DK952333
Clone id TST38A01NGRL0013_M23
Library
Length 588
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0013_M23. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence
CTGCATGTTTTGTACGCGAGCTTCTCATCGTTCTCGCCCAAATGCCCCGTTCTCACCAAG
CTCGACCTGGTTTCACCGCAACTGGTGGAAGTCGTGTTTGAAAATGGCCAGACTTTTCAC
CTCTCTGCTGAGTTTCTCAGGGTGCAGTCGCCTGCTGCAGACAGCAAGCGGAGGACAATA
TCAGGAGAAAAGATCTTCTGCTTGGAGTGTCCAAGGCCATTACAAAGACTGACACTGACG
TGTAGCAATAGCTTGTCCATGTGGCTCAAGTGCAATGCGCACGTGACAATTTTTGTGAAT
AAATGAATTGAGGAATATATTTTCACTTAGTTTTACCTATGGTGACCGGGATATCGCTTA
ACAATATTCTGTCTTGCATCCACTTAGTGGCAGGTAGAATCTCAGAAAAATCTACAAAAT
ACATTGTTTGTTACATTTACTTTTTGAACAGGTCATTGCCGGAAGGAGAAATGTAGGCAT
AATGTCTATGGAACCAGTGGGCAATTATGGCATAAGGATTTGCTTTGATGACTTACATAG
TACTGGTATATACTCATGGGACTACCTATACCATTTAGGTGCCAATAA
■■Homology search results ■■ -
sp_hit_id Q1LUA6
Definition sp|Q1LUA6|TRIO_DANRE Triple functional domain protein OS=Danio rerio
Align length 49
Score (bit) 32.0
E-value 2.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK952333|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0013_M23, 5'
(588 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q1LUA6|TRIO_DANRE Triple functional domain protein OS=Danio r... 32 2.3
sp|Q0KL02|TRIO_MOUSE Triple functional domain protein OS=Mus mus... 32 3.1
sp|O75962|TRIO_HUMAN Triple functional domain protein OS=Homo sa... 32 3.1
sp|Q2VIS4|FILA2_MOUSE Filaggrin-2 OS=Mus musculus GN=Flg2 PE=2 SV=2 30 6.8

>sp|Q1LUA6|TRIO_DANRE Triple functional domain protein OS=Danio
rerio GN=trio PE=3 SV=1
Length = 3028

Score = 32.0 bits (71), Expect = 2.3
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +3

Query: 12 VRELLIVLAQMPRSHQARPGFTATGGSRV*KWPDFSPLC*VSQGAVACC 158
+R L+ LA +P + GFT R KW PL + Q + CC
Sbjct: 45 LRRLIAYLAGIPSEDVCKHGFTVIVDMRGSKWDSIKPLLKILQESFPCC 93


>sp|Q0KL02|TRIO_MOUSE Triple functional domain protein OS=Mus
musculus GN=Trio PE=1 SV=2
Length = 3043

Score = 31.6 bits (70), Expect = 3.1
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +3

Query: 12 VRELLIVLAQMPRSHQARPGFTATGGSRV*KWPDFSPLC*VSQGAVACC 158
+R L+ LA +P + GFT R KW PL + Q + CC
Sbjct: 45 LRRLISYLACIPSEEVCKRGFTVIVDMRGSKWDSIKPLLKILQESFPCC 93


>sp|O75962|TRIO_HUMAN Triple functional domain protein OS=Homo
sapiens GN=TRIO PE=1 SV=1
Length = 3038

Score = 31.6 bits (70), Expect = 3.1
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +3

Query: 12 VRELLIVLAQMPRSHQARPGFTATGGSRV*KWPDFSPLC*VSQGAVACC 158
+R L+ LA +P + GFT R KW PL + Q + CC
Sbjct: 45 LRRLISYLACIPSEEVCKRGFTVIVDMRGSKWDSIKPLLKILQESFPCC 93


>sp|Q2VIS4|FILA2_MOUSE Filaggrin-2 OS=Mus musculus GN=Flg2 PE=2 SV=2
Length = 2362

Score = 30.4 bits (67), Expect = 6.8
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +2

