DK952163 |
Clone id |
TST38A01NGRL0013_F18 |
Library |
TST38 |
Length |
544 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0013_F18. 5' end sequence. |
Accession |
DK952163 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL1313Contig1 |
Sequence |
GGGTTTTGCGGAAATTTCGTGTTCGGCTGTTCTGGACAGGGACTTCCTCATTAGCGGCCT TCTGTAGCTCGCTATGCCGAAGTCCAAGCGCAACAAGCTAGTGACATTGTCTAAAACCAA AAAGAAAGGGAGGGAGAGCAAGGAATCATTAGTGAAGACTGTAAGGGAATGTCTTGAAGA GTACTCGTCATTGTACATCTTCGCATTTGAGAATATGCGGAATACAAAGTTCAAAGAGTT CCGTGACAGCCTTAAAAGTAGCAGCAGATTTTTTCTCGGCTCCAACAAAGTCTTGCAATT AGCTCTTGGAAGGACAACAGCAGAGGAAGTTAAGGATGACCTCCATAAAGCCAGTGAGAT GCTACATGGAGAGTGTGGTCTTTTTTTGACAAATTTGCCTAAAGAAGAGGTTGAAAGAAT CTTTGAGGAGTTTGAAGAGCATGATTTTGGGAAGACTGGAAGTCTTGCTACAGAGACGGT TGAATTGACAGAGGGGCCTTTGGAACAGTTTAGTCATGACATGGAACCTTTTTTGAGGAA GCAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
A4FV84 |
Definition |
sp|A4FV84|MRT4_BOVIN mRNA turnover protein 4 homolog OS=Bos taurus |
Align length |
156 |
Score (bit) |
147.0 |
E-value |
3.0e-35 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9P0E2 |
Definition |
tr|A9P0E2|A9P0E2_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
157 |
Score (bit) |
237.0 |
E-value |
3.0e-61 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK952163|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0013_F18, 5' (544 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9P0E2|A9P0E2_PICSI Putative uncharacterized protein OS=Picea... 237 3e-61 tr|A9U247|A9U247_PHYPA Predicted protein OS=Physcomitrella paten... 232 8e-60 tr|A9SYQ4|A9SYQ4_PHYPA Predicted protein OS=Physcomitrella paten... 232 8e-60 tr|Q3HVP9|Q3HVP9_SOLTU Putative uncharacterized protein OS=Solan... 210 3e-53 tr|A9PEW5|A9PEW5_POPTR Putative uncharacterized protein OS=Popul... 209 8e-53 tr|A7PYW1|A7PYW1_VITVI Chromosome chr12 scaffold_38, whole genom... 207 3e-52 tr|A2Q489|A2Q489_MEDTR Ribosomal protein L10 OS=Medicago truncat... 199 6e-50 tr|B7FJL4|B7FJL4_MEDTR Putative uncharacterized protein OS=Medic... 198 1e-49 tr|Q94AK8|Q94AK8_ARATH Putative uncharacterized protein At1g2526... 189 6e-47 tr|B8BNS8|B8BNS8_ORYSI Putative uncharacterized protein OS=Oryza... 185 1e-45 tr|Q2RBN3|Q2RBN3_ORYSJ Os11g0105400 protein OS=Oryza sativa subs... 184 2e-45 tr|A2ZH94|A2ZH94_ORYSI Putative uncharacterized protein OS=Oryza... 