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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK952659
Clone id TST38A01NGRL0014_L05
Library
Length 645
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0014_L05. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
CGCTTCGCAACTCTCCATCTCTTGTTTACTCGACATAGCCATCCGGGGGCTGCCATAGCT
GCAGTTATTTGGTGATCGTCTTCCTCTTCTATTCGCAGAGAGTTTGCAGCATCCACGGAA
CCAACCTTGTAGAAATCCACAGGTCCTGTGTATATTTTGCGTCTTCAAAAAAGGGCAAGC
TCTTTGCAGCTAGAAGCACTCTCGGACAAATCACGACCCGCATGGGAGGCTGATGCATGT
GCATGAAGCAGTCCTTTCTCACTAAACTGCAGAGGCAACAGCCATACATGTCCATAGCCA
CCACTTTCCTGTCACCTTGATTTCATCCTACCACAGCACATTGGCTTAACGTCTTAACAC
CTTTGTGTCTGCAAGGGAGAAACCGAGCATAGACACCATGATTGCTCATCATGCCTTTGC
AGGAAATCCCATCATTTCAGACAAGCGTGGAAATCTTAGCATAGCTGATTTAAGCGAAGC
AGAATCAGCAGGTTCGTTGCGTGTATTGCCCTTGCTGGAGGGAAAGCCGTTAATATCCTC
AGTAGTGCTGCCTCAAGGTGGACAGATTTGGCGGCTTGCTTGGCAGAATTTTGGAGTTTG
TCACAATGCCTTGTTATCTTCACAACAAGCAGTGAATACTTTCTT
■■Homology search results ■■ -
sp_hit_id A4QM32
Definition sp|A4QM32|CEMA_PINKO Chloroplast envelope membrane protein OS=Pinus koraiensis
Align length 59
Score (bit) 34.7
E-value 0.41
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952659|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0014_L05, 5'
         (622 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A4QM32|CEMA_PINKO Chloroplast envelope membrane protein OS=Pi...    35   0.41 
sp|Q94A82|NUD19_ARATH Probable NADH pyrophosphatase NUDT19, chlo...    34   0.69 
sp|O88281|MEGF6_RAT Multiple epidermal growth factor-like domain...    32   2.6  
sp|O15014|ZN609_HUMAN Zinc finger protein 609 OS=Homo sapiens GN...    32   3.4  
sp|Q50098|PSTC_MYCLE Phosphate transport system permease protein...    31   4.5  
sp|Q80V70|MEGF6_MOUSE Multiple epidermal growth factor-like doma...    31   5.9  
sp|Q802R8|SMC6_FUGRU Structural maintenance of chromosomes prote...    30   7.7  

>sp|A4QM32|CEMA_PINKO Chloroplast envelope membrane protein OS=Pinus
           koraiensis GN=cemA PE=3 SV=2
          Length = 261

 Score = 34.7 bits (78), Expect = 0.41
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +2

Query: 434 ISDKRGNLSIADLSEAE--SAGSLRVLPLLEGKPLISSVVLPQGGQIWRLAWQNFGVCH 604
           ++ + G+L+I +L  AE  ++ SLR L  L G P +  + L +G + W   W N G  H
Sbjct: 19  LTSESGSLAIHELEVAEYKASASLRYLACLVGLPWVIPISLRKGLEPWVTNWWNTGKSH 77


>sp|Q94A82|NUD19_ARATH Probable NADH pyrophosphatase NUDT19,
           chloroplastic OS=Arabidopsis thaliana GN=NUDT19 PE=2
           SV=1
          Length = 438

 Score = 33.9 bits (76), Expect = 0.69
 Identities = 37/133 (27%), Positives = 53/133 (39%), Gaps = 20/133 (15%)
 Frame = +2

Query: 281 AIHVHSHHFPVTLISSYHSTLA*RLNTFVSAREKPSIDTMIAHHAFAGNPIIS-DKRGNL 457
           A+ + S  +P     S   TL     T +SA    ++   +  HAFAGNP+ S   +   
Sbjct: 3   ALFLSSSSYPTLSFLSRSVTLNLARTTTLSAL---TMSMNLKTHAFAGNPLKSKTPKSTD 59

Query: 458 SIADLSEAESAGSL--------------RVLPLLEGKPLISSVVLPQGGQ-----IWRLA 580
             +  S  ES  +L              +VLP  +G+PL+ S     GG      IW L 
Sbjct: 60  PFSPTSAFESLKTLIPVIPNHSTPSPDFKVLPFSKGRPLVFS----SGGDANTTPIWHLG 115

Query: 581 WQNFGVCHNALLS 619
           W +   C   L S
Sbjct: 116 WVSLADCKVLLAS 128


>sp|O88281|MEGF6_RAT Multiple epidermal growth factor-like domains 6
            OS=Rattus norvegicus GN=Megf6 PE=2 SV=1
          Length = 1574

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 24/77 (31%), Positives = 29/77 (37%), Gaps = 6/77 (7%)
 Frame = +1

