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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK952814
Clone id TST38A01NGRL0015_B22
Library
Length 607
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0015_B22. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
CCAATTTAGACAGCTCCACTGAGAATTGCTCTCATGTAATTAGCCCTGTGAATGAATCAA
AGGCCTCCAAAATAGCTAGCTTAGCCTATCCCTGTACATTAGTAGAGAGACATGAAAGCG
AGGAGCTGCCGAAGTACATTAATCCAAGTATGGATGGCATGGCAGCTTACATAAAGCCTG
CGTTAGGTGCAATTAAGGAGGTGGAAGGGAGTGCTGGATGGCAAGACAATCTACAAATCT
CTGCATCCAAGGAAAGGCGATTCTCAAAGTCAAGCACCGTCAATGTTGAGAGTTCGAAGG
ATGCATCGCATGAGCATACGACGGCGGTCATTGACGTACCTATATCCAGAGGGATCAATA
ATTCCTGCCCTTTTAGCTTGTACAAGGAAGAGGCTATGCTGCATCAGTACCATCAGAATG
AGAAGGAATTAGCTCTCATAAATGTAGTGGCAACCCAACAACCCCAAAATTCAGCCAATC
TATATGTATCAAGGAAGCGCCCTGCCGCAGCTGCGCAGCTACCTTCCTTGGCCTCATCAT
CATACTCGAAGCGTGCTCATCTCAAAAATGTGAAAGGAATAGTGAGCACAACCACTGCTA
GTGCAAC
■■Homology search results ■■ -
sp_hit_id Q8WI26
Definition sp|Q8WI26|RPOC2_PSINU DNA-directed RNA polymerase subunit beta'' OS=Psilotum nudum
Align length 128
Score (bit) 33.5
E-value 0.86
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952814|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_B22, 5'
         (607 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8WI26|RPOC2_PSINU DNA-directed RNA polymerase subunit beta''...    33   0.86 
sp|Q1E2F4|DUS3_COCIM tRNA-dihydrouridine synthase 3 OS=Coccidioi...    32   3.3  
sp|P19898|VP10_RBSDV Protein S10 OS=Rice black streaked dwarf vi...    31   5.6  
sp|Q8CP76|EBH_STAES Extracellular matrix-binding protein ebh OS=...    30   7.3  
sp|Q5HPA2|EBH_STAEQ Extracellular matrix-binding protein ebh OS=...    30   7.3  
sp|A7E7N7|END3_SCLS1 Actin cytoskeleton-regulatory complex prote...    30   9.5  
sp|A6SIJ6|END3_BOTFB Actin cytoskeleton-regulatory complex prote...    30   9.5  

>sp|Q8WI26|RPOC2_PSINU DNA-directed RNA polymerase subunit beta''
           OS=Psilotum nudum GN=rpoC2 PE=3 SV=1
          Length = 1408

 Score = 33.5 bits (75), Expect = 0.86
 Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 7/128 (5%)
 Frame = +3

Query: 123 ELPKYINPSMDGMAAYIKPALGAIKEVEGSAGW--QDNLQISASKERRFSK-----SSTV 281
           ++ ++I    +G+ ++ + ++  I+   G   W  QDNL +S   + R         S +
Sbjct: 348 DIAEHIRIPFNGIISFAEDSVHPIRTRHGHPAWICQDNLSVSVKNKNRIHNVIIPYQSLI 407

Query: 282 NVESSKDASHEHTTAVIDVPISRGINNSCPFSLYKEEAMLHQYHQNEKELALINVVATQQ 461
            V++++    +   A +       IN S P    KE    H Y  +E E+    +V    
Sbjct: 408 LVQNNQYVESKQVIAEVR------INQSLP----KERVKKHIYSNSEGEMHWSTIVRHSP 457

Query: 462 PQNSANLY 485
               +N+Y
Sbjct: 458 QHRQSNVY 465


>sp|Q1E2F4|DUS3_COCIM tRNA-dihydrouridine synthase 3 OS=Coccidioides
           immitis GN=DUS3 PE=3 SV=1
          Length = 724

