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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK952456
Clone id TST38A01NGRL0014_C06
Library
Length 649
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0014_C06. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GGTGGACAGGGCACGTGGCTTCGGCAACTTGGAAGCGGGGGCGTGGGATCTTGGTCTTCA
TCGAAAGCGGGGGTTTCCTCCTGCTCTATTGCGTGCTCACGCATACACAGACGCACAACA
CAACCCAACCCAAGGGCGTCCCTCCCGTGAGTTTCTCCTACCCACTCTCCTCTCACAGGT
AAAACCGAGCGTTCATGGAAGCTTCCTCTCTGCAGACGCAAAAGTAAAGTTCTCTCCTTT
GGGTTGCTTTCTGCCCCCTTCTAATGTTACAATCTTCGGGGCTCTCGATCGAGCTTTGCA
TTACTCTCTGGTGATGCATGCAATGGCTGCAGTTCCCTCTCTTCATCATAGCGGCCTCAC
CGCCTCCTGCGCAGAGCTCCCTGCGGCCTTACCTTCATCAGAGTTCAGTGGGTCTTCCTA
CCGGGCAGTACCTATGTGCATTTTAGTCGAAAAGCAGCACCAGCTGAGGGGCTTTGCGTC
AACAACCCCCTATCTGACAGGGGGACAACAAAGGAGAAGGAAAAATTATGGGATTTTCTC
TTCCGAACTCAGCAACACAGCTGTGGAGCGACTGCTGGAATTTGCGAGAGAGCCAGCTCC
TTCAGAACAAGCAGGCCAGCTAATCAGTGGGCTTCAAAGTGCGGAGCTC
■■Homology search results ■■ -
sp_hit_id Q5G269
Definition sp|Q5G269|NETR_PONPY Neurotrypsin OS=Pongo pygmaeus
Align length 28
Score (bit) 25.4
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952456|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0014_C06, 5'
         (649 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5G269|NETR_PONPY Neurotrypsin OS=Pongo pygmaeus GN=PRSS12 PE...    25   3.4  
sp|A1VRP1|T23O_POLNA Tryptophan 2,3-dioxygenase OS=Polaromonas n...    31   6.4  

>sp|Q5G269|NETR_PONPY Neurotrypsin OS=Pongo pygmaeus GN=PRSS12 PE=3
           SV=1
          Length = 877

 Score = 25.4 bits (54), Expect(2) = 3.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 315 CMQWLQFPLFIIAASPPPAQSSLRPYLH 398
           C+QW + P F +  SPP + + LR   H
Sbjct: 111 CLQWAEVPPF-LERSPPASWAQLRGQRH 137



 Score = 25.0 bits (53), Expect(2) = 3.4
 Identities = 23/77 (29%), Positives = 29/77 (37%), Gaps = 2/77 (2%)
 Frame = +2

Query: 59  HRKRGFPPALLRAHAYTDAQHNPTQGRPSREFLLPTLLSQVKPSVHGSFLSADAKVKFSP 238
           HR R  PP  L+   Y   Q  P + RP           +  P+     L A    +  P
Sbjct: 33  HRHRHSPPPGLQYPYYLPTQQRPPRTRPPPPLPRFPRPPRALPAQRPHALQAGHTPRPHP 92

Query: 239 LGCFL--PPSNVTIFGA 283
            GC    P  +VT FGA
Sbjct: 93  WGCPAGEPWVSVTDFGA 109


>sp|A1VRP1|T23O_POLNA Tryptophan 2,3-dioxygenase OS=Polaromonas
           naphthalenivorans (strain CJ2) GN=kynA PE=3 SV=1
          Length = 282