184 2e-45 tr|Q9FRH5|Q9FRH5_ARATH Putative uncharacterized protein F4F7.35 ... 179 9e-44 tr|B4FT06|B4FT06_MAIZE Putative uncharacterized protein OS=Zea m... 179 9e-44 tr|B6T5L3|B6T5L3_MAIZE mRNA turnover protein 4 OS=Zea mays PE=2 ... 176 6e-43 tr|Q2QYV8|Q2QYV8_ORYSJ Os12g0105200 protein OS=Oryza sativa subs... 171 2e-41 tr|Q4KTI9|Q4KTI9_SUBDO PO-like OS=Suberites domuncula PE=2 SV=1 151 2e-35 tr|B6PP82|B6PP82_BRAFL Putative uncharacterized protein OS=Branc... 149 9e-35 tr|A7T1P1|A7T1P1_NEMVE Predicted protein OS=Nematostella vectens... 148 2e-34 tr|A2AMV1|A2AMV1_MOUSE MRT4, mRNA turnover 4, homolog (S. cerevi... 147 5e-34 tr|A2AMU9|A2AMU9_MOUSE MRT4, mRNA turnover 4, homolog (S. cerevi... 147 5e-34 tr|B5X718|B5X718_SALSA mRNA turnover protein 4 homolog OS=Salmo ... 146 8e-34 tr|A8XH03|A8XH03_CAEBR Putative uncharacterized protein OS=Caeno... 146 8e-34 tr|B3KNB3|B3KNB3_HUMAN cDNA FLJ14165 fis, clone NT2RP1000746, hi... 145 1e-33 tr|B5DF25|B5DF25_RAT Mrto4 protein (Fragment) OS=Rattus norvegic... 145 2e-33 tr|Q6DEP1|Q6DEP1_XENTR MGC89995 protein (Novel protein) OS=Xenop... 144 4e-33 tr|B5XC66|B5XC66_SALSA mRNA turnover protein 4 homolog OS=Salmo ... 143 5e-33 tr|Q19302|Q19302_CAEEL Putative uncharacterized protein OS=Caeno... 143 5e-33 tr|Q4RX35|Q4RX35_TETNG Chromosome 11 SCAF14979, whole genome sho... 142 9e-33 tr|Q568C9|Q568C9_DANRE Zgc:110388 OS=Danio rerio GN=zgc:110388 P... 142 1e-32
>tr|A9P0E2|A9P0E2_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 229
Score = 237 bits (605), Expect = 3e-61 Identities = 115/157 (73%), Positives = 130/157 (82%) Frame = +2
Query: 74 MPKSKRNKLVTLSKTKKKGRESKESLVKTVRECLEEYSSLYIFAFENMRNTKFKEFRDSL 253 MPKSKRNK+VTLSKTKKKGRE KES+V VR+ LE+Y S+Y+F+FENMRN KFK RD L Sbjct: 1 MPKSKRNKMVTLSKTKKKGREHKESIVNQVRQALEDYISVYVFSFENMRNVKFKGLRDRL 60
Query: 254 KSSSRFFLGSNKVLQLALGRTTAEEVKDDLHKASEMLHGECGLFLTNLPKXXXXXXXXXX 433 K SSRFFLGSNKVLQ++LGRT A+EVKD +HKASEMLHG+CGLF TNLPK Sbjct: 61 KGSSRFFLGSNKVLQISLGRTAADEVKDGIHKASEMLHGDCGLFFTNLPKEEVMRVFETF 120
Query: 434 XXHDFGKTGSLATETVELTEGPLEQFSHDMEPFLRKQ 544 HDF +TGSLATET+EL EGPLEQF+HDMEPFLRKQ Sbjct: 121 EEHDFARTGSLATETIELKEGPLEQFTHDMEPFLRKQ 157
>tr|A9U247|A9U247_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_227616 PE=4 SV=1 Length = 232
Score = 232 bits (592), Expect = 8e-60 Identities = 113/157 (71%), Positives = 132/157 (84%) Frame = +2
