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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK952472
Clone id TST38A01NGRL0014_C22
Library
Length 586
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0014_C22. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CGGCTCTACTTGCGTCAAGAAAACCAGCTTTTTTACAGGAAGAAGAGAGGTCCCGGAATG
AGTACAAACGTGGGGTGAGCTGTTGGAGTTTCGATGTTGAGAGTCTGAAAGATCAAGCTG
CTGCAATCCATGATGAGGAAGAGATCTCAAGTACAGACAAAGGGCTTGCTGTTTTGTCCC
CTTGTGGAGAAGAGGCTAGACAGTCACTGACTTTGGATACACACCAGTTTAGGAGATCAT
ATGACAGAGAACCAAAGCAATTCGGAAGATTTGGTGTCTTTGATGGAGATTTGGAGTTGG
AAAGTCCAGGATGGCATGTTGTGAGACCAATAAGAACTTCTGAGGATGCTCAAAAGCTCC
CTACAATAGTGGAGGACAAAGGAAGGAATGGCTCAAGTGAGAGAGGTCTGGAAAACTTAG
ATTCATCCAACAGCAGCCGCCTCATGGATGTCCTTCCTAATGGAAAAAGTTCTGTAAGGC
ATGATGATGACAGTAAAGGATAAGCAAGCGAAGAGACTGGACAGCAGTGTAAAGAAAATG
GGAACTCAGTTGATGTCTGTAAAGAAAATGGGAACTCGACTACTGT
■■Homology search results ■■ -
sp_hit_id Q9Y247
Definition sp|Q9Y247|FA50B_HUMAN Protein FAM50B OS=Homo sapiens
Align length 30
Score (bit) 32.7
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952472|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0014_C22, 5'
         (586 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Y247|FA50B_HUMAN Protein FAM50B OS=Homo sapiens GN=FAM50B P...    33   1.4  
sp|Q293F6|SSRP1_DROPS FACT complex subunit Ssrp1 OS=Drosophila p...    32   1.8  
sp|Q7UZG1|RS6_PROMP 30S ribosomal protein S6 OS=Prochlorococcus ...    32   2.3  
sp|A9BIJ7|SYV_PETMO Valyl-tRNA synthetase OS=Petrotoga mobilis (...    26   3.2  
sp|P32569|MED17_YEAST Mediator of RNA polymerase II transcriptio...    30   6.7  
sp|Q4R846|FA50B_MACFA Protein FAM50B OS=Macaca fascicularis GN=F...    30   6.7  
sp|P97399|DSPP_MOUSE Dentin sialophosphoprotein OS=Mus musculus ...    30   6.7  
sp|Q24702|DVA1_DICVI DVA-1 polyprotein OS=Dictyocaulus viviparus...    30   8.9  

>sp|Q9Y247|FA50B_HUMAN Protein FAM50B OS=Homo sapiens GN=FAM50B PE=2
           SV=1
          Length = 325

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +3

Query: 36  QEEERSRNEYKRGVSCWSFDVESLKDQAAA 125
           Q E+  R E KR +SC SF ++ L DQA A
Sbjct: 104 QREQEQRRERKRKISCLSFALDDLDDQADA 133


>sp|Q293F6|SSRP1_DROPS FACT complex subunit Ssrp1 OS=Drosophila
           pseudoobscura pseudoobscura GN=Ssrp PE=3 SV=2
          Length = 727

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 10/106 (9%)
 Frame = +3

Query: 279 FDGDLELESPGWHVVRPIRTSEDAQKLPTIVEDK------GRNGSSERGLENLDSSNSSR 440
           FD ++ L++   H+   I   E A+    I + K      G++ S  + ++  DS N + 
Sbjct: 389 FDFEVTLKNGTVHIFSSIEKEEYAKLFDFITQKKLHVSNMGKDKSGYKDVDFGDSDNENE 448

