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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK952665
Clone id TST38A01NGRL0014_L11
Library
Length 532
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0014_L11. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
CTCAGATGTGGGAATAAGCAAAAACTACAGAGGCACTTTTTTTTTGGATCTGTAGGATCA
TTACGGGTGTGCGGGAAGAATGAAAATGTTGCATTGGTGCCTATCTATCTGCGCAAAGAA
GGATATAGAACATGATGAAGGGTTGGAACTTGAAGAAAACCCTTTTGAATGGACAGGGAC
CTGAGGTTTGGTAGCTCACAGGCAACAAGTCCCATATAGTGAGCAGAAAGCTGGGGCCTG
CAACCATGAAGACCAGTAATGCATTTTGTATAAATTTCAAATTGTTATGGGGCTCTAAGT
GCTGACCCAGTCAATGGCAGATTCTGAGGCGACCATACCAATGCTACAAGTTGAGGAGCT
AGTTCTAGCAAGTACGTGGTGCAAAATATATGCTGGAGCTTCGTAGTGACAAATTGTTAT
GGGGCTCTAAGTGCTGACCCAGTCAATGGCAGATTCTGAGGCGACCATACCAATGCTACA
AGTTAAGGAACTAGTTCTACCAAGTACGTGGTGCAAAATATATGCTGGAGCT
■■Homology search results ■■ -
sp_hit_id A1JLC3
Definition sp|A1JLC3|MNTH_YERE8 Probable manganese transport protein mntH OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081)
Align length 63
Score (bit) 30.0
E-value 7.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952665|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0014_L11, 5'
         (532 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A1JLC3|MNTH_YERE8 Probable manganese transport protein mntH O...    30   7.2  
sp|P58022|LOXL2_MOUSE Lysyl oxidase homolog 2 OS=Mus musculus GN...    30   7.2  
sp|Q5E4Z6|MOBA_VIBF1 Probable molybdopterin-guanine dinucleotide...    30   9.4  
sp|P87060|POP1_SCHPO WD repeat-containing protein pop1 OS=Schizo...    30   9.5  

>sp|A1JLC3|MNTH_YERE8 Probable manganese transport protein mntH
           OS=Yersinia enterocolitica serotype O:8 / biotype 1B
           (strain 8081) GN=mntH PE=3 SV=1
          Length = 409

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = -3

Query: 239 RPQLSAHYMGLVACELPNLRSLSIQKGFLQVPTLHHVLY--PSLRR*IGTNATFSFFPHT 66
           RP+++A   G++  +LPN  ++ +  G L    + HV+Y   SL +  G N+    +  T
Sbjct: 176 RPEIAALGRGMLIPDLPNRDAVFLAAGVLGATIMPHVIYLHSSLTQTAGENSKADRYAST 235

Query: 65  RND 57
           + D
Sbjct: 236 KLD 238


>sp|P58022|LOXL2_MOUSE Lysyl oxidase homolog 2 OS=Mus musculus
           GN=Loxl2 PE=2 SV=2
          Length = 776

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
 Frame = +3

Query: 198 TGNKSHIVSRKLGPATMK--TSNAFCINFKLLWGSKC*PSQWQILRRP---YQCYKLRS* 362
           TG ++HI S KLGP+  +    NA C N +    S C PSQ      P    + YK    
Sbjct: 269 TGTEAHISSCKLGPSVTRDPVKNATCENGQPAVVS-CVPSQIFSPDGPSRFRKAYKPEQP 327

Query: 363 F*QVRGAKYMLELRSDKLL---WGSKC*PSQWQILRRPYQCYKL 485
             ++RG   + E R + L    WG+ C   +W ++     C +L
Sbjct: 328 LVRLRGGAQVGEGRVEVLKNGEWGTIC-DDKWDLVSASVVCREL 370


>sp|Q5E4Z6|MOBA_VIBF1 Probable molybdopterin-guanine dinucleotide
           biosynthesis protein A OS=Vibrio fischeri (strain ATCC
           700601 / ES114) GN=mobA PE=3 SV=1
          Length = 194

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 302 ALRAP*QFEIYTKCITGLHGCRPQLSAHYMGLVACELPNL 183
           A+  P QF  Y   + G+H     +++ ++G + C+ PNL
Sbjct: 65  AVTFPDQFSEYPGPLAGMHSGLVNMNSDWVGFIPCDSPNL 104


>sp|P87060|POP1_SCHPO WD repeat-containing protein pop1
           OS=Schizosaccharomyces pombe GN=pop1 PE=1 SV=1
          Length = 775

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = -1

Query: 304 QHLEPHNNL----KFIQNALLVFMVAGPSFLLTIWDLLPVSYQTSGPCPFKRVFFK 149
           Q L  H+NL     F QN +LV   A P   L +WDL   S +    CP   +FF+
Sbjct: 653 QTLHGHSNLVSQVTFNQN-ILVSASAPPDTSLRVWDLNTGSCRDILKCPLGHIFFQ 707
tr_hit_id Q5BRJ7
Definition tr|Q5BRJ7|Q5BRJ7_SCHJA SJCHGC08103 protein (Fragment) OS=Schistosoma japonicum
Align length 56
Score (bit) 33.1
E-value 9.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952665|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0014_L11, 5'
         (532 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5BRJ7|Q5BRJ7_SCHJA SJCHGC08103 protein (Fragment) OS=Schisto...    33   9.2  

>tr|Q5BRJ7|Q5BRJ7_SCHJA SJCHGC08103 protein (Fragment)
           OS=Schistosoma japonicum PE=2 SV=2
          Length = 110

 Score = 33.1 bits (74), Expect = 9.2
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = -2

Query: 468 MVASESAIDWVST*SPITICHYEAPAYILHHVLARTSSSTCSIGMVASESAIDWVS 301
           +VA+   ID +       +C YEA  ++L  +  R+S  T  +  V S+S  DWV+
Sbjct: 1   IVANFKGIDLLGLKVRAPLCSYEAGVFVLPMMSIRSSKGTGVVTSVPSDSPDDWVA 56