DK952901
Clone id TST38A01NGRL0015_F14
Library
Length 551
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0015_F14. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence
TACCCACAGAGCAGAAATCTCTTGCCATTTGTTACTTCTTTTATTCTTTATTTTTTTTGT
GTTAGTAAGTCACCTCCTTTTTTGGAAGAAAAAAGTATTCTCGAATAATCCGTAATCTTG
ATACCAGGGATGGAAACTTTAGATGAGATTTGATGTACATATAAAAGAAAATTTTTACTC
GATTCAAGGGCATCTTTATGTTGAAGATGCTCAATGTACTTGTAGGTTTGCCTGTTCCTG
TTTATGTTTCCACTTGAAGACTTTGTGCTCCCTTCTATAGAAGAAAAATGTTCCATTTGT
AGATTATGCATGACAATCGGTAGTCATGCTCTGTGTGTGTGTGTGTGTGTGTGCGCACGC
CCGTGCGCACATGCCACCAAGACGGGCATATCGTCACACCGTCTTTAGGTCATTGGCAGC
CAACATATTGGGAGGTCATTTTTGGCAAGCTTGAAGGGCACATTCCTGGATGTCCCTTCT
TCTTCTCTCATTGTTGATTGGAAGGCTATCACCACCTTGCGTTTGGAATGGCATGGCCGG
CAATCCTCTCT
■■Homology search results ■■ -
sp_hit_id Q9ZR72
Definition sp|Q9ZR72|MDR1_ARATH Multidrug resistance protein 1 OS=Arabidopsis thaliana
Align length 45
Score (bit) 31.2
E-value 3.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK952901|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_F14, 5'
(551 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9ZR72|MDR1_ARATH Multidrug resistance protein 1 OS=Arabidops... 31 3.5

>sp|Q9ZR72|MDR1_ARATH Multidrug resistance protein 1 OS=Arabidopsis
thaliana GN=MDR1 PE=1 SV=1
Length = 1286

Score = 31.2 bits (69), Expect = 3.5
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +1

Query: 409 VIGSQHIGRSFLASLKGTFLDVPSSSLIVDWKAITTLRLEWHGRQ 543
++GS G+S + SL F D S +++D + + TL+L W +Q
Sbjct: 401 LVGSSGSGKSTVVSLIERFYDPNSGQVLLDGQDLKTLKLRWLRQQ 445


tr_hit_id A8A8G8
Definition tr|A8A8G8|A8A8G8_IGNH4 Anaerobic ribonucleoside-triphosphate reductase OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125)
Align length 47
Score (bit) 34.3
E-value 4.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK952901|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_F14, 5'
(551 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A8A8G8|A8A8G8_IGNH4 Anaerobic ribonucleoside-triphosphate red... 34 4.5
tr|B7BED8|B7BED8_9PORP Putative uncharacterized protein OS=Parab... 33 7.7
tr|Q7V044|Q7V044_PROMP Putative uncharacterized protein OS=Proch... 33 10.0
tr|Q4HKM0|Q4HKM0_CAMLA Quinone-reactive Ni/Fe hydrogenase, cytoc... 33 10.0
tr|B0J8C6|B0J8C6_RHILT Putative uncharacterized protein OS=Rhizo... 33 10.0
tr|Q9ZRG2|Q9ZRG2_SOLTU P-glycoprotein OS=Solanum tuberosum GN=pm... 33 10.0
tr|Q9NWL9|Q9NWL9_HUMAN CDNA FLJ20748 fis, clone HEP05772 OS=Homo... 33 10.0

>tr|A8A8G8|A8A8G8_IGNH4 Anaerobic ribonucleoside-triphosphate
reductase OS=Ignicoccus hospitalis (strain KIN4/I / DSM
18386 / JCM 14125) GN=Igni_0036 PE=4 SV=1
Length = 660

Score = 34.3 bits (77), Expect = 4.5
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = -1

Query: 215 IEHLQHKDALESSKNFLLYVHQISSKVSIPGIKITDYSRILFSSKKG 75
+E + KD + + K ++YVH++ V +P DYSR+L KKG
Sbjct: 70 VEDVMPKDMISAHKEGVVYVHKLPQSVFLPYCNGNDYSRVL---KKG 113