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 4/126 (3%)
 Frame = +3

Query: 99  LVERHESEELPKYINPSMDGMAAYIKPALGAIKEVEGSAGWQDNLQISASKERRFSKSST 278
           L++ H+SE LP  I P+            G +K+ + S   +  +QISA+K  +  K++ 
Sbjct: 362 LMKAHQSEVLPPTIKPNQ-----------GVVKDYDHSRDLKFGVQISANKPWQALKATE 410

Query: 279 VNVESSKDASHEHTTAVIDVPISRGINNSCPFSL-YKE---EAMLHQYHQNEKELALINV 446
           V       A   H   V        +N  CP  L Y++    A+L    + EK L  +N 
Sbjct: 411 V-----MTALCPHLRVV-------DLNCGCPIDLVYRDGAGSALLEHPSKLEKILRGMNA 458

Query: 447 VATQQP 464
           V+ + P
Sbjct: 459 VSNEVP 464


>sp|P19898|VP10_RBSDV Protein S10 OS=Rice black streaked dwarf virus
           GN=S10 PE=4 SV=1
          Length = 558

 Score = 30.8 bits (68), Expect = 5.6
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +3

Query: 228 NLQISASKERRFSKSSTVNVESSKDASHEHTTAVIDVPISR 350
           N  + + ++R   K+ + NV SS  +SHEHT  ++   ++R
Sbjct: 518 NNLLKSDRDRVLKKALSANVSSSNTSSHEHTQKIVLNKVTR 558


>sp|Q8CP76|EBH_STAES Extracellular matrix-binding protein ebh
            OS=Staphylococcus epidermidis (strain ATCC 12228) GN=ebh
            PE=4 SV=1
          Length = 9439

 Score = 30.4 bits (67), Expect = 7.3
 Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
 Frame = +3

Query: 18   TENCSHVISPVNESKASKIASLAYPCTLVERHESEELPKYINPSMDGMAAYIKPALGAIK 197
            T+  S V   +N+++A   +      ++ + HE ++   YIN ++    AY   A+  +K
Sbjct: 7056 TQTRSEVHQVINKAQALNDSMNTLRQSITDEHEVKQTSNYINETVGNQTAY-NNAVDRVK 7114

Query: 198  EV--EGSAGWQDNLQISASKERRFSKSSTVNVESSKDASH 311
            ++  + S    + L++         + +T NV+ SKDA H
Sbjct: 7115 QIINQTSNPTMNPLEV---------ERATSNVKISKDALH 7145


>sp|Q5HPA2|EBH_STAEQ Extracellular matrix-binding protein ebh
            OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A)
            GN=ebh PE=4 SV=2
          Length = 9439

 Score = 30.4 bits (67), Expect = 7.3
 Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
 Frame = +3

Query: 18   TENCSHVISPVNESKASKIASLAYPCTLVERHESEELPKYINPSMDGMAAYIKPALGAIK 197
            T+  S V   +N+++A   +      ++ + HE ++   YIN ++    AY   A+  +K
Sbjct: 7056 TQTRSEVHQVINKAQALNDSMNTLRQSITDEHEVKQTSNYINETVGNQTAY-NNAVDRVK 7114

Query: 198  EV--EGSAGWQDNLQISASKERRFSKSSTVNVESSKDASH 311
            ++  + S    + L++         + +T NV+ SKDA H
Sbjct: 7115 QIINQTSNPTMNPLEV---------ERATSNVKISKDALH 7145


>sp|A7E7N7|END3_SCLS1 Actin cytoskeleton-regulatory complex protein
           end3 OS=Sclerotinia sclerotiorum (strain ATCC 18683 /
           1980 / Ss-1) GN=end3 PE=3 SV=1
          Length = 400

 Score = 30.0 bits (66), Expect = 9.5
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +3

Query: 9   DSSTENCSHVISPVNESKASKIASLAYPCTLVERHESEELPKYINPSM 152
           D+   +  ++I+P      SK A+LA+   L  RHE   +P+ + PS+
Sbjct: 169 DTDVRSAWNLINPSAAPAISKDATLAFLHILNNRHEGYRIPRTVPPSL 216


