DK952277 |
Clone id |
TST38A01NGRL0013_K15 |
Library |
TST38 |
Length |
505 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0013_K15. 5' end sequence. |
Accession |
DK952277 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
- |
Sequence |
AAGGTTACTTCTGCTCAACTCCTAAAGGAGGTCTTGCATGTCGTTATACCCTATCCAAGA GCGAGGGAGCAGGGCACTTCGTTGATGGCTTTCCAGCATCAGGAGGAAGAGGATCTTGCC TTTGCTGCTGCTTACGAGGATGACACCCCGACACCCTCTGGTTGAAGACCCTCGCTGGTT CCTCGTATTGGCAAGAGTATGGTGCCCATACAGACTGATGTTATCTTTGTAACCCCCAGT GGCGAGGAGTTGAACTCCAGAGCCCAACTTCCACTCTTTCTTAAATCAAATAAGGGCAGC CCAAGTATATCAGAGTTTATATGGATCGTTGATGGAATATCTCACAGGTCAACAAGATCT AATGCAGCACCTATAATTTAACTTGAAATCCCTGCGGGAGCTGATAATATAAAGAAGGTT GGTGCAAGGGTCAATGGAGTGCGAAATGGGAAGCGTATCCGCACAACCGAAACACTTCAG TCTGACAAAGACTTGAGAATACTGG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9H9J4 |
Definition |
sp|Q9H9J4|UBP42_HUMAN Ubiquitin carboxyl-terminal hydrolase 42 OS=Homo sapiens |
Align length |
41 |
Score (bit) |
33.9 |
E-value |
0.45 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7QIN6 |
Definition |
tr|A7QIN6|A7QIN6_VITVI Chromosome chr9 scaffold_104, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
124 |
Score (bit) |
62.4 |
E-value |
1.0e-08 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK952277|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0013_K15, 5' (505 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7QIN6|A7QIN6_VITVI Chromosome chr9 scaffold_104, whole genom... 62 1e-08 tr|A5BDX9|A5BDX9_VITVI Putative uncharacterized protein OS=Vitis... 60 8e-08 tr|A7PF70|A7PF70_VITVI Chromosome chr11 scaffold_13, whole genom... 59 1e-07 tr|Q9LW00|Q9LW00_ARATH Arabidopsis thaliana genomic DNA, chromos... 57 4e-07 tr|Q9XI36|Q9XI36_ARATH F9L1.28 protein (At1g15340) (At1g15340/F9... 57 5e-07 tr|Q8H7D1|Q8H7D1_ARATH Putative uncharacterized protein OS=Arabi... 57 5e-07 tr|A9NV84|A9NV84_PICSI Putative uncharacterized protein OS=Picea... 55 2e-06 tr|Q1EMS1|Q1EMS1_PLAMJ Putative DNA-binding protein (Fragment) O... 54 4e-06 tr|B7FJB8|B7FJB8_MEDTR Putative uncharacterized protein OS=Medic... 54 4e-06 tr|Q5I204|Q5I204_MAIZE Brain acid soluble protein 1 OS=Zea mays ... 54 6e-06 tr|A5AE76|A5AE76_VITVI Putative uncharacterized protein OS=Vitis... 53 7e-06 tr|Q8LK06|Q8LK06_MAIZE Methyl binding domain protein MBD109 OS=Z... 52 2e-05 tr|Q2QM23|Q2QM23_ORYSJ Os12g0620400 protein OS=Oryza sativa subs... 52 2e-05 tr|B8BN22|B8BN22_ORYSI Putative uncharacterized protein OS=Oryza... 52 2e-05 tr|B6TRL2|B6TRL2_MAIZE Brain acid soluble protein 1 OS=Zea mays ... 51 4e-05 tr|Q94IQ9|Q94IQ9_MAIZE Putative methyl-binding domain protein MB... 50 5e-05 tr|A4UQN7|A4UQN7_WHEAT MBD6 OS=Triticum aestivum PE=2 SV=1 50 6e-05 tr|Q94IQ8|Q94IQ8_MAIZE Putative methyl-binding domain protein MB... 49 2e-04 tr|Q1XG62|Q1XG62_CRYJA Putative methyl-binding domain protein OS... 48 3e-04 tr|A3CJI9|A3CJI9_ORYSJ Putative uncharacterized protein OS=Oryza... 