Query: 74 MPKSKRNKLVTLSKTKKKGRESKESLVKTVRECLEEYSSLYIFAFENMRNTKFKEFRDSL 253 MPKSKRNKLVTLSKTKKKG+E KESLVK+VR+CL+EY+SLYIF+F NMRNTKFKEF++ L Sbjct: 1 MPKSKRNKLVTLSKTKKKGKEQKESLVKSVRDCLDEYASLYIFSFVNMRNTKFKEFKEKL 60
Query: 254 KSSSRFFLGSNKVLQLALGRTTAEEVKDDLHKASEMLHGECGLFLTNLPKXXXXXXXXXX 433 K+SSRFFLG NKVLQ+ALG+T AEE K+ LH+ASE +HG CGLF TNLPK Sbjct: 61 KASSRFFLGGNKVLQIALGKTAAEEHKEGLHQASEQIHGFCGLFFTNLPKFEVLREFREF 120
Query: 434 XXHDFGKTGSLATETVELTEGPLEQFSHDMEPFLRKQ 544 DF +TGS+ATETV+L EGPL+QF+HDMEPFLRKQ Sbjct: 121 EELDFARTGSIATETVDLKEGPLDQFTHDMEPFLRKQ 157
>tr|A9SYQ4|A9SYQ4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_217191 PE=4 SV=1 Length = 232
Score = 232 bits (592), Expect = 8e-60 Identities = 114/157 (72%), Positives = 132/157 (84%) Frame = +2
Query: 74 MPKSKRNKLVTLSKTKKKGRESKESLVKTVRECLEEYSSLYIFAFENMRNTKFKEFRDSL 253 MPKSKRNKLVTLSKTKKK +E KESLVK+VR+CL++Y+SLYIF+FENMRN KFKEF++ L Sbjct: 1 MPKSKRNKLVTLSKTKKKDKEQKESLVKSVRDCLDQYTSLYIFSFENMRNIKFKEFKEKL 60
Query: 254 KSSSRFFLGSNKVLQLALGRTTAEEVKDDLHKASEMLHGECGLFLTNLPKXXXXXXXXXX 433 KSSSRFFLG NKVLQ+ALG++ AEE K+ LH+ASE++HG CGLF TNLPK Sbjct: 61 KSSSRFFLGGNKVLQIALGKSEAEEQKEGLHQASELIHGFCGLFFTNLPKSEVIRGFQEF 120
Query: 434 XXHDFGKTGSLATETVELTEGPLEQFSHDMEPFLRKQ 544 DF +TGS+ATETVEL EGPLEQFSHDMEPFLRKQ Sbjct: 121 EELDFARTGSVATETVELQEGPLEQFSHDMEPFLRKQ 157
>tr|Q3HVP9|Q3HVP9_SOLTU Putative uncharacterized protein OS=Solanum tuberosum PE=2 SV=1 Length = 229
Score = 210 bits (535), Expect = 3e-53 Identities = 100/157 (63%), Positives = 125/157 (79%) Frame = +2
Query: 74 MPKSKRNKLVTLSKTKKKGRESKESLVKTVRECLEEYSSLYIFAFENMRNTKFKEFRDSL 253 MPKSKRN+ VTLSKTKKKG+E KE++V ++REC E+YSS Y+F+FENMRN KFKEFRD L Sbjct: 1 MPKSKRNRAVTLSKTKKKGKEHKENIVNSIRECAEKYSSAYVFSFENMRNLKFKEFRDQL 60
Query: 254 KSSSRFFLGSNKVLQLALGRTTAEEVKDDLHKASEMLHGECGLFLTNLPKXXXXXXXXXX 433 KSSSRFFLGSNKV+Q+ALGR+ ++E++ LHK S+++ G+ GL TNL K Sbjct: 61 KSSSRFFLGSNKVMQVALGRSDSDEIRPGLHKISKLVRGDSGLCFTNLSKEEVQRLFNEY 120
Query: 434 XXHDFGKTGSLATETVELTEGPLEQFSHDMEPFLRKQ 544 HDF +TG+ ATE VEL EGPL+QF+H+MEPFLRKQ Sbjct: 121 EEHDFARTGTTATEKVELQEGPLDQFTHEMEPFLRKQ 157
>tr|A9PEW5|A9PEW5_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 229
Score = 209 bits (532), Expect = 8e-53 Identities = 99/157 (63%), Positives = 128/157 (81%) Frame = +2
Query: 74 MPKSKRNKLVTLSKTKKKGRESKESLVKTVRECLEEYSSLYIFAFENMRNTKFKEFRDSL 253 MPKSKRN+ VTLSKTKKKGRE KES+V ++R+ +E+Y+S+Y+F+FENMRN KFKEFR+ Sbjct: 1 MPKSKRNRPVTLSKTKKKGREHKESIVNSIRDAVEKYNSIYVFSFENMRNLKFKEFREQH 60