 Score = 30.8 bits (68), Expect = 6.4
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 345 IIAASPPPAQSSLRPYLHQSSVGLPTGQYLC 437
           ++A   PP  S++RPYL  SS G  + QY C
Sbjct: 104 VLATMTPPEYSAIRPYLASSS-GFQSAQYRC 133
tr_hit_id B7RMK2
Definition tr|B7RMK2|B7RMK2_9RHOB Putative uncharacterized protein OS=Roseobacter sp. GAI101
Align length 38
Score (bit) 36.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952456|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0014_C06, 5'
         (649 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7RMK2|B7RMK2_9RHOB Putative uncharacterized protein OS=Roseo...    37   1.3  
tr|Q8ZNP0|Q8ZNP0_SALTY Putative glycohydrolase OS=Salmonella typ...    35   4.0  
tr|Q8Z5D1|Q8Z5D1_SALTI Putative hydrolase OS=Salmonella typhi GN...    35   4.0  
tr|Q5PLT9|Q5PLT9_SALPA Putative hydrolase OS=Salmonella paratyph...    35   4.0  
tr|Q57MJ7|Q57MJ7_SALCH Putative glycohydrolase OS=Salmonella cho...    35   4.0  
tr|B5RBY3|B5RBY3_SALG2 Putative hydrolase OS=Salmonella gallinar...    35   4.0  
tr|B5R0D5|B5R0D5_SALEP Putative hydrolase OS=Salmonella enteriti...    35   4.0  
tr|B5FMV8|B5FMV8_SALDC ADP-ribosylglycohydrolase family protein ...    35   4.0  
tr|B5EXY2|B5EXY2_SALA4 ADP-ribosylglycohydrolase family protein ...    35   4.0  
tr|B5BF40|B5BF40_SALPK Putative hydrolase OS=Salmonella paratyph...    35   4.0  
tr|B4TNJ9|B4TNJ9_SALSV ADP-ribosylglycohydrolase family protein ...    35   4.0  
tr|B4T9V7|B4T9V7_SALHS ADP-ribosylglycohydrolase family protein ...    35   4.0  
tr|B4SXX4|B4SXX4_SALNS ADP-ribosylglycohydrolase family protein ...    35   4.0  
tr|A9N7J6|A9N7J6_SALPB Putative uncharacterized protein OS=Salmo...    35   4.0  
tr|B5Q3I2|B5Q3I2_SALVI ADP-ribosylglycohydrolase family protein ...    35   4.0  
tr|B5PQC1|B5PQC1_SALHA ADP-ribosylglycohydrolase family protein ...    35   4.0  
tr|B5PB36|B5PB36_SALET ADP-ribosylglycohydrolase family protein ...    35   4.0  
tr|B5P2Q1|B5P2Q1_SALET ADP-ribosylglycohydrolase family protein ...    35   4.0  
tr|B5NJV9|B5NJV9_SALET ADP-ribosylglycohydrolase family protein ...    35   4.0  
tr|B5NEE0|B5NEE0_SALET ADP-ribosylglycohydrolase family protein ...    35   4.0  
tr|B5MXF2|B5MXF2_SALET ADP-ribosylglycohydrolase family protein ...    35   4.0  
tr|B5MM38|B5MM38_SALET ADP-ribosylglycohydrolase family protein ...    35   4.0  
tr|B5CC70|B5CC70_SALET ADP-ribosylglycohydrolase family protein ...    35   4.0  
tr|B5C5N4|B5C5N4_SALET ADP-ribosylglycohydrolase family protein ...    35   4.0  
tr|B4A888|B4A888_SALNE ADP-ribosylglycohydrolase family protein ...    35   4.0  
tr|B3Y9V8|B3Y9V8_SALET ADP-ribosylglycohydrolase family protein ...    35   4.0  
tr|Q55Q95|Q55Q95_CRYNE Putative uncharacterized protein OS=Crypt...    35   4.0  
tr|A8H4K5|A8H4K5_SHEPA Electron-transferring-flavoprotein dehydr...    34   6.7  

>tr|B7RMK2|B7RMK2_9RHOB Putative uncharacterized protein
           OS=Roseobacter sp. GAI101 GN=RGAI101_3063 PE=4 SV=1
          Length = 671

 Score = 36.6 bits (83), Expect = 1.3
 Identities = 18/38 (47%), Positives = 21/38 (55%)
 Frame = -3

Query: 140 DALGLGCVVRLCMREHAIEQEETPAFDEDQDPTPPLPS 27
           D L  G V  +C    AI   E  AFD+D DP PPLP+
Sbjct: 425 DRLLAGGVTPICGLTEAILAAEAAAFDQDPDPVPPLPA 462


