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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK952721
Clone id TST38A01NGRL0014_N22
Library
Length 441
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0014_N22. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
TTNGGACTTGAGTCCTCGCGGCTCACAGCGAGGATCAGGAGTGGTGTTGCACCCGTGTCC
GCGCATGAATCAGGNAAGGGACGGATCCGTGTTTCCGGACTGAAGGGTGGATCGGTATAC
AACGGGTTGGCAAGGACACCGAGACTTCCGAGCTAGATCACCTATCTATGGATGACGATC
TCTACAAAGATTTGCAGAGAGCTTATAACCCCAAACTTGATCTCAAACCCCCTGAAAAGC
AAACTGTTATATATACCTCAATGCAAGCCAATTCCTGCGCAATAACAGGGGAGCAGTACG
CCGAGCCTGGATGCCCCACCCGGTGCCCCCGAACCACCCTTGACAGGAGGTCACAATTCT
TTACTGGGATAGCTGCACCATTGTGGAGTTACCTCTGATTCGAGGAAATGGCGCTCGTCC
ACAAAGGGGCCGACAACAAAT
■■Homology search results ■■ -
sp_hit_id Q6NH62
Definition sp|Q6NH62|ACNR_CORDI HTH-type transcriptional repressor acnR OS=Corynebacterium diphtheriae
Align length 68
Score (bit) 33.9
E-value 0.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952721|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0014_N22, 5'
         (441 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6NH62|ACNR_CORDI HTH-type transcriptional repressor acnR OS=...    34   0.30 
sp|Q71F56|MD13L_HUMAN Mediator of RNA polymerase II transcriptio...    34   0.31 
sp|Q6JPI3|MD13L_MOUSE Mediator of RNA polymerase II transcriptio...    33   0.41 
sp|P28797|GRN_CAVPO Granulins (Fragment) OS=Cavia porcellus GN=G...    33   0.53 
sp|Q4AC94|C2CD3_HUMAN C2 domain-containing protein 3 OS=Homo sap...    32   1.2  
sp|Q2IJJ5|PURT_ANADE Phosphoribosylglycinamide formyltransferase...    30   4.4  
sp|Q8WQ86|EB1_DICDI Microtubule-associated protein RP/EB family ...    30   4.5  
sp|Q3Z9B1|Y444_DEHE1 UPF0082 protein DET0444 OS=Dehalococcoides ...    29   7.5  
sp|Q3HTN1|VMSA_TRIST Zinc metalloproteinase-disintegrin stejniha...    29   7.5  
sp|Q9D306|MGT4C_MOUSE Alpha-1,3-mannosyl-glycoprotein 4-beta-N-a...    29   7.5  
sp|Q4R4A8|MGT4C_MACFA Alpha-1,3-mannosyl-glycoprotein 4-beta-N-a...    29   7.5  
sp|Q9UBM8|MGT4C_HUMAN Alpha-1,3-mannosyl-glycoprotein 4-beta-N-a...    29   7.5  
sp|Q9BZW8|CD244_HUMAN Natural killer cell receptor 2B4 OS=Homo s...    29   7.5  
sp|O17486|THIO_ECHGR Thioredoxin OS=Echinococcus granulosus GN=T...    29   9.8  
sp|Q92835|SHIP1_HUMAN Phosphatidylinositol-3,4,5-trisphosphate 5...    29   10.0 

>sp|Q6NH62|ACNR_CORDI HTH-type transcriptional repressor acnR
           OS=Corynebacterium diphtheriae GN=acnR PE=3 SV=1
          Length = 190

 Score = 33.9 bits (76), Expect = 0.30
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
 Frame = +3

Query: 15  LAAHSEDQEWCCTRVRA*IRXGTDPCFRTEGWIGIQRVGKDTETSELD---HLS-MDDDL 182
           + AH E  +W  TR+       TDP FR   WI  QRV  D     L    HL  M DD+
Sbjct: 86  MLAHPERHDWLATRLEITKMLRTDPSFRNR-WIEHQRVLDDAVLERLQRNAHLGRMRDDV 144

Query: 183 YKDLQRAY 206
             D+   Y
Sbjct: 145 PIDVLHTY 152


>sp|Q71F56|MD13L_HUMAN Mediator of RNA polymerase II transcription
            subunit 13-like OS=Homo sapiens GN=MED13L PE=1 SV=1
          Length = 2210

 Score = 33.9 bits (76), Expect = 0.31
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +1

Query: 172  MTISTKICRELITPNLISNPLKSKLLYIPQCKPIPAQ*QGSSTPSLD---APPGAPEPP 339
            + +  ++CR  + P L +  L S LL  P+ +  PA  QG +TP      AP G+  PP
Sbjct: 1499 LKLYAQVCRHHLAPYLATLQLDSSLLIPPKYQTPPAAAQGQATPGNAGPLAPNGSAAPP 1557