>sp|A6SIJ6|END3_BOTFB Actin cytoskeleton-regulatory complex protein
           end3 OS=Botryotinia fuckeliana (strain B05.10) GN=end3
           PE=3 SV=1
          Length = 404

 Score = 30.0 bits (66), Expect = 9.5
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +3

Query: 9   DSSTENCSHVISPVNESKASKIASLAYPCTLVERHESEELPKYINPSM 152
           D+   +  ++I+P      SK A+LA+   L  RHE   +P+ I PS+
Sbjct: 173 DTDIRSAWNLINPSAAPAISKDATLAFLHILNNRHEGYRIPRTIPPSL 220
tr_hit_id B3NDW8
Definition tr|B3NDW8|B3NDW8_DROER GG13431 OS=Drosophila erecta
Align length 173
Score (bit) 37.0
E-value 0.89
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952814|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0015_B22, 5'
         (607 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3NDW8|B3NDW8_DROER GG13431 OS=Drosophila erecta GN=GG13431 P...    37   0.89 
tr|P83334|P83334_9LACT RepB OS=Lactococcus lactis GN=repB PE=4 SV=1    35   2.6  
tr|Q02V81|Q02V81_LACLS Replication initiator protein OS=Lactococ...    35   3.4  
tr|Q48700|Q48700_LACDL RepB protein OS=Lactobacillus delbrueckii...    35   3.4  
tr|Q48699|Q48699_9LACT RepB protein OS=Lactococcus lactis GN=rep...    35   3.4  
tr|Q223B5|Q223B5_RHOFD Allophanate hydrolase subunit 1 OS=Rhodof...    34   5.8  
tr|Q1M4V4|Q1M4V4_RHIL3 Putative urea amidohydrolyase homologue O...    34   5.8  
tr|A0NBN6|A0NBN6_ANOGA AGAP006776-PA OS=Anopheles gambiae GN=AGA...    34   5.8  
tr|B2H5T0|B2H5T0_BURPS Allophanate hydrolase, subunit 1 OS=Burkh...    34   7.6  
tr|Q39CD9|Q39CD9_BURS3 Allophanate hydrolase subunit 1 OS=Burkho...    33   9.9  

>tr|B3NDW8|B3NDW8_DROER GG13431 OS=Drosophila erecta GN=GG13431 PE=4
           SV=1
          Length = 932

 Score = 37.0 bits (84), Expect = 0.89
 Identities = 44/173 (25%), Positives = 60/173 (34%), Gaps = 15/173 (8%)
 Frame = +3

Query: 12  SSTENCSHVISPVNESKASKIASLAYPCTLVERHESEELPKYINPSMDGMAAYIKPALGA 191
           S T N    +SP  +SK+  +  +         H S+     +     G+AA  KP  GA
Sbjct: 235 SKTINVRLTVSPEGKSKSQPVVPVPVAAGFSSSHASK-----LKKLPTGLAAMSKPLAGA 289

Query: 192 ------IKEVEGSAGWQDNLQISASKERRFSKSSTV----NVESSKDA-----SHEHTTA 326
                    +  SAG   N +    + R+  KS       N E  KDA     +H HT A
Sbjct: 290 GVGSGGATALTTSAG---NRRQHRYRPRKLIKSDDEDDDSNSEKEKDAHTHTHTHTHTPA 346

Query: 327 VIDVPISRGINNSCPFSLYKEEAMLHQYHQNEKELALINVVATQQPQNSANLY 485
             D P   G         +  +A   +YHQ     A         P N  N Y
Sbjct: 347 AADQPSGSG--TKATGKSHHHQAQSARYHQKNNSRAEQCCTEQNTPDNGHNTY 397


>tr|P83334|P83334_9LACT RepB OS=Lactococcus lactis GN=repB PE=4 SV=1
          Length = 438

 Score = 35.4 bits (80), Expect = 2.6
 Identities = 24/91 (26%), Positives = 40/91 (43%)
 Frame = +3