46 0.001 tr|A9T1G1|A9T1G1_PHYPA Predicted protein OS=Physcomitrella paten... 44 0.004 tr|Q0WLE9|Q0WLE9_ARATH Putative uncharacterized protein At1g1534... 43 0.010 tr|A9S601|A9S601_PHYPA Predicted protein OS=Physcomitrella paten... 41 0.029 tr|A9U4Z1|A9U4Z1_PHYPA Predicted protein OS=Physcomitrella paten... 41 0.037 tr|A9T1F9|A9T1F9_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.083 tr|A9TZX2|A9TZX2_PHYPA Predicted protein (Fragment) OS=Physcomit... 39 0.14 tr|A7QF43|A7QF43_VITVI Chromosome undetermined scaffold_87, whol... 39 0.19 tr|A9S602|A9S602_PHYPA Predicted protein OS=Physcomitrella paten... 38 0.32 tr|B0VEX5|B0VEX5_9BACT Putative uncharacterized protein OS=Candi... 37 0.54 tr|A9T1G2|A9T1G2_PHYPA Predicted protein OS=Physcomitrella paten... 35 1.6
>tr|A7QIN6|A7QIN6_VITVI Chromosome chr9 scaffold_104, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00000334001 PE=4 SV=1 Length = 324
Score = 62.4 bits (150), Expect = 1e-08 Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 6/124 (4%) Frame = +1
Query: 142 DTPTPSG*RPSLVPRIGKSMVPIQTDVIFVTPSGEELNSRAQLPLFLKSNKGSPSISEFI 321 + P P + +P+ G P + +++F+ P+GEE+NSR QL +LKS+ G+P+ISEF Sbjct: 11 ELPAPPSWKKMFMPKKG---TPRKNEIVFIAPTGEEINSRKQLEQYLKSHPGNPAISEFD 67
Query: 322 WIVDGISHRSTR----SNAAPII*LEIPAGADNIKKVGARVNG-VRNGKRIR-TTETLQS 483 W RS R + A P PA ++ KK G + +G ++GK TE + Sbjct: 68 WGTGETPRRSARISEKAKATP------PAESEPPKKRGRKSSGSKKDGKETEAATEEQEG 121
Query: 484 DKDL 495 K++ Sbjct: 122 KKEI 125
>tr|A5BDX9|A5BDX9_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032961 PE=4 SV=1 Length = 311
Score = 59.7 bits (143), Expect = 8e-08 Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 6/107 (5%) Frame = +1
Query: 193 KSMVPIQTDVIFVTPSGEELNSRAQLPLFLKSNKGSPSISEFIWIVDGISHRSTR----S 360 K P + +++F+ P+GEE+NSR QL +LKS+ G+P+ISEF W RS R + Sbjct: 12 KKGTPRKNEIVFIAPTGEEINSRKQLEQYLKSHPGNPAISEFDWGTGETPRRSARISEKA 71
Query: 361 NAAPII*LEIPAGADNIKKVGARVNG-VRNGKRIR-TTETLQSDKDL 495 A P PA ++ KK G + +G ++GK TE + K++ Sbjct: 72 KATP------PAESEPPKKRGRKSSGSKKDGKETEAATEEQEGKKEI 112
>tr|A7PF70|A7PF70_VITVI Chromosome chr11 scaffold_13, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00016932001 PE=4 SV=1 Length = 311
Score = 58.9 bits (141), Expect = 1e-07 Identities = 28/72 (38%), Positives = 43/72 (59%) Frame = +1
Query: 142 DTPTPSG*RPSLVPRIGKSMVPIQTDVIFVTPSGEELNSRAQLPLFLKSNKGSPSISEFI 321 + P P G + +P+ G + P + ++IF +P+GEE+NS+ QL +LKS+ G P+I EF Sbjct: 14 ELPAPPGWKKKFMPKRG--LTPKKNEIIFTSPTGEEINSKRQLEQYLKSHPGGPAIQEFD 71
Query: 322 WIVDGISHRSTR 357 W RS R Sbjct: 72 WGTGETPRRSAR 83
>tr|Q9LW00|Q9LW00_ARATH Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MSJ11 (At3g15790) OS=Arabidopsis thaliana GN=At3g15790 PE=2 SV=1 Length = 254
Score = 57.4 bits (137), Expect = 4e-07 Identities = 29/72 (40%), Positives = 44/72 (61%) Frame = +1
Query: 142 DTPTPSG*RPSLVPRIGKSMVPIQTDVIFVTPSGEELNSRAQLPLFLKSNKGSPSISEFI 321 + P PS + P S+ +T+V+FV P+GEE+++R QL +LKS+ G+P+I+EF Sbjct: 11 ELPAPSSWKKLFYPNKVGSVK--KTEVVFVAPTGEEISNRKQLEQYLKSHPGNPAIAEFD 68