Query: 29 RSRPNAPFSPSSTWFHRNWWKSCLKMARLFTSLLSFSGCSRLLQTASGGQYQEKRSS 199
R R +PF PS H W+S +++ + L G + T SG QY +SS
Sbjct: 2025 RGRSQSPFHPS----HSIHWQSKCTISKKSSRLSGHYGRNHFQSTISGNQYDSSQSS 2077


tr_hit_id A7PLV7
Definition tr|A7PLV7|A7PLV7_VITVI Chromosome chr14 scaffold_21, whole genome shotgun sequence OS=Vitis vinifera
Align length 47
Score (bit) 86.3
E-value 1.0e-15
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK952333|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0013_M23, 5'
(588 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7PLV7|A7PLV7_VITVI Chromosome chr14 scaffold_21, whole genom... 86 1e-15
tr|B8LMM3|B8LMM3_PICSI Putative uncharacterized protein OS=Picea... 86 2e-15
tr|Q6H743|Q6H743_ORYSJ Os02g0197800 protein OS=Oryza sativa subs... 81 4e-14
tr|Q3E7W6|Q3E7W6_ARATH Uncharacterized protein At3g27340.1 (At3g... 81 4e-14
tr|B6U6W2|B6U6W2_MAIZE Putative uncharacterized protein OS=Zea m... 81 4e-14
tr|A2X221|A2X221_ORYSI Putative uncharacterized protein OS=Oryza... 81 4e-14
tr|Q0JGU2|Q0JGU2_ORYSJ Os01g0904300 protein (Fragment) OS=Oryza ... 78 3e-13
tr|A3A0N5|A3A0N5_ORYSJ Putative uncharacterized protein OS=Oryza... 78 3e-13
tr|A2WY25|A2WY25_ORYSI Putative uncharacterized protein OS=Oryza... 78 4e-13
tr|Q2WBG1|Q2WBG1_MAGMM Uncharacterized protein conserved in bact... 76 1e-12
tr|A8J4V4|A8J4V4_CHLRE Predicted protein (Fragment) OS=Chlamydom... 74 6e-12
tr|A9SAX8|A9SAX8_PHYPA Predicted protein (Fragment) OS=Physcomit... 71 5e-11
tr|A4U1C1|A4U1C1_9PROT Protein containing DUF971 OS=Magnetospiri... 69 1e-10
tr|A9NZC9|A9NZC9_PICSI Putative uncharacterized protein OS=Picea... 69 2e-10
tr|A5G0E3|A5G0E3_ACICJ Putative uncharacterized protein OS=Acidi... 69 3e-10
tr|A9W635|A9W635_METEP Putative uncharacterized protein OS=Methy... 68 3e-10
tr|B7KQF1|B7KQF1_METCH Putative uncharacterized protein OS=Methy... 68 3e-10
tr|B1ZD55|B1ZD55_METPB Putative uncharacterized protein OS=Methy... 67 7e-10
tr|B8ELM9|B8ELM9_METSI Putative uncharacterized protein OS=Methy... 67 7e-10
tr|Q54GQ0|Q54GQ0_DICDI Putative uncharacterized protein (Fragmen... 67 7e-10
tr|Q8RZ62|Q8RZ62_ORYSJ B1065G12.33 protein OS=Oryza sativa subsp... 66 2e-09
tr|A6X142|A6X142_OCHA4 Putative uncharacterized protein OS=Ochro... 65 2e-09
tr|Q98MK7|Q98MK7_RHILO Mll0540 protein OS=Rhizobium loti GN=mll0... 65 4e-09
tr|B6IU05|B6IU05_RHOCS Putative uncharacterized protein OS=Rhodo... 65 4e-09
tr|Q8YGY7|Q8YGY7_BRUME PHOSPHORIBOSYLFORMIMINO-5-AMINOIMIDAZOLE ... 64 5e-09
tr|Q8G0X3|Q8G0X3_BRUSU Putative uncharacterized protein OS=Bruce... 64 5e-09
tr|Q57DG2|Q57DG2_BRUAB Putative uncharacterized protein OS=Bruce... 64 5e-09
tr|Q2YNT6|Q2YNT6_BRUA2 Putative uncharacterized protein OS=Bruce... 64 5e-09
tr|B2S5I2|B2S5I2_BRUA1 Putative uncharacterized protein OS=Bruce... 64 5e-09
tr|B0CLT1|B0CLT1_BRUSI Putative uncharacterized protein OS=Bruce... 64 5e-09

