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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK952684
Clone id TST38A01NGRL0014_M07
Library
Length 588
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0014_M07. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GGCCGCACAACTTTGTACAAGAAAGTTGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTCTCAGCTTATGGGTATCCGAGAGTAGTCCCTCGTCCGTCGTCTTTCTCTCTTCGC
GTTCCATTCGTCGCCGCTCTGTGTATTTCACGTTTCGCGAATTTTATTGGAGTAGGAAGA
GTAGGGGAGCAAGCACGCCATGGCCTGCCCTCTTTCTACTCTCCTCTCCCCATTGTGCAG
CAGTGGAAACAGCAGCAGGCATGCGCGATTGTGCTTCTCCCAATCAACCTTTACATCTTC
TCAACGCAGGTATCATTTCGAACCTTTTCATAGCGACAGCGGAAGAAGCAGGTGCTGCTT
CCATGGTGGCGGGATGCTTGCAGTTCGGGCTAGCTTTGCAGAATTTGATAGTCACATAGA
GGCAACCTCAAAATTCATTTCCACAGGTCTGCCCCAGCTTGTTGAAAAAGCTGAGGGCCT
CCTTTACACCATTGCAGATGCTGCAGTTTCTACTGATGCCTCAGTGGCTGACACCGTGCA
GACAACGAATCGGGATTGGCTAAGTGGACTTACAGATGGACTTGAAGG
■■Homology search results ■■ -
sp_hit_id Q66AG7
Definition sp|Q66AG7|RNFD_YERPS Electron transport complex protein rnfD OS=Yersinia pseudotuberculosis
Align length 69
Score (bit) 30.8
E-value 4.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952684|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0014_M07, 5'
         (523 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q66AG7|RNFD_YERPS Electron transport complex protein rnfD OS=...    31   4.1  
sp|Q8ZED2|RNFD_YERPE Electron transport complex protein rnfD OS=...    31   4.1  
sp|A7FHZ5|RNFD_YERP3 Electron transport complex protein rnfD OS=...    31   4.1  
sp|A7HDG8|VATB_ANADF V-type ATP synthase beta chain OS=Anaeromyx...    30   5.3  
sp|P36165|TGL4_YEAST Lipase 4 OS=Saccharomyces cerevisiae GN=TGL...    30   5.3  
sp|Q9Z7D1|NTPA_CHLPN Nucleoside-triphosphatase OS=Chlamydia pneu...    30   7.0  
sp|Q63ZR6|UD3A1_XENLA UDP-glucuronosyltransferase 3A1 OS=Xenopus...    30   9.0  
sp|Q2IQ94|VATB_ANADE V-type ATP synthase beta chain OS=Anaeromyx...    30   9.1  

>sp|Q66AG7|RNFD_YERPS Electron transport complex protein rnfD
           OS=Yersinia pseudotuberculosis GN=rnfD PE=3 SV=1
          Length = 351

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 21/69 (30%), Positives = 30/69 (43%)
 Frame = +1

Query: 139 PALFLLSSPHCAAVETAAGMRDCASPNQPLHLLNAGIISNLFIATAEEAGAASMVAGCLQ 318
           P  FLL+   CAAV      +  ASP   LHL +   +   F    +   A++   G L 
Sbjct: 242 PVSFLLALGGCAAVSWMIAPQSFASP--MLHLFSGATMLGAFFIATDPVSASTTPRGRLI 299

Query: 319 FGLALQNLI 345
           FG  +  L+
Sbjct: 300 FGALIGILV 308


>sp|Q8ZED2|RNFD_YERPE Electron transport complex protein rnfD
           OS=Yersinia pestis GN=rnfD PE=3 SV=1
          Length = 351

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 21/69 (30%), Positives = 30/69 (43%)
 Frame = +1

Query: 139 PALFLLSSPHCAAVETAAGMRDCASPNQPLHLLNAGIISNLFIATAEEAGAASMVAGCLQ 318
           P  FLL+   CAAV      +  ASP   LHL +   +   F    +   A++   G L 
Sbjct: 242 PVSFLLALGGCAAVSWMIAPQSFASP--MLHLFSGATMLGAFFIATDPVSASTTPRGRLI 299

Query: 319 FGLALQNLI 345
           FG  +  L+
Sbjct: 300 FGALIGILV 308


>sp|A7FHZ5|RNFD_YERP3 Electron transport complex protein rnfD
           OS=Yersinia pseudotuberculosis serotype O:1b (strain IP
           31758) GN=rnfD PE=3 SV=1
          Length = 351

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 21/69 (30%), Positives = 30/69 (43%)
 Frame = +1