Query: 150 MDGMAAYIKPALGAIKEVEGSAGWQDNLQISASKERRFSKSSTVNVESSKDASHEHTTAV 329
           + G+ A++ P    +KE  G  G + +L   ASK+  +SK + V    +    +  T A+
Sbjct: 323 LSGLQAHVYPLYDELKEARGLKGVETHLSYVASKQEGYSKRNVVKYLKTAIEGYLPTVAL 382

Query: 330 IDVPISRGINNSCPFSLYKEEAMLHQYHQNE 422
            D+      N   P SL +        +QNE
Sbjct: 383 QDLEQPERANYKKPRSLEEVAKDFLPDYQNE 413


>tr|Q02V81|Q02V81_LACLS Replication initiator protein OS=Lactococcus
           lactis subsp. cremoris (strain SK11) GN=LACR_E8 PE=4
           SV=1
          Length = 443

 Score = 35.0 bits (79), Expect = 3.4
 Identities = 25/92 (27%), Positives = 40/92 (43%)
 Frame = +3

Query: 147 SMDGMAAYIKPALGAIKEVEGSAGWQDNLQISASKERRFSKSSTVNVESSKDASHEHTTA 326
           +M G+A  + P    +KE  G  G + +L   ASK+  +SK + V    +    +  T A
Sbjct: 324 TMTGLAEKVYPLYDELKEARGLKGVETHLSYVASKQEGYSKRNVVKYLKTAIEGYLPTVA 383

Query: 327 VIDVPISRGINNSCPFSLYKEEAMLHQYHQNE 422
           + D+      N   P SL +        +QNE
Sbjct: 384 LQDLEQPERANYKKPRSLEEVAKDFLPDYQNE 415


>tr|Q48700|Q48700_LACDL RepB protein OS=Lactobacillus delbrueckii
           subsp. lactis GN=repB PE=4 SV=1
          Length = 441

 Score = 35.0 bits (79), Expect = 3.4
 Identities = 25/92 (27%), Positives = 40/92 (43%)
 Frame = +3

Query: 147 SMDGMAAYIKPALGAIKEVEGSAGWQDNLQISASKERRFSKSSTVNVESSKDASHEHTTA 326
           +M G+A  + P    +KE  G  G + +L   ASK+  +SK + V    +    +  T A
Sbjct: 322 TMTGLAEKVYPLYDELKEARGLKGVETHLSYVASKQEGYSKRNVVKYLKTAIEGYLPTVA 381

Query: 327 VIDVPISRGINNSCPFSLYKEEAMLHQYHQNE 422
           + D+      N   P SL +        +QNE
Sbjct: 382 LQDLEQPERANYKKPRSLEEVAKDFLPDYQNE 413


>tr|Q48699|Q48699_9LACT RepB protein OS=Lactococcus lactis GN=repB
           PE=4 SV=1
          Length = 441

 Score = 35.0 bits (79), Expect = 3.4
 Identities = 25/92 (27%), Positives = 40/92 (43%)
 Frame = +3

Query: 147 SMDGMAAYIKPALGAIKEVEGSAGWQDNLQISASKERRFSKSSTVNVESSKDASHEHTTA 326
           +M G+A  + P    +KE  G  G + +L   ASK+  +SK + V    +    +  T A
Sbjct: 322 TMTGLAEKVYPLYDELKEARGLKGVETHLSYVASKQEGYSKRNVVKYLKTAIEGYLPTVA 381

Query: 327 VIDVPISRGINNSCPFSLYKEEAMLHQYHQNE 422
           + D+      N   P SL +        +QNE
Sbjct: 382 LQDLEQPERANYKKPRSLEEVAKDFLPDYQNE 413


>tr|Q223B5|Q223B5_RHOFD Allophanate hydrolase subunit 1
           OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC
           BAA-621 / T118) GN=Rfer_0127 PE=4 SV=1
          Length = 294

 Score = 34.3 bits (77), Expect = 5.8
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +3