>tr|A7PLV7|A7PLV7_VITVI Chromosome chr14 scaffold_21, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00020582001
PE=4 SV=1
Length = 133

Score = 86.3 bits (212), Expect = 1e-15
Identities = 37/47 (78%), Positives = 42/47 (89%)
Frame = +2

Query: 446 EQVIAGRRNVGIMSMEPVGNYGIRICFDDLHSTGIYSWDYLYHLGAN 586
E+VI GRR+VGIMS EPVGNYG+RI FDDLH TGIY+WDY YHLG+N
Sbjct: 62 EKVIFGRRHVGIMSAEPVGNYGVRILFDDLHKTGIYTWDYFYHLGSN 108



Score = 65.5 bits (158), Expect = 2e-09
Identities = 32/50 (64%), Positives = 38/50 (76%)
Frame = +1

Query: 46 PVLTKLDLVSPQLVEVVFENGQTFHLSAEFLRVQSPAADSKRRTISGEKI 195
P LTK L P+ VEV F+NG F+LSAEFLR+ SPAADSK R+I GEK+
Sbjct: 15 PRLTKFSLHPPKTVEVKFDNGSAFNLSAEFLRIHSPAADSKVRSIGGEKV 64


>tr|B8LMM3|B8LMM3_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 154

Score = 85.5 bits (210), Expect = 2e-15
Identities = 38/47 (80%), Positives = 44/47 (93%)
Frame = +2

Query: 446 EQVIAGRRNVGIMSMEPVGNYGIRICFDDLHSTGIYSWDYLYHLGAN 586
E+VI GRR+VGIMS+E VGNYGIRI FDDLH+TGIY+WDYLY+LGAN
Sbjct: 83 EKVITGRRHVGIMSVEQVGNYGIRITFDDLHNTGIYTWDYLYNLGAN 129



Score = 69.3 bits (168), Expect = 2e-10
Identities = 36/59 (61%), Positives = 43/59 (72%)
Frame = +1

Query: 19 SFSSFSPKCPVLTKLDLVSPQLVEVVFENGQTFHLSAEFLRVQSPAADSKRRTISGEKI 195
SF+S S + P LT+ L SP+ E+ + NG F LSAEFLRVQSPAADSK RTI GEK+
Sbjct: 27 SFTSSSAQTPRLTRFTLQSPKQAELEYGNGSRFSLSAEFLRVQSPAADSKIRTIQGEKV 85


>tr|Q6H743|Q6H743_ORYSJ Os02g0197800 protein OS=Oryza sativa subsp.
japonica GN=P0026H03.8 PE=2 SV=1
Length = 141

Score = 81.3 bits (199), Expect = 4e-14
Identities = 35/47 (74%), Positives = 42/47 (89%)
Frame = +2

Query: 446 EQVIAGRRNVGIMSMEPVGNYGIRICFDDLHSTGIYSWDYLYHLGAN 586
E+VI GRR+VGIMS E VGNYG+RI FDDLH TGI++WDYL+HLG+N
Sbjct: 70 EKVIFGRRHVGIMSAESVGNYGVRILFDDLHKTGIFTWDYLHHLGSN 116



Score = 68.2 bits (165), Expect = 3e-10
Identities = 36/62 (58%), Positives = 47/62 (75%)
Frame = +1

Query: 10 LYASFSSFSPKCPVLTKLDLVSPQLVEVVFENGQTFHLSAEFLRVQSPAADSKRRTISGE 189
L+A+ + P P LTKL L +P+ VEV FE+G +FHL AEFLRV SPAADSK R+++GE
Sbjct: 13 LHAAQAQAQP--PRLTKLALRAPKFVEVEFEDGSSFHLPAEFLRVYSPAADSKIRSVAGE 70

Query: 190 KI 195
K+
Sbjct: 71 KV 72


>tr|Q3E7W6|Q3E7W6_ARATH Uncharacterized protein At3g27340.1
(At3g27340) OS=Arabidopsis thaliana GN=At3g27340 PE=2
SV=1
Length = 141