Query: 441 LMDVLPNGKSSVRH----DDDSKG*ASEETGQQCKENGNSVDVCKE 566
               L   K+  R     DDD      E T +  K N N  DV +E
Sbjct: 449 PDAYLARLKAEAREKEEEDDDGDDSDEESTDEDFKPNENESDVAEE 494


>sp|Q7UZG1|RS6_PROMP 30S ribosomal protein S6 OS=Prochlorococcus
           marinus subsp. pastoris (strain CCMP1378 / MED4) GN=rpsF
           PE=3 SV=1
          Length = 154

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
 Frame = +3

Query: 291 LELESPGWHVVR---PIRTSEDAQKLPTIVED----------KGRNGSSERGLENLDSSN 431
           L  +  G H+ +    +R SED  +  T+ ++          KG N S ++ +E++DS+N
Sbjct: 66  LSHQGDGQHIFKIEKAMRLSEDVIRYLTVKQEGPLPTPRSSNKGYNQSEKKDIESIDSTN 125

Query: 432 SSRLMDVLPNGKSSVRHDDDSKG*ASEET 518
            S   +   + K++      S+G  S+++
Sbjct: 126 KSEFKEEANDKKTATSESTSSQGKESQKS 154


>sp|A9BIJ7|SYV_PETMO Valyl-tRNA synthetase OS=Petrotoga mobilis
           (strain DSM 10674 / SJ95) GN=valS PE=3 SV=1
          Length = 874

 Score = 26.2 bits (56), Expect(2) = 3.2
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
 Frame = -3

Query: 347 ILRSSYWSHNMPSWTFQ----LQISIKDTKSSE 261
           I R  +W H +P W  Q    + +S++D K  E
Sbjct: 401 ISRQLWWGHRIPVWYCQNCGHVNVSVEDVKKCE 433



 Score = 22.7 bits (47), Expect(2) = 3.2
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -1

Query: 529 HCCPVSSLAYPLLSSSCLTELFPLGRTSMRRLLLDESKF 413
           HC    ++  PLL      ++ PL   +++ +  DE KF
Sbjct: 342 HCYRCDTVIEPLLLDQWFVKMKPLAEKAIQVVENDEIKF 380


>sp|P32569|MED17_YEAST Mediator of RNA polymerase II transcription
           subunit 17 OS=Saccharomyces cerevisiae GN=SRB4 PE=1 SV=1
          Length = 687

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = +3

Query: 318 VVRPIRTSEDAQKLPTI---VEDKGRNGSSERGLENLDSSNSSRLMDVLPNGKSSVRHDD 488
           V+  IR     QKL  I    ED G     +RG+ N+ ++  S+ +D++P+  S  +  D
Sbjct: 321 VIFKIRDRTSGQKLLAIKYGYEDSGSTYKHDRGIANIRNNIESQNLDLIPHSSSVFKGTD 380


>sp|Q4R846|FA50B_MACFA Protein FAM50B OS=Macaca fascicularis
           GN=FAM50B PE=2 SV=1
          Length = 325

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 42  EERSRNEYKRGVSCWSFDVESLKDQAAA 125
           E+  R E KR +SC SF ++ L DQA A
Sbjct: 106 EQEHRRERKRKISCLSFALDDLDDQADA 133


>sp|P97399|DSPP_MOUSE Dentin sialophosphoprotein OS=Mus musculus
            GN=Dspp PE=1 SV=2
          Length = 934

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +3

Query: 375  DKGRNGSSERGLENLDSSNSSRLMDVLPNGKSSVRHDDDSKG*ASEET-GQQCKENGNSV 551
            D   +  S    ++ DSS+SS   D   +  SS   D DSK  +S+ + G     NGNS 
Sbjct: 850  DSSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSDSKDSSSDSSDGDSKSGNGNSD 909

Query: 552  DVCKENGNS 578
                 N +S
Sbjct: 910  SNSDSNSDS 918


>sp|Q24702|DVA1_DICVI DVA-1 polyprotein OS=Dictyocaulus viviparus
           GN=DVA-1 PE=1 SV=1
          Length = 1557