Query: 30  SHVISPVNESKASKIASLAYPCTLVERHESEELPKYINPSMDGMAAYI--KPALGAIKEV 203
           +H  SP   S    +A L +   +VER +  ++PKY+ P  D     I      G I  V
Sbjct: 142 AHAASPWFVSMVGFVAGLPFMFQMVERTKQIQVPKYLRPRTDTPKLTIGHGGCFGCIYSV 201

Query: 204 EGSAGWQ 224
            G+ G+Q
Sbjct: 202 RGAGGYQ 208


>tr|Q1M4V4|Q1M4V4_RHIL3 Putative urea amidohydrolyase homologue
           OS=Rhizobium leguminosarum bv. viciae (strain 3841)
           GN=pRL120151 PE=4 SV=1
          Length = 291

 Score = 34.3 bits (77), Expect = 5.8
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = +3

Query: 30  SHVISPVNESKASKIASLAYPCTLVERHESEELPKYINPSMDGMAAYI--KPALGAIKEV 203
           +H  SP   S    +A L +   +VER    E+PKY+ P  D     +      G I  V
Sbjct: 139 AHAGSPWFVSMVGFVAGLPFMYQMVERQRQIEVPKYLRPRTDTPKLTVGHGGCFGCIYSV 198

Query: 204 EGSAGWQ 224
            G+ G+Q
Sbjct: 199 RGAGGYQ 205


>tr|A0NBN6|A0NBN6_ANOGA AGAP006776-PA OS=Anopheles gambiae
            GN=AGAP006776 PE=4 SV=2
          Length = 4422

 Score = 34.3 bits (77), Expect = 5.8
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
 Frame = +3

Query: 210  SAGWQDNLQISASKERRFSKSSTVNVESSKDASHEHTTAVIDVPISRGINNSCPFSL--- 380
            S  ++  L  +A+    FS SST  +  S  A H+H      VP+S   +   P  L   
Sbjct: 4294 SMSFKSLLDFAANTNTNFSTSSTAGLFGSATAHHQHHQQQ-QVPLSMNQSAMLPLGLVPP 4352

Query: 381  -YKEEAMLHQYHQNEKELA-LINVVATQQPQNSAN 479
              +++  LHQ+ Q+++ +A L ++V T      +N
Sbjct: 4353 SQQQQQHLHQHQQHQQLVAGLQSIVPTSNSTGPSN 4387


>tr|B2H5T0|B2H5T0_BURPS Allophanate hydrolase, subunit 1
           OS=Burkholderia pseudomallei 1655 GN=BURPS1655_C0461
           PE=4 SV=1
          Length = 291

 Score = 33.9 bits (76), Expect = 7.6
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +3

Query: 30  SHVISPVNESKASKIASLAYPCTLVERHESEELPKYINPSMDGMAAYI--KPALGAIKEV 203
           +H  SP   S    +A L +   +VER +  ++PKY+ P  D     +      G I  V
Sbjct: 139 AHAGSPWFVSMVGFVAGLPFMYQMVEREQQLQVPKYLRPRTDTPKLTVGHGGCFGCIYSV 198

Query: 204 EGSAGWQ 224
            G+ G+Q
Sbjct: 199 RGAGGYQ 205


>tr|Q39CD9|Q39CD9_BURS3 Allophanate hydrolase subunit 1
           OS=Burkholderia sp. (strain 383) GN=Bcep18194_A6283 PE=4
           SV=1
          Length = 291

 Score = 33.5 bits (75), Expect = 9.9
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = +3

Query: 30  SHVISPVNESKASKIASLAYPCTLVERHESEELPKYINPSMDGMAAYI--KPALGAIKEV 203
           +H  SP   S    +A L +   +VER    E+PKY+ P  D     +      G I  V
Sbjct: 139 AHSGSPWFVSMVGFVAGLPFMYQMVERERQLEVPKYLRPRTDTPKLTVGHGGCFGCIYSV 198

Query: 204 EGSAGWQ 224
            G+ G+Q
Sbjct: 199 RGAGGYQ 205