSYSKHNDLENGRRVHAQIVRKGLLKTNVFVGNSLINLYAKSGSLVKAREVFER 536
+++A+SS S H E ++HA +V K L + +GN+L++ Y K G + + ++F R
Sbjct: 1069 ILSAVSSLSLH---EVSHQIHA-LVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFAR 1123
>tr|B7ZYC5|B7ZYC5_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 530
Score = 55.8 bits (133), Expect = 2e-06
Identities = 26/54 (48%), Positives = 40/54 (74%)
Frame = +3
Query: 375 SSYSKHNDLENGRRVHAQIVRKGLLKTNVFVGNSLINLYAKSGSLVKAREVFER 536
S++++ LE GR VHA +++ G K FVGN+++ +YAKSGS+V AR+VF+R
Sbjct: 167 SAFARIGALEQGRWVHAHLIKSGQ-KLTAFVGNTMLGMYAKSGSMVDARKVFDR 219
>tr|Q2L3W7|Q2L3W7_WHEAT Selenium binding protein OS=Triticum
aestivum GN=sbp-1B PE=4 SV=1
Length = 624
Score = 53.9 bits (128), Expect = 6e-06
Identities = 26/57 (45%), Positives = 40/57 (70%)
Frame = +3
Query: 366 AALSSYSKHNDLENGRRVHAQIVRKGLLKTNVFVGNSLINLYAKSGSLVKAREVFER 536
+ SS ++ LE G+ VHA ++ K K FVGN+L+++YAKSGS++ AR+VF+R
Sbjct: 258 SVFSSIARLGALEQGKWVHAHVI-KSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDR 313
Score = 37.0 bits (84), Expect = 0.74
Identities = 17/60 (28%), Positives = 38/60 (63%)
Frame = +3
Query: 372 LSSYSKHNDLENGRRVHAQIVRKGLLKTNVFVGNSLINLYAKSGSLVKAREVFERGQQSE 551
+++ ++ +LE+ R++HA + + F+ NSLI++Y K S++ AR VF++ ++ +
Sbjct: 58 ITACAQSKNLEDARKIHAHL-GSSRFAGDAFLDNSLIHMYCKCRSVLDARNVFDQMRRKD 116
Score = 36.2 bits (82), Expect = 1.3
Identities = 18/55 (32%), Positives = 35/55 (63%)
Frame = +3
Query: 372 LSSYSKHNDLENGRRVHAQIVRKGLLKTNVFVGNSLINLYAKSGSLVKAREVFER 536
L + + D GR++HA V+ G + +V+VG++L+++YA+ G + A VF++
Sbjct: 159 LKAAGAYADSGTGRQIHALAVKCGWHE-DVYVGSALLDMYARCGKMDMATAVFDK 212
>tr|Q8S263|Q8S263_ORYSJ Putative pentatricopeptide (PPR)
repeat-containing protein (Putative uncharacterized
protein) OS=Oryza sativa subsp. japonica GN=P0415C01.16
PE=4 SV=1
Length = 1062
Score = 52.8 bits (125), Expect = 1e-05
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Frame = +3
Query: 303 DISCSSVDGAQYNLNGDEILVAALSSYSK-HNDLENGRRVHAQIVRKGLLKTNVFVGNSL 479
+I + D A N++ +L++A++ +S L GR VHA ++R G + + V N L
Sbjct: 365 EIFMGARDSAAVNVDTYVVLLSAIAEFSTAEQGLRKGREVHAHVLRAGHIYRKIAVSNGL 424
Query: 480 INLYAKSGSLVKAREVFE 533
+N+YAK G++ KA VF+
Sbjct: 425 VNMYAKCGAIDKACRVFQ 442
Score = 34.7 bits (78), Expect = 3.7
Identities = 16/39 (41%), Positives = 26/39 (66%)
Frame = +3
Query: 417 VHAQIVRKGLLKTNVFVGNSLINLYAKSGSLVKAREVFE 533
+H ++V++GL ++F+ N L+N YAK L AR VF+
Sbjct: 87 LHLEVVKRGLTH-DLFLANHLVNSYAKGARLDAARRVFD 124
Score = 34.7 bits (78), Expect = 3.7
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +3
Query: 327 GAQYNLNGDEILVAAL-SSYSKHNDLENGRRVHAQIVRKGLLKTNVFVGNSLINLYAKSG 503
G + +L D ++ +AL YSK GR +A V + + N F NS+I+ YA+ G
Sbjct: 714 GLRSHLESDVVVESALVDMYSKC-----GRIDYASKVFHSMSQKNEFSWNSMISGYARHG 768
Query: 504 SLVKAREVFERGQQS 548
KA E+FE Q+S
Sbjct: 769 LGRKALEIFEEMQES 783
>tr|B8AB40|B8AB40_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_02646 PE=4 SV=1
Length = 952
Score = 52.8 bits (125), Expect = 1e-05
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Frame = +3
Query: 303 DISCSSVDGAQYNLNGDEILVAALSSYSK-HNDLENGRRVHAQIVRKGLLKTNVFVGNSL 479
+I + D A N++ +L++A++ +S L GR VHA ++R G + + V N L
Sbjct: 364 EIFMGARDSAAVNVDTYVVLLSAIAEFSTAEQGLRKGREVHAHVLRAGHIYRKIAVSNGL 423
Query: 480 INLYAKSGSLVKAREVFE 533
+N+YAK G++ KA VF+
Sbjct: 424 VNMYAKCGAIGKACRVFQ 441
Score = 34.7 bits (78), Expect = 3.7
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +3
Query: 327 GAQYNLNGDEILVAAL-SSYSKHNDLENGRRVHAQIVRKGLLKTNVFVGNSLINLYAKSG 503
