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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK952476
Clone id TST38A01NGRL0014_D02
Library
Length 549
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0014_D02. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GAAGCATTGAATAAAAGGTGGGCAAATCCTTTGCCTATGGTCCGTGTGGTGGGAAAATCC
TTTGTCTCTCCTGCGGTTGGCATTGGCACCCTTTGCATCATCTATTAGGACGTGCATCCT
CTATCTTGCCTTTGTTGCTAGCAATGGTCCAAGGCTTCCCATCTACAACCACCTTGCCCG
TTGTGGACACCACTTGTTGGTCATGCATGCCTCCATTGTGTCCACAGCCTGTTTCCATAC
TTGATGGCTTTCCTCAATGCTAGATTACATCAGCATATTGCCACCCATACATGCCACTCT
CATTCCACACAACTAATTGGCGTGCCCTTCATTACCACATCATATCTGATTGCCCCTTGC
TCCCAATAATAGTGCCACCACTTGCCTGCTAGATGCAAGTGGTAAAGATGAGGGATGACT
ACACTTTGAAGCATATGTGACTTAGTATTGTGCTCAATACCTAGATAGGAGCACTTGTGT
AAAAAGACTTATGTATAAGATACGTATCATGATTTATTCCCAAAAAAAAAAAAAAAAAAA
AAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9Y6R7
Definition sp|Q9Y6R7|FCGBP_HUMAN IgGFc-binding protein OS=Homo sapiens
Align length 71
Score (bit) 30.8
E-value 4.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952476|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0014_D02, 5'
         (521 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Y6R7|FCGBP_HUMAN IgGFc-binding protein OS=Homo sapiens GN=F...    31   4.0  
sp|P0C0L5|CO4B_HUMAN Complement C4-B OS=Homo sapiens GN=C4B PE=1...    30   5.3  
sp|P0C0L4|CO4A_HUMAN Complement C4-A OS=Homo sapiens GN=C4A PE=1...    30   5.3  
sp|O65731|RS5_CICAR 40S ribosomal protein S5 (Fragment) OS=Cicer...    30   6.9  
sp|Q8TFG3|YL55_SCHPO Putative uncharacterized membrane protein P...    30   9.0  
sp|A6X2G7|BETA_OCHA4 Choline dehydrogenase OS=Ochrobactrum anthr...    30   9.0  

>sp|Q9Y6R7|FCGBP_HUMAN IgGFc-binding protein OS=Homo sapiens GN=FCGBP
            PE=1 SV=3
          Length = 5405

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 22/71 (30%), Positives = 27/71 (38%), Gaps = 15/71 (21%)
 Frame = -2

Query: 235  ETGCGHNGGMHD-----------QQVVSTTGKVVV----DGKPWTIASNKGKIEDARPNR 101
            + GC HNG  ++           QQ     GKVVV      KP  +    G I       
Sbjct: 2785 QCGCYHNGAYYEPEQTVLIDNCRQQCTCHVGKVVVCQEHSCKPGQVCQPSGGILSCVNKD 2844

Query: 100  *CKGCQCQPQE 68
             C G  C+PQE
Sbjct: 2845 PCHGVTCRPQE 2855



 Score = 30.0 bits (66), Expect = 6.9
 Identities = 22/71 (30%), Positives = 27/71 (38%), Gaps = 15/71 (21%)
 Frame = -2

Query: 235  ETGCGHNGGMHD-----------QQVVSTTGKVVV----DGKPWTIASNKGKIEDARPNR 101
            + GC HNG  ++           QQ     GKVVV      KP  +    G I       
Sbjct: 3986 QCGCYHNGVYYEPEQTVLIDNCRQQCTCHVGKVVVCQEHSCKPGQVCQPSGGILSCVTKD 4045

Query: 100  *CKGCQCQPQE 68
             C G  C+PQE
Sbjct: 4046 PCHGVTCRPQE 4056


>sp|P0C0L5|CO4B_HUMAN Complement C4-B OS=Homo sapiens GN=C4B PE=1
           SV=1
          Length = 1744

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 244 SSMETGCGHNGGMHDQQVVSTTGKVVVDGKPWTIASNK 131
           +S + GCG  GG    QV    G    DG  WT++  +
Sbjct: 629 NSYDLGCGPGGGDSALQVFQAAGLAFSDGDQWTLSRKR 666


>sp|P0C0L4|CO4A_HUMAN Complement C4-A OS=Homo sapiens GN=C4A PE=1
           SV=1
          Length = 1744