>sp|Q6JPI3|MD13L_MOUSE Mediator of RNA polymerase II transcription
            subunit 13-like OS=Mus musculus GN=Med13l PE=2 SV=2
          Length = 2207

 Score = 33.5 bits (75), Expect = 0.41
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
 Frame = +1

Query: 172  MTISTKICRELITPNLISNPLKSKLLYIPQCKPIPAQ*QGSSTP----SLDAPPGAPEPP 339
            + +  ++CR  + P L +  L S LL  P+ +  PA+ QG +TP    SL +  G+  PP
Sbjct: 1498 LKLYAQVCRHHLAPYLATLQLDSGLLMPPKHQSPPAEAQGQATPGNAGSLPSNSGSGAPP 1557


>sp|P28797|GRN_CAVPO Granulins (Fragment) OS=Cavia porcellus GN=GRN
           PE=1 SV=1
          Length = 591

 Score = 33.1 bits (74), Expect = 0.53
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = +1

Query: 193 CRELITPNLISNPLKSKLLYIPQCKPIPAQ*QGSSTPSLDAPPGAPEPP 339
           C E    +   +  +  LL +P  +  PAQ    S PS   PPG P PP
Sbjct: 321 CPERFRCHTEKDTCEQGLLQVPWAQKTPAQPSRPSQPSPPGPPGPPSPP 369


>sp|Q4AC94|C2CD3_HUMAN C2 domain-containing protein 3 OS=Homo sapiens
            GN=C2CD3 PE=1 SV=3
          Length = 2353

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 17/75 (22%), Positives = 33/75 (44%)
 Frame = +3

Query: 156  DHLSMDDDLYKDLQRAYNPKLDLKPPEKQTVIYTSMQANSCAITGEQYAEPGCPTRCPRT 335
            + L +        +RA NP L  +    Q+++    +A+   + GE  +    P  CP  
Sbjct: 2121 EELMVKSSFLSSPERAVNPHLPRQGSPSQSLVACECEASKARVGGESASANPQPIPCPTL 2180

Query: 336  TLDRRSQFFTGIAAP 380
            +  ++S  F G ++P
Sbjct: 2181 SGAQQSSTFVGWSSP 2195


>sp|Q2IJJ5|PURT_ANADE Phosphoribosylglycinamide formyltransferase 2
           OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=purT
           PE=3 SV=1
          Length = 387

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 278 RNNRGAVRRAWMPHPVPP 331
           R  RG  + +W PHPVPP
Sbjct: 215 RQERGDYQESWQPHPVPP 232


>sp|Q8WQ86|EB1_DICDI Microtubule-associated protein RP/EB family
           member 1 OS=Dictyostelium discoideum GN=eb1 PE=1 SV=1
          Length = 506

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +1

Query: 208 TPNLISNPLKSKLLYI--PQCKPIPAQ*QGSSTPSLDAPPGAPEP 336
           TP+ IS P+      I  P  KP P     S+T ++  PP  P+P
Sbjct: 190 TPSSISKPVSKPTPSISKPVTKPTPTTTSTSTTTTVSTPPSTPKP 234


>sp|Q3Z9B1|Y444_DEHE1 UPF0082 protein DET0444 OS=Dehalococcoides
           ethenogenes (strain 195) GN=DET0444 PE=3 SV=1
          Length = 251

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +3

Query: 93  FRTEGWIGIQRVGKDTETSELDHLSM---DDDLYKDLQRAYNPKLDLKPPEKQ 242
           F T+G IG++ VG DT+   L  + M   D ++ +D    Y    D++   +Q
Sbjct: 134 FETKGVIGVETVGLDTDELSLKAIDMGAEDVNIEEDYMEIYTAMPDMEKVRQQ 186


>sp|Q3HTN1|VMSA_TRIST Zinc metalloproteinase-disintegrin
           stejnihagin-A OS=Trimeresurus stejnegeri PE=2 SV=1
          Length = 600

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +3

Query: 174 DDLYKDLQRAYNPKLDLKPPEKQTVIYTSMQANSCAITGEQYAEPGCPTRCPRTTLDRRS 353
           +D ++    AYNP+  L  P K  +I   +  N     GE+  + G P  C     D  S
Sbjct: 370 EDYHQSFLTAYNPQCILNAPSKTDIITPPVCGNELLEEGEE-CDCGSPENCQYQCCDAAS 428