G + +L D ++ +AL YSK GR +A V + + N F NS+I+ YA+ G
Sbjct: 713 GLRSHLESDVVVESALVDMYSKC-----GRIDYASKVFHSMSQKNEFSWNSMISGYARHG 767
Query: 504 SLVKAREVFERGQQS 548
KA E+FE Q+S
Sbjct: 768 LGRKALEIFEEMQES 782
Score = 34.3 bits (77), Expect = 4.8
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +3
Query: 417 VHAQIVRKGLLKTNVFVGNSLINLYAKSGSLVKAREVFE 533
+H +IV++GL ++F+ N L+N YAK L AR VF+
Sbjct: 86 LHLEIVKRGLTH-DLFLANHLVNSYAKGARLDAARGVFD 123
>tr|A7QN82|A7QN82_VITVI Chromosome undetermined scaffold_131, whole
genome shotgun sequence OS=Vitis vinifera
GN=GSVIVT00002423001 PE=4 SV=1
Length = 500
Score = 52.8 bits (125), Expect = 1e-05
Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Frame = +3
Query: 339 NLNGDEI-LVAALSSYSKHNDLENGRRVHAQIVRKGLLKTNVFVGNSLINLYAKSGSLVK 515
NL D + LV LSS ++ DL GR++H I+R + +VFVGN+L+++Y K G
Sbjct: 104 NLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANF 163
Query: 516 AREVFE 533
AR+VF+
Sbjct: 164 ARKVFQ 169
Score = 43.9 bits (102), Expect = 0.006
Identities = 25/61 (40%), Positives = 40/61 (65%)
Frame = +3
Query: 351 DEILVAALSSYSKHNDLENGRRVHAQIVRKGLLKTNVFVGNSLINLYAKSGSLVKAREVF 530
D LVA L+S + LE G+ VHA + R + + + F+GN+L+++YAK GS+ +A VF
Sbjct: 211 DVTLVAVLNSCANLGVLELGKWVHAYLDRNQI-RADGFIGNALVDMYAKCGSIDQACWVF 269
Query: 531 E 533
+
Sbjct: 270 Q 270
>tr|B8LKN6|B8LKN6_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 394
Score = 52.4 bits (124), Expect = 2e-05
Identities = 25/78 (32%), Positives = 50/78 (64%), Gaps = 6/78 (7%)
Frame = +3
Query: 336 YNLNGDEI------LVAALSSYSKHNDLENGRRVHAQIVRKGLLKTNVFVGNSLINLYAK 497
Y + G+++ + + L + ++ +DL+ G+ +H I+R+GL + VGN+LI++YAK
Sbjct: 203 YEMQGEDVKANYVTVASVLPACAQLSDLQQGKEIHGYIIRRGL-DLGIVVGNALIDMYAK 261
Query: 498 SGSLVKAREVFERGQQSE 551
GS+ A++VF++ Q +
Sbjct: 262 CGSIGSAQKVFDKMLQRD 279
Score = 39.3 bits (90), Expect = 0.15
Identities = 19/57 (33%), Positives = 37/57 (64%)
Frame = +3
Query: 366 AALSSYSKHNDLENGRRVHAQIVRKGLLKTNVFVGNSLINLYAKSGSLVKAREVFER 536
+ L++ ++ L G+ ++ +I+ KG + +V V N+LIN++ K GS+ AR VF++
Sbjct: 118 SVLNACARLASLSEGKLIYDEIISKGC-EMDVIVENALINMFMKCGSIEDARRVFDK 173
Score = 33.5 bits (75), Expect = 8.2
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +3
Query: 384 SKHNDLENGRRVHAQIVRKGLLKTNVFVGNSLINLYAKSGSLVKAREVFE 533
+K L ++VHA ++ G+L+ V L+NLY K GSL AR F+
Sbjct: 22 TKAKTLAEAKQVHAHMLLTGILRIPS-VETKLLNLYVKCGSLPDARLAFD 70
>tr|A7PRL5|A7PRL5_VITVI Chromosome chr14 scaffold_27, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00022551001
PE=4 SV=1
Length = 673
Score = 52.4 bits (124), Expect = 2e-05
Identities = 29/71 (40%), Positives = 45/71 (63%)
Frame = +3
Query: 324 DGAQYNLNGDEILVAALSSYSKHNDLENGRRVHAQIVRKGLLKTNVFVGNSLINLYAKSG 503
+G Q N L++ LS + L++GR+VHA++V K ++VFV + LI +Y K G
Sbjct: 294 EGVQSNFPS---LISVLSVCASLASLDHGRQVHAELV-KSQFDSDVFVASVLITMYVKCG 349
Query: 504 SLVKAREVFER 536
LVKAR++F+R
Sbjct: 350 DLVKARQIFDR 360
>tr|A7PMY8|A7PMY8_VITVI Chromosome chr14 scaffold_21, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00020997001
PE=4 SV=1
Length = 515
Score = 52.4 bits (124), Expect = 2e-05
Identities = 26/62 (41%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Frame = +3
Query: 351 DEI-LVAALSSYSKHNDLENGRRVHAQIVRKGLLKTNVFVGNSLINLYAKSGSLVKAREV 527
DE+ +++ LS+ + DL+ G+R+H I G +V +GN+LI++YAK GS+V+A EV
Sbjct: 240 DEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEV 299
Query: 528 FE 533
F+
Sbjct: 300 FQ 301
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