 Score = 30.0 bits (66), Expect = 8.9
 Identities = 26/113 (23%), Positives = 56/113 (49%), Gaps = 2/113 (1%)
 Frame = +1

Query: 223 TSLGDHMTENQSNSEDLVSLMEIWSWKVQDGML*DQ*ELLRMLKSSLQ*WRTKEGMAQVR 402
           T L + +TE+Q ++ + V  + +  W+VQ+     +  L   + + L  W T E   +V+
Sbjct: 513 TELENRLTEDQKHTIEHVREVCLGLWEVQNTNKQHKQSLEEAMDAYLS-WMTDEDKEKVK 571

Query: 403 EVWKT*IHPTAAASWMSFLME--KVL*GMMMTVKDKQAKRLDSSVKKMGTQLM 555
            +++T       ++  +F  E  K++      VK K  ++L+++ K  GT ++
Sbjct: 572 AIYET-------SNRQTFYDEILKIMESSEDEVKAKATEKLEAACKHYGTNIL 617
tr_hit_id A7QJ71
Definition tr|A7QJ71|A7QJ71_VITVI Chromosome chr2 scaffold_105, whole genome shotgun sequence OS=Vitis vinifera
Align length 48
Score (bit) 52.8
E-value 1.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952472|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0014_C22, 5'
         (586 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7QJ71|A7QJ71_VITVI Chromosome chr2 scaffold_105, whole genom...    53   1e-05
tr|A5BLX5|A5BLX5_VITVI Putative uncharacterized protein OS=Vitis...    53   1e-05
tr|B4FBG9|B4FBG9_MAIZE Putative uncharacterized protein OS=Zea m...    52   3e-05
tr|Q10SQ6|Q10SQ6_ORYSJ Os03g0114300 protein OS=Oryza sativa subs...    51   5e-05
tr|B8ALY6|B8ALY6_ORYSI Putative uncharacterized protein OS=Oryza...    51   5e-05
tr|A7PM90|A7PM90_VITVI Chromosome chr14 scaffold_21, whole genom...    50   7e-05
tr|Q9SU46|Q9SU46_ARATH Putative uncharacterized protein AT4g2410...    50   9e-05
tr|Q8W2Y7|Q8W2Y7_ORYSA Putative Ste-20 related kinase, 3'-partia...    50   1e-04
tr|Q8RWU9|Q8RWU9_ARATH Putative uncharacterized protein At4g2410...    50   1e-04
tr|Q337B2|Q337B2_ORYSJ Os10g0518800 protein OS=Oryza sativa subs...    50   1e-04
tr|Q109E3|Q109E3_ORYSJ Protein kinase domain containing protein,...    50   1e-04
tr|B8BHW3|B8BHW3_ORYSI Putative uncharacterized protein OS=Oryza...    50   1e-04
tr|A9TGS0|A9TGS0_PHYPA Predicted protein OS=Physcomitrella paten...    49   2e-04
tr|A7PVH3|A7PVH3_VITVI Chromosome chr9 scaffold_33, whole genome...    49   2e-04
tr|A3A3S1|A3A3S1_ORYSJ Putative uncharacterized protein OS=Oryza...    48   4e-04
tr|A2X1L1|A2X1L1_ORYSI Putative uncharacterized protein OS=Oryza...    48   4e-04
tr|Q7X9J3|Q7X9J3_WHEAT Ste20-related protein (Fragment) OS=Triti...    48   5e-04
tr|Q6K9M3|Q6K9M3_ORYSJ Putative MAP4K alpha1 OS=Oryza sativa sub...    48   5e-04
tr|Q0DWW4|Q0DWW4_ORYSJ Os02g0791700 protein OS=Oryza sativa subs...    48   5e-04
tr|B8AE28|B8AE28_ORYSI Putative uncharacterized protein OS=Oryza...    48   5e-04
tr|A3AC63|A3AC63_ORYSJ Putative uncharacterized protein OS=Oryza...    48   5e-04
tr|Q6ETL7|Q6ETL7_ORYSJ Putative oxidative-stress responsive 1 OS...    47   8e-04
tr|B4FQP2|B4FQP2_MAIZE Putative uncharacterized protein OS=Zea m...    46   0.001
tr|B6U6J4|B6U6J4_MAIZE ATP binding protein OS=Zea mays PE=2 SV=1       46   0.002
tr|A7L4B0|A7L4B0_CARPA Protein kinase OS=Carica papaya PE=4 SV=1       45   0.004
tr|B6U2B2|B6U2B2_MAIZE STE20/SPS1-related proline-alanine-rich p...    44   0.009
tr|O82489|O82489_ARATH T12H20.4 protein OS=Arabidopsis thaliana ...    42   0.019
tr|A9S0F3|A9S0F3_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.019
tr|A9RK00|A9RK00_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.019
tr|A5C5G7|A5C5G7_VITVI Putative uncharacterized protein OS=Vitis...    42   0.019