>tr|Q8ZNP0|Q8ZNP0_SALTY Putative glycohydrolase OS=Salmonella
           typhimurium GN=yegU PE=4 SV=1
          Length = 334

 Score = 35.0 bits (79), Expect = 4.0
 Identities = 22/71 (30%), Positives = 38/71 (53%)
 Frame = +2

Query: 218 AKVKFSPLGCFLPPSNVTIFGALDRALHYSLVMHAMAAVPSLHHSGLTASCAELPAALPS 397
           A ++ SPLGC LPP+N+T F          +   A+A+ P+ H S L  + A + A   S
Sbjct: 133 AAMRVSPLGCLLPPTNLTAF----------IAEVALASSPT-HKSDLAVAGAVVVAWAVS 181

Query: 398 SEFSGSSYRAV 430
              +G +++++
Sbjct: 182 RAVNGDTWQSI 192


>tr|Q8Z5D1|Q8Z5D1_SALTI Putative hydrolase OS=Salmonella typhi
           GN=STY2372 PE=4 SV=1
          Length = 334

 Score = 35.0 bits (79), Expect = 4.0
 Identities = 22/71 (30%), Positives = 38/71 (53%)
 Frame = +2

Query: 218 AKVKFSPLGCFLPPSNVTIFGALDRALHYSLVMHAMAAVPSLHHSGLTASCAELPAALPS 397
           A ++ SPLGC LPP+N+T F          +   A+A+ P+ H S L  + A + A   S
Sbjct: 133 AAMRVSPLGCLLPPTNLTAF----------IAEVALASSPT-HKSDLAVAGAVVVAWAVS 181

Query: 398 SEFSGSSYRAV 430
              +G +++++
Sbjct: 182 RAVNGDTWQSI 192


>tr|Q5PLT9|Q5PLT9_SALPA Putative hydrolase OS=Salmonella paratyphi A
           GN=yegU PE=4 SV=1
          Length = 334

 Score = 35.0 bits (79), Expect = 4.0
 Identities = 22/71 (30%), Positives = 38/71 (53%)
 Frame = +2

Query: 218 AKVKFSPLGCFLPPSNVTIFGALDRALHYSLVMHAMAAVPSLHHSGLTASCAELPAALPS 397
           A ++ SPLGC LPP+N+T F          +   A+A+ P+ H S L  + A + A   S
Sbjct: 133 AAMRVSPLGCLLPPTNLTAF----------IAEVALASSPT-HKSDLAVAGAVVVAWAVS 181

Query: 398 SEFSGSSYRAV 430
              +G +++++
Sbjct: 182 RAVNGDTWQSI 192


>tr|Q57MJ7|Q57MJ7_SALCH Putative glycohydrolase OS=Salmonella
           choleraesuis GN=yegU PE=4 SV=1
          Length = 334

 Score = 35.0 bits (79), Expect = 4.0
 Identities = 22/71 (30%), Positives = 38/71 (53%)
 Frame = +2

Query: 218 AKVKFSPLGCFLPPSNVTIFGALDRALHYSLVMHAMAAVPSLHHSGLTASCAELPAALPS 397
           A ++ SPLGC LPP+N+T F          +   A+A+ P+ H S L  + A + A   S
Sbjct: 133 AAMRVSPLGCLLPPTNLTAF----------IAEVALASSPT-HKSDLAVAGAVVVAWAVS 181

Query: 398 SEFSGSSYRAV 430
              +G +++++
Sbjct: 182 RAVNGDTWQSI 192


>tr|B5RBY3|B5RBY3_SALG2 Putative hydrolase OS=Salmonella gallinarum
           (strain 287/91 / NCTC 13346) GN=yegU PE=4 SV=1
          Length = 334

 Score = 35.0 bits (79), Expect = 4.0
 Identities = 22/71 (30%), Positives = 38/71 (53%)
 Frame = +2