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 244 SSMETGCGHNGGMHDQQVVSTTGKVVVDGKPWTIASNK 131
           +S + GCG  GG    QV    G    DG  WT++  +
Sbjct: 629 NSYDLGCGPGGGDSALQVFQAAGLAFSDGDQWTLSRKR 666


>sp|O65731|RS5_CICAR 40S ribosomal protein S5 (Fragment) OS=Cicer
           arietinum GN=RPS5 PE=2 SV=1
          Length = 197

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 254 SMLDYISILPPIHATLIPH 310
           S++DYI ++P  HAT +PH
Sbjct: 26  SLIDYIGVVPSKHATYVPH 44


>sp|Q8TFG3|YL55_SCHPO Putative uncharacterized membrane protein
           PB18E9.05c OS=Schizosaccharomyces pombe GN=SPAPB18E9.05c
           PE=2 SV=1
          Length = 90

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +1

Query: 166 QPPCPLWTPLVGHACLHCVHSLFPYLMAFLNARLHQHIATHTCHSHSTQLIGVPFITTSY 345
           QPPC ++ PL+    L  V  L P L+ +L       + + +    ST   GV    + +
Sbjct: 7   QPPCNIFRPLILSMHLSPVSILSPVLLIYLVIHSQNELVSMSWLFRSTICFGVSLFLSFF 66

Query: 346 LI 351
           L+
Sbjct: 67  LV 68


>sp|A6X2G7|BETA_OCHA4 Choline dehydrogenase OS=Ochrobactrum anthropi
           (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=betA PE=3
           SV=1
          Length = 549

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 325 ARQLVVWNESGMYGWQYADVI 263
           AR    W+ESG  GW YADV+
Sbjct: 99  ARDYDHWSESGARGWAYADVL 119
tr_hit_id A5BCT0
Definition tr|A5BCT0|A5BCT0_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 79
Score (bit) 34.7
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952476|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0014_D02, 5'
         (521 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5BCT0|A5BCT0_VITVI Putative uncharacterized protein OS=Vitis...    35   2.9  
tr|B7PU67|B7PU67_IXOSC Putative uncharacterized protein OS=Ixode...    33   6.5  
tr|A0ZDR9|A0ZDR9_NODSP Glycosyl transferase, group 1 OS=Nodulari...    33   8.5  

>tr|A5BCT0|A5BCT0_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_003760 PE=4 SV=1
          Length = 205

 Score = 34.7 bits (78), Expect = 2.9
 Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 16/79 (20%)
 Frame = +1

Query: 121 LSCLCC*QWSKASHLQPPCPLWT-PLV--------------GHACLHCVH-SLFPYLMAF 252
           L CLCC +++    L P   L+T PL               GHA LH  H +L P    F
Sbjct: 71  LYCLCCFEYAL---LYPASSLFTYPLNPSLTTFAWPRMATHGHAWLHLAHPTLMPISCPF 127

Query: 253 LNARLHQHIATHTCHSHST 309
           L   +H H+    C  H T
Sbjct: 128 LXIHIHTHVNEAPCKXHET 146


>tr|B7PU67|B7PU67_IXOSC Putative uncharacterized protein OS=Ixodes
           scapularis GN=IscW_ISCW019345 PE=4 SV=1
          Length = 324

 Score = 33.5 bits (75), Expect = 6.5
 Identities = 19/47 (40%), Positives = 27/47 (57%)
 Frame = +2

Query: 44  VWWENPLSLLRLALAPFASSIRTCILYLAFVASNGPRLPIYNHLARC 184
           +W+  P+  L   L  FA+ I   ++Y  F   NG RLP+YN +ARC
Sbjct: 280 LWYRLPI--LVGVLTSFATGIVFMLVYYRFFHPNG-RLPLYNPIARC 323


>tr|A0ZDR9|A0ZDR9_NODSP Glycosyl transferase, group 1 OS=Nodularia
           spumigena CCY 9414 GN=N9414_16142 PE=4 SV=1
          Length = 439

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 21/71 (29%), Positives = 33/71 (46%)
 Frame = +3

Query: 216 LCPQPVSILDGFPQC*ITSAYCHPYMPLSFHTTNWRALHYHIISDCPLLPIIVPPLAC*M 395
           +C +P+  LD        SAY +P  PL ++ +    LH+   SD  LL    P +    
Sbjct: 55  VCSRPMLGLDELKSFPKFSAYAYPTKPLFYYKSAPEPLHHKHWSDTKLLENFQPDVVLVE 114

Query: 396 QVVKMRDDYTL 428
           +  +MR  Y+L
Sbjct: 115 EATQMRGFYSL 125