>tr|A7QJ71|A7QJ71_VITVI Chromosome chr2 scaffold_105, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00000530001
           PE=4 SV=1
          Length = 637

 Score = 52.8 bits (125), Expect = 1e-05
 Identities = 24/48 (50%), Positives = 35/48 (72%)
 Frame = +3

Query: 3   ALLASRKPAFLQEEERSRNEYKRGVSCWSFDVESLKDQAAAIHDEEEI 146
           A LA +K    ++E  S++EYKRGVS W+FD+E LK QA+ + D++EI
Sbjct: 220 AQLALKKMPSAEQEAISQSEYKRGVSAWNFDIEDLKVQASLVQDDDEI 267


>tr|A5BLX5|A5BLX5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_039089 PE=4 SV=1
          Length = 1077

 Score = 52.8 bits (125), Expect = 1e-05
 Identities = 24/48 (50%), Positives = 35/48 (72%)
 Frame = +3

Query: 3   ALLASRKPAFLQEEERSRNEYKRGVSCWSFDVESLKDQAAAIHDEEEI 146
           A LA +K    ++E  S++EYKRGVS W+FD+E LK QA+ + D++EI
Sbjct: 431 AQLALKKMPSAEQEAISQSEYKRGVSAWNFDIEDLKVQASLVQDDDEI 478


>tr|B4FBG9|B4FBG9_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 741

 Score = 51.6 bits (122), Expect = 3e-05
 Identities = 24/46 (52%), Positives = 33/46 (71%)
 Frame = +3

Query: 3   ALLASRKPAFLQEEERSRNEYKRGVSCWSFDVESLKDQAAAIHDEE 140
           A LA +K    ++E  S +EY+RGVS W+FD+E LK QA+ IHD+E
Sbjct: 326 AQLALKKMPSSEQEALSLSEYQRGVSAWNFDIEDLKAQASLIHDDE 371


>tr|Q10SQ6|Q10SQ6_ORYSJ Os03g0114300 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0114300 PE=4 SV=1
          Length = 741

 Score = 50.8 bits (120), Expect = 5e-05
 Identities = 23/46 (50%), Positives = 33/46 (71%)
 Frame = +3

Query: 3   ALLASRKPAFLQEEERSRNEYKRGVSCWSFDVESLKDQAAAIHDEE 140
           A LA +K    ++E  S +EY+RGVS W+FD+E LK QA+ IHD++
Sbjct: 326 AQLALKKMPSSEQEALSMSEYQRGVSAWNFDIEDLKAQASLIHDDD 371


>tr|B8ALY6|B8ALY6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_09719 PE=4 SV=1
          Length = 744

 Score = 50.8 bits (120), Expect = 5e-05
 Identities = 23/46 (50%), Positives = 33/46 (71%)
 Frame = +3

Query: 3   ALLASRKPAFLQEEERSRNEYKRGVSCWSFDVESLKDQAAAIHDEE 140
           A LA +K    ++E  S +EY+RGVS W+FD+E LK QA+ IHD++
Sbjct: 326 AQLALKKMPSSEQEALSMSEYQRGVSAWNFDIEDLKAQASLIHDDD 371