Score = 81.3 bits (199), Expect = 4e-14
Identities = 35/47 (74%), Positives = 40/47 (85%)
Frame = +2

Query: 446 EQVIAGRRNVGIMSMEPVGNYGIRICFDDLHSTGIYSWDYLYHLGAN 586
E+VI+GRR VGIMS EPVGNYG+R+ FDDLH TGIY WDY Y LG+N
Sbjct: 68 EKVISGRRYVGIMSAEPVGNYGVRLVFDDLHRTGIYPWDYFYELGSN 114



Score = 55.8 bits (133), Expect = 2e-06
Identities = 26/50 (52%), Positives = 36/50 (72%)
Frame = +1

Query: 46 PVLTKLDLVSPQLVEVVFENGQTFHLSAEFLRVQSPAADSKRRTISGEKI 195
P L+ +VSP+ VEV + +G F+ S+EFLR+ SPAAD K R+I GEK+
Sbjct: 21 PKLSGFSIVSPKQVEVEYADGTKFNFSSEFLRIHSPAADGKVRSIGGEKV 70


>tr|B6U6W2|B6U6W2_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 138

Score = 81.3 bits (199), Expect = 4e-14
Identities = 35/47 (74%), Positives = 42/47 (89%)
Frame = +2

Query: 446 EQVIAGRRNVGIMSMEPVGNYGIRICFDDLHSTGIYSWDYLYHLGAN 586
E+VI GRR+VGIMS E VGNYG+RI FDDLH TGI++WDYL+HLG+N
Sbjct: 67 EKVIFGRRHVGIMSAESVGNYGVRILFDDLHKTGIFTWDYLHHLGSN 113



Score = 62.8 bits (151), Expect = 1e-08
Identities = 30/50 (60%), Positives = 37/50 (74%)
Frame = +1

Query: 46 PVLTKLDLVSPQLVEVVFENGQTFHLSAEFLRVQSPAADSKRRTISGEKI 195
P LTK L P+ VE+ F +G +FHLSAEFLRV SPA DSK R++ GEK+
Sbjct: 20 PRLTKFALHPPKFVEIEFADGSSFHLSAEFLRVYSPAVDSKIRSVGGEKV 69


>tr|A2X221|A2X221_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_06246 PE=4 SV=1
Length = 141

Score = 81.3 bits (199), Expect = 4e-14
Identities = 35/47 (74%), Positives = 42/47 (89%)
Frame = +2

Query: 446 EQVIAGRRNVGIMSMEPVGNYGIRICFDDLHSTGIYSWDYLYHLGAN 586
E+VI GRR+VGIMS E VGNYG+RI FDDLH TGI++WDYL+HLG+N
Sbjct: 70 EKVIFGRRHVGIMSAESVGNYGVRILFDDLHKTGIFTWDYLHHLGSN 116



Score = 68.2 bits (165), Expect = 3e-10
Identities = 36/62 (58%), Positives = 47/62 (75%)
Frame = +1

Query: 10 LYASFSSFSPKCPVLTKLDLVSPQLVEVVFENGQTFHLSAEFLRVQSPAADSKRRTISGE 189
L+A+ + P P LTKL L +P+ VEV FE+G +FHL AEFLRV SPAADSK R+++GE
Sbjct: 13 LHAAQAQAQP--PRLTKLALRAPKFVEVEFEDGSSFHLPAEFLRVYSPAADSKIRSVAGE 70

Query: 190 KI 195
K+
Sbjct: 71 KV 72


>tr|Q0JGU2|Q0JGU2_ORYSJ Os01g0904300 protein (Fragment) OS=Oryza
sativa subsp. japonica GN=Os01g0904300 PE=4 SV=1
Length = 116

Score = 78.2 bits (191), Expect = 3e-13
Identities = 35/46 (76%), Positives = 40/46 (86%)
Frame = +2

Query: 446 EQVIAGRRNVGIMSMEPVGNYGIRICFDDLHSTGIYSWDYLYHLGA 583
E+VI GRR VGIMS E VGNYGIRI FDDLH TGI++WDYL+HLG+
Sbjct: 45 EKVIFGRRYVGIMSAESVGNYGIRILFDDLHKTGIFTWDYLHHLGS 90