Query: 139 PALFLLSSPHCAAVETAAGMRDCASPNQPLHLLNAGIISNLFIATAEEAGAASMVAGCLQ 318
           P  FLL+   CAAV      +  ASP   LHL +   +   F    +   A++   G L 
Sbjct: 242 PVSFLLALGGCAAVSWMIAPQSFASP--MLHLFSGATMLGAFFIATDPVSASTTPRGRLI 299

Query: 319 FGLALQNLI 345
           FG  +  L+
Sbjct: 300 FGALIGILV 308


>sp|A7HDG8|VATB_ANADF V-type ATP synthase beta chain
           OS=Anaeromyxobacter sp. (strain Fw109-5) GN=atpB PE=3
           SV=1
          Length = 460

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 18/34 (52%), Positives = 20/34 (58%)
 Frame = -2

Query: 144 GRPWRACSPTLPTPIKFAKREIHRAATNGTRREK 43
           GRP    +  LP PI  A+  IH AA N TRREK
Sbjct: 97  GRP----TDGLPAPIAEARLPIHGAALNVTRREK 126


>sp|P36165|TGL4_YEAST Lipase 4 OS=Saccharomyces cerevisiae GN=TGL4
           PE=1 SV=1
          Length = 910

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 429 QWCKGGPQLFQQAGADLWK*ILRLPLCDYQILQ 331
           +WC  G +L    G   WK  L  PL DY++++
Sbjct: 160 EWCSAGARLDDLTGKTEWKQKLESPLYDYKLIK 192


>sp|Q9Z7D1|NTPA_CHLPN Nucleoside-triphosphatase OS=Chlamydia
           pneumoniae GN=CPn_0775 PE=3 SV=2
          Length = 206

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 22/64 (34%), Positives = 27/64 (42%)
 Frame = +2

Query: 50  LRVPFVAALCISRFANFIGVGRVGEQARHGLPSFYSPLPIVQQWKQQQACAIVLLPINLY 229
           LRVP +  L     ANF GVG   +  R  L    S L  +        C +VL+  N  
Sbjct: 73  LRVPALNGLPGPLSANFAGVGAYDKDHRKKLLDLMSSLESLVDRSAYFECCVVLVSPNQE 132

Query: 230 IFST 241
           IF T
Sbjct: 133 IFKT 136


>sp|Q63ZR6|UD3A1_XENLA UDP-glucuronosyltransferase 3A1 OS=Xenopus
           laevis GN=ugt3a1 PE=2 SV=1
          Length = 523

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +3

Query: 294 FHGGGMLAVRASFAEFDSHIEATSKFISTGLPQLVEKAEGLLYTI 428
           +HG  M+A+   F +FD+ +   +K + T +P+   KAE L   I
Sbjct: 380 YHGVPMVAIPLFFDQFDNAVRIKAKHLGTFIPKDQLKAEKLANAI 424


>sp|Q2IQ94|VATB_ANADE V-type ATP synthase beta chain
           OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=atpB
           PE=3 SV=1
          Length = 475

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 17/34 (50%), Positives = 20/34 (58%)
 Frame = -2

Query: 144 GRPWRACSPTLPTPIKFAKREIHRAATNGTRREK 43
           GRP    +  LP P+  A+  IH AA N TRREK
Sbjct: 103 GRP----ADGLPPPVPEARPAIHGAALNVTRREK 132
tr_hit_id Q92R50
Definition tr|Q92R50|Q92R50_RHIME Hypothetical transmembrane protein OS=Rhizobium meliloti
Align length 75
Score (bit) 38.1
E-value 0.27
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952684|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0014_M07, 5'
         (523 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q92R50|Q92R50_RHIME Hypothetical transmembrane protein OS=Rhi...    38   0.27 
tr|A6U7A5|A6U7A5_SINMW Putative uncharacterized protein OS=Sinor...    36   1.0  
tr|A0C1A9|A0C1A9_PARTE Chromosome undetermined scaffold_141, who...    35   2.9  
tr|A9T7T5|A9T7T5_PHYPA Predicted protein OS=Physcomitrella paten...    35   3.0  
tr|B8LKE4|B8LKE4_PICSI Putative uncharacterized protein OS=Picea...    33   6.5  
tr|B8LKB2|B8LKB2_PICSI Putative uncharacterized protein OS=Picea...    33   6.5  
tr|A0D5N3|A0D5N3_PARTE Chromosome undetermined scaffold_39, whol...    33   6.5  
tr|Q0DNE7|Q0DNE7_ORYSJ Os03g0757700 protein OS=Oryza sativa subs...    33   8.5  

>tr|Q92R50|Q92R50_RHIME Hypothetical transmembrane protein
           OS=Rhizobium meliloti GN=R01069 PE=4 SV=1
          Length = 214

 Score = 38.1 bits (87), Expect = 0.27
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
 Frame = +1