>tr|A7PM90|A7PM90_VITVI Chromosome chr14 scaffold_21, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00020728001
           PE=4 SV=1
          Length = 679

 Score = 50.4 bits (119), Expect = 7e-05
 Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
 Frame = +3

Query: 6   LLASRKPAFLQEEERSRNEYKRGVSCWSFDVESLKDQAAAIHDEEEISST-DKGLAVLSP 182
           LL   K  +  +E+ S+ EY RG+S W+F++E LK+QAA I D + IS+  D   +  +P
Sbjct: 309 LLVQNKALYGDKEQLSQQEYIRGISAWNFNLEDLKNQAALIQDYDVISNVDDPDCSNAAP 368

Query: 183 CGEEARQSLTLDTH 224
             E +   L L  H
Sbjct: 369 SHEVSLPMLKLSPH 382


>tr|Q9SU46|Q9SU46_ARATH Putative uncharacterized protein AT4g24100
           OS=Arabidopsis thaliana GN=AT4g24100 PE=4 SV=1
          Length = 710

 Score = 50.1 bits (118), Expect = 9e-05
 Identities = 22/46 (47%), Positives = 33/46 (71%)
 Frame = +3

Query: 9   LASRKPAFLQEEERSRNEYKRGVSCWSFDVESLKDQAAAIHDEEEI 146
           LA ++ A   EE  S++EY+RGVS W+FDV  LK QA+ ++D E++
Sbjct: 336 LALKRMATADEEAISQSEYQRGVSAWNFDVRDLKTQASLVNDREQV 381


>tr|Q8W2Y7|Q8W2Y7_ORYSA Putative Ste-20 related kinase, 3'-partial
           (Fragment) OS=Oryza sativa GN=OSJNBa0056G08.1 PE=4 SV=1
          Length = 541

 Score = 49.7 bits (117), Expect = 1e-04
 Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
 Frame = +3

Query: 3   ALLASRKPAFLQEEERSRNEYKRGVSCWSFDVESLKDQAAAIHDEE--EISSTD 158
           A LA +K    ++E  S +EY+RGVS W+FDVE LK QA+ I D+E  EI   D
Sbjct: 320 AQLALKKMPSSEQEALSMSEYQRGVSAWNFDVEDLKAQASLIRDDEPPEIKEDD 373


>tr|Q8RWU9|Q8RWU9_ARATH Putative uncharacterized protein At4g24100
           OS=Arabidopsis thaliana GN=At4g24100 PE=2 SV=1
          Length = 709

 Score = 49.7 bits (117), Expect = 1e-04
 Identities = 28/81 (34%), Positives = 45/81 (55%)
 Frame = +3

Query: 9   LASRKPAFLQEEERSRNEYKRGVSCWSFDVESLKDQAAAIHDEEEISSTDKGLAVLSPCG 188
           LA ++ A   EE  S++EY+RGVS W+FDV  LK QA+ + D++++              
Sbjct: 329 LALKRMATADEEAISQSEYQRGVSAWNFDVRDLKTQASLLIDDDDL-------------- 374

Query: 189 EEARQSLTLDTHQFRRSYDRE 251
           EE+++   +   QF +  DRE
Sbjct: 375 EESKEDEEILCAQFNKVNDRE 395


>tr|Q337B2|Q337B2_ORYSJ Os10g0518800 protein OS=Oryza sativa subsp.
           japonica GN=Os10g0518800 PE=4 SV=2
          Length = 741

 Score = 49.7 bits (117), Expect = 1e-04
 Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
 Frame = +3

Query: 3   ALLASRKPAFLQEEERSRNEYKRGVSCWSFDVESLKDQAAAIHDEE--EISSTD 158
           A LA +K    ++E  S +EY+RGVS W+FDVE LK QA+ I D+E  EI   D
Sbjct: 320 AQLALKKMPSSEQEALSMSEYQRGVSAWNFDVEDLKAQASLIRDDEPPEIKEDD 373