>sp|Q9D306|MGT4C_MOUSE Alpha-1,3-mannosyl-glycoprotein
           4-beta-N-acetylglucosaminyltransferase C OS=Mus musculus
           GN=Mgat4c PE=2 SV=1
          Length = 478

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
 Frame = +3

Query: 192 LQRAYN-PKLDLKPPEKQTVIYTSMQANSCAITGEQYAEPGCPTRCPRTTLDRRSQFFTG 368
           L+R YN P+  ++   KQ V Y  +  N CA T + Y       RC R  L    +    
Sbjct: 185 LKRNYNDPEDRVRFRSKQNVDYAFL-LNFCANTSDYYVMLEDDVRCSRNFLTAIKKVIAS 243

Query: 369 IAAPLWSYL*FEEMALVHK 425
           +    W  L F ++  + K
Sbjct: 244 LEGTYWVTLEFSKLGYIGK 262
tr_hit_id B0SUQ9
Definition tr|B0SUQ9|B0SUQ9_CAUSK Acriflavin resistance protein OS=Caulobacter sp. (strain K31)
Align length 43
Score (bit) 36.6
E-value 0.64
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952721|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0014_N22, 5'
         (441 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0SUQ9|B0SUQ9_CAUSK Acriflavin resistance protein OS=Caulobac...    37   0.64 
tr|Q6GQS5|Q6GQS5_MOUSE Med13l protein (Fragment) OS=Mus musculus...    33   5.4  
tr|B6KJR9|B6KJR9_TOXGO SWIB/MDM2 domain-containing protein OS=To...    33   5.4  
tr|Q5B0Z4|Q5B0Z4_EMENI Putative uncharacterized protein OS=Emeri...    33   5.4  
tr|P90493|P90493_HHV2 RS1 protein OS=Human herpesvirus 2 GN=RS1 ...    33   7.0  
tr|A8I804|A8I804_CHLRE Predicted protein OS=Chlamydomonas reinha...    33   7.0  
tr|B6H038|B6H038_PENCH Pc12g02600 protein OS=Penicillium chrysog...    33   7.0  
tr|B5WPX8|B5WPX8_9BURK Putative uncharacterized protein OS=Burkh...    33   9.2  
tr|A7PWP7|A7PWP7_VITVI Chromosome chr19 scaffold_35, whole genom...    33   9.2  
tr|B8DL10|B8DL10_DESVM Glycosyl transferase family 2 OS=Desulfov...    33   9.2  

>tr|B0SUQ9|B0SUQ9_CAUSK Acriflavin resistance protein OS=Caulobacter
           sp. (strain K31) GN=Caul_0806 PE=4 SV=1
          Length = 1042

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = -2

Query: 146 SLGVLANPLYTDPPFSPETRIRPXPDSCADTGATPLLILAVSR 18
           SL  +A+P  + PP  PE  IRP PD  A  G +   I A++R
Sbjct: 685 SLSTVADPRPSSPPSGPEIVIRPKPDEAARLGVSAADIAAIAR 727


>tr|Q6GQS5|Q6GQS5_MOUSE Med13l protein (Fragment) OS=Mus musculus
            GN=Med13l PE=2 SV=1
          Length = 1879

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
 Frame = +1

Query: 172  MTISTKICRELITPNLISNPLKSKLLYIPQCKPIPAQ*QGSSTP----SLDAPPGAPEPP 339
            + +  ++CR  + P L +  L S LL  P+ +  PA+ QG +TP    SL +  G+  PP
Sbjct: 1161 LKLYAQVCRHHLAPYLATLQLDSGLLMPPKHQSPPAEAQGQATPGNAGSLPSNSGSGAPP 1220


>tr|B6KJR9|B6KJR9_TOXGO SWIB/MDM2 domain-containing protein
           OS=Toxoplasma gondii ME49 GN=TGME49_032220 PE=4 SV=1
          Length = 1073

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -2

Query: 401 ESEVTPQWCSYPSKEL*PPVKGGSGAPGGASRLGVLLPCYCAGIGLH 261
           +SE   + C +PS    PP      APGGA+ L V +P   +G+ +H
Sbjct: 726 KSEEDQRKCLFPSHSASPPPHPLPSAPGGATSLSVSIPSEESGVYIH 772


>tr|Q5B0Z4|Q5B0Z4_EMENI Putative uncharacterized protein
           OS=Emericella nidulans GN=AN5786.2 PE=4 SV=1
          Length = 707

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = +3

Query: 138 TETSELDHL-SMDDDLYKDLQRAYNPKLDLKPPEKQTVIYTSMQANSCAITG 290
           T    L H  S  D LYK + + Y  KL   PP K   I     + SC I G
Sbjct: 28  TRAENLSHTASQIDSLYKSILKQYAKKLPTAPPRKTNQITRRFASGSCLILG 79