Query: 91  REFYWSRKSRGASTPWPALFLL---SSPHCAAVETAAGMRDCASPNQPLHLLNAGIISNL 261
           R F+W RK    +  + AL +L   SSPH  AV  AAG     +P   LH++ A ++++ 
Sbjct: 45  RAFFWPRKGLTRAPRYIALRILRLNSSPHSIAVGVAAGAASSLTPFFGLHIVLAVLLASA 104

Query: 262 FIATAEEAGAASMVA 306
           F      A   +++A
Sbjct: 105 FSGNLIAAAITTLLA 119


>tr|A6U7A5|A6U7A5_SINMW Putative uncharacterized protein
           OS=Sinorhizobium medicae (strain WSM419) GN=Smed_0679
           PE=4 SV=1
          Length = 210

 Score = 36.2 bits (82), Expect = 1.0
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
 Frame = +1

Query: 97  FYWSRKSRGASTPWPALFLL---SSPHCAAVETAAGMRDCASPNQPLHLLNAGIISNLFI 267
           F+W RK    +  + AL +L   SSPH  AV  AAG     +P   LH++ A ++++ F 
Sbjct: 43  FFWPRKGFTRAPRYIALRVLRLNSSPHAIAVGVAAGAASSLTPFFGLHIVLAVLLASAFS 102

Query: 268 ATAEEAGAASMVA 306
                A   +++A
Sbjct: 103 GNLVAAAITTVLA 115


>tr|A0C1A9|A0C1A9_PARTE Chromosome undetermined scaffold_141, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00034052001 PE=4 SV=1
          Length = 425

 Score = 34.7 bits (78), Expect = 2.9
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 440 CSICNGVKEALSFFNKLGQTCGNEF*G-CLYVTIKFCKASPNCKH 309
           CSIC  V     F+N +  TCG+ F G CL   I+  K+ P C+H
Sbjct: 21  CSICREV-----FYNPIRATCGHTFCGTCLVRWIQMKKSCPLCRH 60


>tr|A9T7T5|A9T7T5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_168544 PE=4 SV=1
          Length = 911

 Score = 34.7 bits (78), Expect = 3.0
 Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +2

Query: 17  PRVVPRPSSFSLRVPFVAALCISRFANFIGVGRVG--EQARHGLPSFYSPL 163
           P V+ +   FSL  PFV  +  SRF  F G+ R G  EQARH L   +S L
Sbjct: 308 PLVLIQVLPFSLHRPFVLPVNESRFVTFCGLYRPGHLEQARHKLSLAFSAL 358


>tr|B8LKE4|B8LKE4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 471

 Score = 33.5 bits (75), Expect = 6.5
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = +3

Query: 384 LPQLVEKAEGLLYTIXXXXXXXXXXXXXXXQTTNRDWLSGLTDGLE 521
           +P+LV +AEGLLYT+               Q TN  W   + DGLE
Sbjct: 65  IPRLVSRAEGLLYTL-ADAAVATSDSVAPAQKTNGSWFGFIADGLE 109


>tr|B8LKB2|B8LKB2_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 471

 Score = 33.5 bits (75), Expect = 6.5
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = +3

Query: 384 LPQLVEKAEGLLYTIXXXXXXXXXXXXXXXQTTNRDWLSGLTDGLE 521
           +P+LV +AEGLLYT+               Q TN  W   + DGLE
Sbjct: 65  IPRLVSRAEGLLYTL-ADAAVATSDSVAPAQKTNGSWFGFIADGLE 109


>tr|A0D5N3|A0D5N3_PARTE Chromosome undetermined scaffold_39, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00013780001 PE=4 SV=1
          Length = 211

 Score = 33.5 bits (75), Expect = 6.5
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 440 CSICNGVKEALSFFNKLGQTCGNEF*G-CLYVTIKFCKASPNCKH 309
           CSIC  V     F+N +  TCG+ F G CL   I+  K+ P C+H
Sbjct: 19  CSICREV-----FYNPIRATCGHTFCGTCLVRWIQQKKSCPLCRH 58


>tr|Q0DNE7|Q0DNE7_ORYSJ Os03g0757700 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0757700 PE=4 SV=1
          Length = 441

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 23/68 (33%), Positives = 34/68 (50%)
 Frame = -3

Query: 317 CKHPATMEAAPASSAVAMKRFEMIPALRRCKG*LGEAQSRMPAAVSTAAQWGEESRKRAG 138
           C+ PA+   APA+S+  +       ALRRC    G+++    +     + WGE     AG
Sbjct: 335 CRAPASSSLAPAASSAGV-------ALRRCAD-AGDSEVAARSLTRRGSGWGE-----AG 381

Query: 137 HGVLAPLL 114
            G L+PLL
Sbjct: 382 AGHLSPLL 389