>tr|B7BED8|B7BED8_9PORP Putative uncharacterized protein
OS=Parabacteroides johnsonii DSM 18315
GN=PRABACTJOHN_03417 PE=4 SV=1
Length = 268

Score = 33.5 bits (75), Expect = 7.7
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +1

Query: 193 SLC*RCSMYL*VCLFLFMFPLEDFVLPSIEEKCSICRLC 309
S C C + +C + +F L+D VLP+ E+ C CRLC
Sbjct: 189 STCINCGKCIKICP-MHIFALKDTVLPTDEKNCIQCRLC 226


>tr|Q7V044|Q7V044_PROMP Putative uncharacterized protein
OS=Prochlorococcus marinus subsp. pastoris (strain
CCMP1378 / MED4) GN=PMM1444 PE=4 SV=1
Length = 413

Score = 33.1 bits (74), Expect = 10.0
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -1

Query: 221 KYIEHLQHKDALESSKNFLLYVHQISSKVSIPGIKITDYSRILFSSKK 78
K + L K+ SK +LL I K++I +I DY++I SSKK
Sbjct: 356 KIVGKLAAKEIFRKSKGYLLDPSHIIKKIAIKEPEIFDYTKIYLSSKK 403


>tr|Q4HKM0|Q4HKM0_CAMLA Quinone-reactive Ni/Fe hydrogenase,
cytochrome b subunit (HydC) OS=Campylobacter lari RM2100
GN=hyaC PE=4 SV=1
Length = 230

Score = 33.1 bits (74), Expect = 10.0
Identities = 18/76 (23%), Positives = 38/76 (50%)
Frame = -2

Query: 316 LSCIIYKWNIFLL*KGAQSLQVET*TGTGKPTSTLSIFNIKMPLNRVKIFFYMYIKSHLK 137
++C+I+K +F K + G+ S IFN+K+ + ++K FY+++ H
Sbjct: 75 IACVIFKTYLFFFDKKSD----------GERKSIKDIFNVKLWIEQIK--FYIFLGKHPH 122

Query: 136 FPSLVSRLRIIREYFF 89
+ + L+ + +FF
Sbjct: 123 LQGVYNPLQFVTYFFF 138


>tr|B0J8C6|B0J8C6_RHILT Putative uncharacterized protein
OS=Rhizobium leguminosarum bv. trifolii WSM1325
GN=RlegDRAFT_2511 PE=4 SV=1
Length = 645

Score = 33.1 bits (74), Expect = 10.0
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = -1

Query: 251 GNINRNRQTYKYIEHLQHKDALESSKNFLLYVHQISSKVSIPGIKITDYSRILFS 87
G++NR+ +TY + H Q L+ K L SKVS+P ++ TD + IL S
Sbjct: 439 GDVNRHMETY--LTHRQEWAVLDHDKPGLARSGAALSKVSLPALEATDGAGILLS 491


>tr|Q9ZRG2|Q9ZRG2_SOLTU P-glycoprotein OS=Solanum tuberosum GN=pmdr1
PE=2 SV=1
Length = 1313

Score = 33.1 bits (74), Expect = 10.0
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +1

Query: 409 VIGSQHIGRSFLASLKGTFLDVPSSSLIVDWKAITTLRLEWHGRQ 543
++GS G+S + SL F D S L++D I TL+L+W +Q
Sbjct: 427 LVGSSGSGKSTVVSLIERFYDPTSGQLMLDGNDIKTLKLKWLRQQ 471


>tr|Q9NWL9|Q9NWL9_HUMAN CDNA FLJ20748 fis, clone HEP05772 OS=Homo
sapiens PE=2 SV=1
Length = 147

Score = 33.1 bits (74), Expect = 10.0
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -3

Query: 462 CALQACQK*PPNMLAANDLKTV*RYARLGGMCARACAHTHTHTQSMTTDC 313
C+L ++ PP ML + + R G + CAHTHTHT + T C
Sbjct: 50 CSLGRGKEAPPCMLCRGPCRPLCLRGRRRGPLGK-CAHTHTHTHTHTRTC 98