>tr|P90493|P90493_HHV2 RS1 protein OS=Human herpesvirus 2 GN=RS1 PE=4
            SV=1
          Length = 1318

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 26/103 (25%), Positives = 40/103 (38%)
 Frame = +1

Query: 31   RIRSGVAPVSAHESGKGRIRVSGLKGGSVYNGLARTPRLPS*ITYLWMTISTKICRELIT 210
            R+R  +      E+    +R   L  G++   L R+PRL S  +            + + 
Sbjct: 710  RLRGDLRVAGGSEAAVAAVRAVSLVAGALGPALPRSPRLLS--SAAAAAADLLFQNQSLR 767

Query: 211  PNLISNPLKSKLLYIPQCKPIPAQ*QGSSTPSLDAPPGAPEPP 339
            P L      +  L  P   P  A+ + S  P+   P GAP PP
Sbjct: 768  PLLADTVAAADSLAAPASAPREARKRKSPAPARAPPGGAPRPP 810


>tr|A8I804|A8I804_CHLRE Predicted protein OS=Chlamydomonas
           reinhardtii GN=CHLREDRAFT_166267 PE=4 SV=1
          Length = 424

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 33/103 (32%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
 Frame = +1

Query: 37  RSGVAPVSAHESGKGRIRVSGLKGGSVYNG--LARTPRLPS*ITYLWMTISTKICRELIT 210
           R GV      E G G +   GL   SV +   L  T   P+  TYL ++  ++  R    
Sbjct: 184 RRGVGEDGGDEGGCGDLSGVGLCQMSVLDNPDLPGTNCCPT--TYLNLSNPSRSPRPGAA 241

Query: 211 PNLISNPLKSKLLYIPQCKPIPAQ*QGSSTPSLDAPPGAPEPP 339
           P   + PL     Y+P   P PA    S  P   A P +PEPP
Sbjct: 242 PGSRAPPLPP--FYLPDPSPEPATMPTSPPPVYGASPPSPEPP 282


>tr|B6H038|B6H038_PENCH Pc12g02600 protein OS=Penicillium
           chrysogenum Wisconsin 54-1255 GN=Pc12g02600 PE=4 SV=1
          Length = 1202

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 18/39 (46%), Positives = 20/39 (51%)
 Frame = +2

Query: 53  PCPRMNQXRDGSVFPD*RVDRYTTGWQGHRDFRARSPIY 169
           PC   NQ  DGS  P+  V+ YT GW  H    AR P Y
Sbjct: 340 PCAAFNQ--DGSSLPNLTVEHYT-GWACHTSKAAREPFY 375


>tr|B5WPX8|B5WPX8_9BURK Putative uncharacterized protein
           OS=Burkholderia sp. H160 GN=BH160DRAFT_5131 PE=4 SV=1
          Length = 384

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -1

Query: 372 LSQ*RIVTSCQGWFGGTGWGIQARRTAPLL 283
           LS+ R+V +C  WFG   WG+   RTAP++
Sbjct: 270 LSRARLVFACLLWFGVLLWGLGVTRTAPVM 299


>tr|A7PWP7|A7PWP7_VITVI Chromosome chr19 scaffold_35, whole genome
            shotgun sequence OS=Vitis vinifera GN=GSVIVT00025711001
            PE=4 SV=1
          Length = 911

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
 Frame = +1

Query: 193  CRELITPNLISNPLKSKLLYIPQC---------KPIPAQ*QGSSTPSLDAPPGAPEPP 339
            C +L +  L S+PL SKL  I +C          PIP+Q    + P L +PP  P PP
Sbjct: 837  CDKLASLELHSSPLLSKL-EIKECHKLTSLRLPSPIPSQLNIRACPRLFSPPSPPPPP 893


>tr|B8DL10|B8DL10_DESVM Glycosyl transferase family 2
           OS=Desulfovibrio vulgaris (strain Miyazaki) GN=DvMF_0756
           PE=4 SV=1
          Length = 242

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
 Frame = +3

Query: 162 LSMDDDLYKD----------LQRAYNPKLDLKPPEKQTVI--YTSMQANSCA--ITGEQY 299
           ++MD DL  D           +R Y+  +  +   K T      S  AN+    +TGE  
Sbjct: 95  VTMDADLQNDPADIPAMLIEFERGYDMVIGWRAKRKDTFAKRIASRWANAIRNRLTGETV 154

Query: 300 AEPGCPTRCPRTTLDRRSQFFTGI 371
            + GC  +  RTT+ RR   FTG+
Sbjct: 155 KDTGCSLKVLRTTMARRIPMFTGM 178