Query: 218 AKVKFSPLGCFLPPSNVTIFGALDRALHYSLVMHAMAAVPSLHHSGLTASCAELPAALPS 397
           A ++ SPLGC LPP+N+T F          +   A+A+ P+ H S L  + A + A   S
Sbjct: 133 AAMRVSPLGCLLPPTNLTAF----------IAEVALASSPT-HKSDLAVAGAVVVAWAVS 181

Query: 398 SEFSGSSYRAV 430
              +G +++++
Sbjct: 182 RAVNGDTWQSI 192


>tr|B5R0D5|B5R0D5_SALEP Putative hydrolase OS=Salmonella enteritidis
           PT4 (strain P125109) GN=yegU PE=4 SV=1
          Length = 334

 Score = 35.0 bits (79), Expect = 4.0
 Identities = 22/71 (30%), Positives = 38/71 (53%)
 Frame = +2

Query: 218 AKVKFSPLGCFLPPSNVTIFGALDRALHYSLVMHAMAAVPSLHHSGLTASCAELPAALPS 397
           A ++ SPLGC LPP+N+T F          +   A+A+ P+ H S L  + A + A   S
Sbjct: 133 AAMRVSPLGCLLPPTNLTAF----------IAEVALASSPT-HKSDLAVAGAVVVAWAVS 181

Query: 398 SEFSGSSYRAV 430
              +G +++++
Sbjct: 182 RAVNGDTWQSI 192


>tr|B5FMV8|B5FMV8_SALDC ADP-ribosylglycohydrolase family protein
           OS=Salmonella dublin (strain CT_02021853) GN=SeD_A2487
           PE=4 SV=1
          Length = 334

 Score = 35.0 bits (79), Expect = 4.0
 Identities = 22/71 (30%), Positives = 38/71 (53%)
 Frame = +2

Query: 218 AKVKFSPLGCFLPPSNVTIFGALDRALHYSLVMHAMAAVPSLHHSGLTASCAELPAALPS 397
           A ++ SPLGC LPP+N+T F          +   A+A+ P+ H S L  + A + A   S
Sbjct: 133 AAMRVSPLGCLLPPTNLTAF----------IAEVALASSPT-HKSDLAVAGAVVVAWAVS 181

Query: 398 SEFSGSSYRAV 430
              +G +++++
Sbjct: 182 RAVNGDTWQSI 192


>tr|B5EXY2|B5EXY2_SALA4 ADP-ribosylglycohydrolase family protein
           OS=Salmonella agona (strain SL483) GN=SeAg_B2286 PE=4
           SV=1
          Length = 334

 Score = 35.0 bits (79), Expect = 4.0
 Identities = 22/71 (30%), Positives = 38/71 (53%)
 Frame = +2

Query: 218 AKVKFSPLGCFLPPSNVTIFGALDRALHYSLVMHAMAAVPSLHHSGLTASCAELPAALPS 397
           A ++ SPLGC LPP+N+T F          +   A+A+ P+ H S L  + A + A   S
Sbjct: 133 AAMRVSPLGCLLPPTNLTAF----------IAEVALASSPT-HKSDLAVAGAVVVAWAVS 181

Query: 398 SEFSGSSYRAV 430
              +G +++++
Sbjct: 182 RAVNGDTWQSI 192


>tr|B5BF40|B5BF40_SALPK Putative hydrolase OS=Salmonella paratyphi A
           (strain AKU_12601) GN=SSPA0668 PE=4 SV=1
          Length = 334

 Score = 35.0 bits (79), Expect = 4.0
 Identities = 22/71 (30%), Positives = 38/71 (53%)
 Frame = +2

Query: 218 AKVKFSPLGCFLPPSNVTIFGALDRALHYSLVMHAMAAVPSLHHSGLTASCAELPAALPS 397
           A ++ SPLGC LPP+N+T F          +   A+A+ P+ H S L  + A + A   S
Sbjct: 133 AAMRVSPLGCLLPPTNLTAF----------IAEVALASSPT-HKSDLAVAGAVVVAWAVS 181

Query: 398 SEFSGSSYRAV 430
              +G +++++
Sbjct: 182 RAVNGDTWQSI 192