Query: 322 WIVDGISHRSTR 357 W G RS R Sbjct: 69 WTTSGTPRRSAR 80
>tr|Q9XI36|Q9XI36_ARATH F9L1.28 protein (At1g15340) (At1g15340/F9L1_28) OS=Arabidopsis thaliana GN=At1g15340 PE=2 SV=1 Length = 384
Score = 57.0 bits (136), Expect = 5e-07 Identities = 27/72 (37%), Positives = 45/72 (62%) Frame = +1
Query: 142 DTPTPSG*RPSLVPRIGKSMVPIQTDVIFVTPSGEELNSRAQLPLFLKSNKGSPSISEFI 321 + P P+ + P+ ++ P +T+++FV P+GEE++SR QL +LK++ G+P ISEF Sbjct: 11 ELPAPASWKKLFYPK--RAGTPRKTEIVFVAPTGEEISSRKQLEQYLKAHPGNPVISEFE 68
Query: 322 WIVDGISHRSTR 357 W RS+R Sbjct: 69 WTTGETPRRSSR 80
>tr|Q8H7D1|Q8H7D1_ARATH Putative uncharacterized protein OS=Arabidopsis thaliana PE=2 SV=1 Length = 346
Score = 57.0 bits (136), Expect = 5e-07 Identities = 27/72 (37%), Positives = 45/72 (62%) Frame = +1
Query: 142 DTPTPSG*RPSLVPRIGKSMVPIQTDVIFVTPSGEELNSRAQLPLFLKSNKGSPSISEFI 321 + P P+ + P+ ++ P +T+++FV P+GEE++SR QL +LK++ G+P ISEF Sbjct: 11 ELPAPASWKKLFYPK--RAGTPRKTEIVFVAPTGEEISSRKQLEQYLKAHPGNPVISEFE 68
Query: 322 WIVDGISHRSTR 357 W RS+R Sbjct: 69 WTTGETPRRSSR 80
>tr|A9NV84|A9NV84_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 324
Score = 55.1 bits (131), Expect = 2e-06 Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 2/75 (2%) Frame = +1
Query: 139 DDTPTPSG*RPSLVPRIGKSMVPIQTDVIFVTPSGEELNSRAQLPLFLKSNKGSPSISEF 318 ++ P P+G + L+P+ G + P + +V+FV P+GEE + L LK+N G PSISEF Sbjct: 23 EELPAPAGWKKKLLPKKGGT--PKKYEVVFVAPTGEEFKGKKPLERHLKANPGGPSISEF 80
Query: 319 IWIVDGI--SHRSTR 357 W I + RS+R Sbjct: 81 DWSTGEITPTRRSSR 95
>tr|Q1EMS1|Q1EMS1_PLAMJ Putative DNA-binding protein (Fragment) OS=Plantago major GN=pdb1 PE=2 SV=1 Length = 266
Score = 53.9 bits (128), Expect = 4e-06 Identities = 24/51 (47%), Positives = 34/51 (66%) Frame = +1
Query: 205 PIQTDVIFVTPSGEELNSRAQLPLFLKSNKGSPSISEFIWIVDGISHRSTR 357 P++ +VIFV PSGEE+++R QL +LK+N G P++ EF W RS R Sbjct: 1 PMKNEVIFVAPSGEEISNRKQLQQYLKANPGGPALKEFDWGTGETPRRSAR 51
>tr|B7FJB8|B7FJB8_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 355
Score = 53.9 bits (128), Expect = 4e-06 Identities = 28/72 (38%), Positives = 43/72 (59%) Frame = +1
Query: 142 DTPTPSG*RPSLVPRIGKSMVPIQTDVIFVTPSGEELNSRAQLPLFLKSNKGSPSISEFI 321 + P PSG P+ KS P + +++F +P+GEE+ ++ QL +LK+N G P+ISEF Sbjct: 27 ELPAPSGWTKKFFPK--KSGTPKKNEIVFTSPTGEEIRTKRQLEKYLKTN-GGPNISEFD 83
Query: 322 WIVDGISHRSTR 357 W RS+R Sbjct: 84 WGTGETPRRSSR 95
>tr|Q5I204|Q5I204_MAIZE Brain acid soluble protein 1 OS=Zea mays PE=2 SV=1 Length = 364
Score = 53.5 bits (127), Expect = 6e-06 Identities = 32/84 (38%), Positives = 43/84 (51%) Frame = +1
Query: 106 EEDLAFAAAYEDDTPTPSG*RPSLVPRIGKSMVPIQTDVIFVTPSGEELNSRAQLPLFLK 285 EE AA + P PSG + P G +VIFV+P+GEE+ S+ QL +LK Sbjct: 13 EETPEKKAASTTELPAPSGWTKKVAPTRGGRF-----EVIFVSPTGEEVKSKRQLTQYLK 67
Query: 286 SNKGSPSISEFIWIVDGISHRSTR 357 ++ G P+ SEF W RS R Sbjct: 68 AHPGGPASSEFDWGTSDTPRRSAR 91
|