Score = 54.3 bits (129), Expect = 5e-06
Identities = 26/37 (70%), Positives = 31/37 (83%)
Frame = +1

Query: 85 VEVVFENGQTFHLSAEFLRVQSPAADSKRRTISGEKI 195
VEV F +G +FHLSAEFLRV SPAADSK ++SGEK+
Sbjct: 11 VEVEFTDGSSFHLSAEFLRVHSPAADSKIISVSGEKV 47


>tr|A3A0N5|A3A0N5_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_004357 PE=4 SV=1
Length = 141

Score = 78.2 bits (191), Expect = 3e-13
Identities = 35/46 (76%), Positives = 40/46 (86%)
Frame = +2

Query: 446 EQVIAGRRNVGIMSMEPVGNYGIRICFDDLHSTGIYSWDYLYHLGA 583
E+VI GRR VGIMS E VGNYGIRI FDDLH TGI++WDYL+HLG+
Sbjct: 70 EKVIFGRRYVGIMSAESVGNYGIRILFDDLHKTGIFTWDYLHHLGS 115



Score = 65.9 bits (159), Expect = 2e-09
Identities = 36/65 (55%), Positives = 46/65 (70%)
Frame = +1

Query: 1 LHVLYASFSSFSPKCPVLTKLDLVSPQLVEVVFENGQTFHLSAEFLRVQSPAADSKRRTI 180
+H A+ ++ P P LTKL L P+ VEV F +G +FHLSAEFLRV SPAADSK ++
Sbjct: 10 MHAAAAAAAAAQP--PRLTKLALHPPRSVEVEFTDGSSFHLSAEFLRVHSPAADSKIISV 67

Query: 181 SGEKI 195
SGEK+
Sbjct: 68 SGEKV 72


>tr|A2WY25|A2WY25_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_04828 PE=4 SV=1
Length = 141

Score = 77.8 bits (190), Expect = 4e-13
Identities = 35/46 (76%), Positives = 40/46 (86%)
Frame = +2

Query: 446 EQVIAGRRNVGIMSMEPVGNYGIRICFDDLHSTGIYSWDYLYHLGA 583
E+VI GRR VGIMS E VGNYGIRI FDDLH TGI++WDYL+HLG+
Sbjct: 70 EKVIFGRRYVGIMSAESVGNYGIRILFDDLHRTGIFTWDYLHHLGS 115



Score = 65.9 bits (159), Expect = 2e-09
Identities = 36/65 (55%), Positives = 46/65 (70%)
Frame = +1

Query: 1 LHVLYASFSSFSPKCPVLTKLDLVSPQLVEVVFENGQTFHLSAEFLRVQSPAADSKRRTI 180
+H A+ ++ P P LTKL L P+ VEV F +G +FHLSAEFLRV SPAADSK ++
Sbjct: 10 MHAAAAAAAAAQP--PRLTKLALHPPRSVEVEFTDGSSFHLSAEFLRVHSPAADSKIISV 67

Query: 181 SGEKI 195
SGEK+
Sbjct: 68 SGEKV 72


>tr|Q2WBG1|Q2WBG1_MAGMM Uncharacterized protein conserved in
bacteria OS=Magnetospirillum magneticum (strain AMB-1 /
ATCC 700264) GN=amb0010 PE=4 SV=1
Length = 149

Score = 76.3 bits (186), Expect = 1e-12
Identities = 31/46 (67%), Positives = 40/46 (86%)
Frame = +2

Query: 449 QVIAGRRNVGIMSMEPVGNYGIRICFDDLHSTGIYSWDYLYHLGAN 586
QV++GR +VGI+ +EPVGNY +++ FDDLH +GIYSWDYLY LGAN
Sbjct: 55 QVVSGRMHVGIIGVEPVGNYAVKLVFDDLHDSGIYSWDYLYGLGAN 100



Score = 35.0 bits (79), Expect = 3.2
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
Frame = +1

Query: 46 PVLTKLDLVSPQLVEVVFENGQTFHLSAEFLRVQSPAAD------SKRRTISG 186
P K+D V+ L V F +G+TF L AE LRV+SP+A+ +R+ +SG
Sbjct: 8 PEEIKVDKVARTL-RVAFSDGKTFVLPAELLRVESPSAEVQGHSPDQRQVVSG 59