Query: 223  WEADACA*SS--PFSLNCRGNSHTCP*PP----LSCHLDFILPQHIGLTS*HLCVCKGET 384
            W  +ACA     P + +C   +  C  PP    LSC      P   G    HLC C GET
Sbjct: 1170 WFGEACAQRCLCPTNASCHHVTGECRCPPGFTGLSCE-QACQPGTFGKDCEHLCQCPGET 1228

Query: 385  EHRHHDCSSCLCRKSHH 435
                     C C   +H
Sbjct: 1229 WACDPASGVCTCAAGYH 1245


>sp|O15014|ZN609_HUMAN Zinc finger protein 609 OS=Homo sapiens
           GN=ZNF609 PE=1 SV=2
          Length = 1411

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 582 QASRQICPP*GSTTEDINGFPSSKGNTRNEPADSASLKSA 463
           Q S +  PP  ST+ED+   PSS    +N+P     L S+
Sbjct: 414 QNSSEHRPPASSTSEDVKASPSSANKRKNKPLSDMELNSS 453


>sp|Q50098|PSTC_MYCLE Phosphate transport system permease protein
           pstC OS=Mycobacterium leprae GN=pstC PE=3 SV=1
          Length = 319

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = -3

Query: 617 ITRHCDKLQNSAKQAAKSVHLEAALL----RILTAFPPARAIHA 498
           +TR CD+L  SA  AA S  + A LL     +L A P  RA HA
Sbjct: 13  VTRRCDRLFKSAAAAAGSTVVAAILLIAIFLLLRAVPSLRANHA 56


>sp|Q80V70|MEGF6_MOUSE Multiple epidermal growth factor-like domains 6
            OS=Mus musculus GN=Megf6 PE=2 SV=3
          Length = 1572

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 25/93 (26%), Positives = 29/93 (31%), Gaps = 20/93 (21%)
 Frame = +1

Query: 217  PAWEADACA*SSP---FSLNCRGNSHTCP*PPLSCHL-----------------DFILPQ 336
            P W    C  + P   F   C    H CP P  SCH                      P 
Sbjct: 1153 PGWRGSHCEQACPRGWFGEACAQRCH-CP-PGASCHHVSGECHCPPGFTGPGCEQACQPG 1210

Query: 337  HIGLTS*HLCVCKGETEHRHHDCSSCLCRKSHH 435
              G    H C C GET   H    +C+C   +H
Sbjct: 1211 TFGKDCEHPCQCPGETWACHPASGACVCAAGYH 1243


>sp|Q802R8|SMC6_FUGRU Structural maintenance of chromosomes protein 6
            OS=Fugu rubripes GN=smc6 PE=2 SV=1
          Length = 1090

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +2

Query: 353  LNTFVSAREKPSIDTMIAHHAFAGNPIISDKRGNLSIA 466
            L  F+SAR K   D+M+A   F GN     K   LSI+
Sbjct: 938  LRRFLSARCKYYFDSMLAQRGFTGNMTFDHKNETLSIS 975
tr_hit_id A9NVE2
Definition tr|A9NVE2|A9NVE2_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 96
Score (bit) 47.4
E-value 0.0007
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952659|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0014_L05, 5'
         (622 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NVE2|A9NVE2_PICSI Putative uncharacterized protein OS=Picea...    47   7e-04
tr|Q8A167|Q8A167_BACTN Sensor protein OS=Bacteroides thetaiotaom...    37   1.2  
tr|A2TTE8|A2TTE8_9FLAO Putative uncharacterized protein OS=Dokdo...    36   2.1  
tr|Q0WVK5|Q0WVK5_ARATH Putative uncharacterized protein At5g2007...    34   8.0  
tr|Q0WV54|Q0WV54_ARATH Putative uncharacterized protein At5g2007...    34   8.0  
tr|A7PF04|A7PF04_VITVI Chromosome chr11 scaffold_13, whole genom...    34   8.0  

>tr|A9NVE2|A9NVE2_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 403

 Score = 47.4 bits (111), Expect = 7e-04
 Identities = 29/96 (30%), Positives = 37/96 (38%), Gaps = 24/96 (25%)
 Frame = +2

Query: 407 HHAFAGNPIISDKRG---------------------NLSIADLSEAESAGSLRVLPLLEG 523
           HH FAGNP+I                          NL      E  + G +R+LP  +G
Sbjct: 10  HHTFAGNPLIGAAAASSDSVSPDSSDGVESAVASLRNLLTDTAEEEATGGGIRILPFRQG 69

Query: 524 KPLISSVVLPQG---GQIWRLAWQNFGVCHNALLSS 622
           KPL+ S +       G  WRLAWQ    C     +S
Sbjct: 70  KPLVESSIAAANSDVGPTWRLAWQTVHKCRGLFEAS 105


>tr|Q8A167|Q8A167_BACTN Sensor protein OS=Bacteroides
           thetaiotaomicron GN=BT_3800 PE=4 SV=1
          Length = 1333

 Score = 36.6 bits (83), Expect = 1.2
 Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
 Frame = +2

Query: 359 TFVSAREKPSIDTMIAHHAFAGNPI-ISDKRGNLSIADLSEAESAGSLRVLPLLEGKPLI 535
           TF    EK  + + + +H  AG+ I ++  RGNL    L   ++ G+ + +PL +GK L 
Sbjct: 135 TFQLLEEKGEVFSSLCYHEKAGSGIWLTTNRGNLI---LFHPDTPGAYQKIPLTDGKTLQ 191

Query: 536 SSVVLPQGGQIW 571
            + +L + G +W
Sbjct: 192 VTSILNRDGVVW 203


>tr|A2TTE8|A2TTE8_9FLAO Putative uncharacterized protein OS=Dokdonia
           donghaensis MED134 GN=MED134_02680 PE=4 SV=1
          Length = 281

 Score = 35.8 bits (81), Expect = 2.1
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +2

Query: 272 EATAIHVHSHHFPVTLISSYHSTLA*RLNTFVSAREKPSIDTMIAHHAF 418
           E TA+ +  H  PV L S YHS     +    S +E+  I   IAHH++
Sbjct: 39  EPTALQILGHQTPVRLASLYHSLKVQAIEELESLKEEILIKNEIAHHSY 87


>tr|Q0WVK5|Q0WVK5_ARATH Putative uncharacterized protein At5g20070
           (Fragment) OS=Arabidopsis thaliana GN=At5g20070 PE=2
           SV=1
          Length = 291

 Score = 33.9 bits (76), Expect = 8.0
 Identities = 37/133 (27%), Positives = 53/133 (39%), Gaps = 20/133 (15%)
 Frame = +2

Query: 281 AIHVHSHHFPVTLISSYHSTLA*RLNTFVSAREKPSIDTMIAHHAFAGNPIIS-DKRGNL 457
           A+ + S  +P     S   TL     T +SA    ++   +  HAFAGNP+ S   +   
Sbjct: 3   ALFLSSSSYPTLSFLSRSVTLNLARTTTLSAL---TMSMNLKTHAFAGNPLKSKTPKSTD 59

Query: 458 SIADLSEAESAGSL--------------RVLPLLEGKPLISSVVLPQGGQ-----IWRLA 580
             +  S  ES  +L              +VLP  +G+PL+ S     GG      IW L 
Sbjct: 60  PFSPTSAFESLKTLIPVIPNHSTPSPDFKVLPFSKGRPLVFS----SGGDANTTPIWHLG 115

Query: 581 WQNFGVCHNALLS 619
           W +   C   L S
Sbjct: 116 WVSLADCKVMLAS 128


>tr|Q0WV54|Q0WV54_ARATH Putative uncharacterized protein At5g20070
           OS=Arabidopsis thaliana GN=At5g20070 PE=2 SV=1
          Length = 438

 Score = 33.9 bits (76), Expect = 8.0
 Identities = 37/133 (27%), Positives = 53/133 (39%), Gaps = 20/133 (15%)
 Frame = +2

Query: 281 AIHVHSHHFPVTLISSYHSTLA*RLNTFVSAREKPSIDTMIAHHAFAGNPIIS-DKRGNL 457
           A+ + S  +P     S   TL     T +SA    ++   +  HAFAGNP+ S   +   
Sbjct: 3   ALFLSSSSYPTLSFLSRSVTLNLARTTTLSAL---TMSMNLKTHAFAGNPLKSKTPKSTD 59

Query: 458 SIADLSEAESAGSL--------------RVLPLLEGKPLISSVVLPQGGQ-----IWRLA 580
             +  S  ES  +L              +VLP  +G+PL+ S     GG      IW L 
Sbjct: 60  PFSPTSAFESLKTLIPVIPNHSTPSPDFKVLPFSKGRPLVFS----SGGDANTTPIWHLG 115

Query: 581 WQNFGVCHNALLS 619
           W +   C   L S
Sbjct: 116 WVSLADCKVLLAS 128


>tr|A7PF04|A7PF04_VITVI Chromosome chr11 scaffold_13, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016858001
           PE=4 SV=1
          Length = 405

 Score = 33.9 bits (76), Expect = 8.0
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 15/84 (17%)
 Frame = +2

Query: 389 IDTMIAHHAFAGNPIISDKRGNLSI-ADLSEAESAGS-------------LRVLPLLEGK 526
           + T +  HAFAGNP+ S      S+ + +S  E+  S              +VLP  +G+
Sbjct: 1   MSTNLKTHAFAGNPLRSTTPKPESLFSPISAFETLKSRLLENALLPSSPIFKVLPFRKGR 60

Query: 527 PL-ISSVVLPQGGQIWRLAWQNFG 595
           PL IS+        IW L W N G
Sbjct: 61  PLAISTRPTGDSPPIWHLGWFNLG 84