Query: 254 KSSSRFFLGSNKVLQLALGRTTAEEVKDDLHKASEMLHGECGLFLTNLPKXXXXXXXXXX 433 K +SRFFLGSNKV+Q++LGR+ A+E++ LHK S++L G+ GLFLTNLP+ Sbjct: 61 KLTSRFFLGSNKVMQVSLGRSAADEIRPGLHKVSKLLCGDAGLFLTNLPREEVERLFNEY 120
Query: 434 XXHDFGKTGSLATETVELTEGPLEQFSHDMEPFLRKQ 544 +DF +TG+ ATETVEL EGPLEQF+H+MEPFLRKQ Sbjct: 121 EEYDFARTGTTATETVELKEGPLEQFTHEMEPFLRKQ 157
>tr|A7PYW1|A7PYW1_VITVI Chromosome chr12 scaffold_38, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00026600001 PE=3 SV=1 Length = 229
Score = 207 bits (527), Expect = 3e-52 Identities = 98/157 (62%), Positives = 125/157 (79%) Frame = +2
Query: 74 MPKSKRNKLVTLSKTKKKGRESKESLVKTVRECLEEYSSLYIFAFENMRNTKFKEFRDSL 253 MPKSKR++ VTLSKTKKKGR KES+V ++R+ +E YSS+Y+F+FENMRN KFKEFR+ L Sbjct: 1 MPKSKRDRPVTLSKTKKKGRGHKESIVNSIRQAVENYSSIYVFSFENMRNLKFKEFREKL 60
Query: 254 KSSSRFFLGSNKVLQLALGRTTAEEVKDDLHKASEMLHGECGLFLTNLPKXXXXXXXXXX 433 KS+SRFFLGSNKV+Q+A+GR+ A+E++ L K S++LHG+ GLF TNLPK Sbjct: 61 KSTSRFFLGSNKVMQIAIGRSVADEIRPGLRKVSKLLHGDTGLFFTNLPKEEVQRLFNEY 120
Query: 434 XXHDFGKTGSLATETVELTEGPLEQFSHDMEPFLRKQ 544 +DF +TGS A E VEL EGPL+QF+H+MEPFLRKQ Sbjct: 121 EEYDFARTGSTAVEKVELKEGPLDQFTHEMEPFLRKQ 157
>tr|A2Q489|A2Q489_MEDTR Ribosomal protein L10 OS=Medicago truncatula GN=MtrDRAFT_AC157375g4v1 PE=3 SV=1 Length = 228
Score = 199 bits (507), Expect = 6e-50 Identities = 94/157 (59%), Positives = 123/157 (78%) Frame = +2
Query: 74 MPKSKRNKLVTLSKTKKKGRESKESLVKTVRECLEEYSSLYIFAFENMRNTKFKEFRDSL 253 MPKSKRNK VTLSKT KKGR KE ++ +R+ E+YSS+Y+F F+NMRN+K KEFR+ L Sbjct: 1 MPKSKRNKQVTLSKTTKKGRGHKELIINGIRDAAEKYSSIYVFNFQNMRNSKLKEFREQL 60
Query: 254 KSSSRFFLGSNKVLQLALGRTTAEEVKDDLHKASEMLHGECGLFLTNLPKXXXXXXXXXX 433 +SSS+FFLGSNKV+Q+A+GR++++E+K +LHK S++L G+ G+ TNL K Sbjct: 61 QSSSKFFLGSNKVMQVAIGRSSSDEIKPNLHKVSKLLRGDAGMIFTNLSKEEVERLFNEF 120
Query: 434 XXHDFGKTGSLATETVELTEGPLEQFSHDMEPFLRKQ 544 +DF +TGS+ATE VEL EGPLEQF+HDMEPFLRKQ Sbjct: 121 EGYDFARTGSIATEKVELKEGPLEQFTHDMEPFLRKQ 157
>tr|B7FJL4|B7FJL4_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 228
Score = 198 bits (504), Expect = 1e-49 Identities = 93/157 (59%), Positives = 123/157 (78%) Frame = +2
Query: 74 MPKSKRNKLVTLSKTKKKGRESKESLVKTVRECLEEYSSLYIFAFENMRNTKFKEFRDSL 253 MPKSKRNK VTLSKT KKGR KE ++ +R+ E+YSS+Y+F F+NMRN+K KEFR+ L Sbjct: 1 MPKSKRNKQVTLSKTTKKGRGHKELIINGIRDAAEKYSSIYVFNFQNMRNSKLKEFREQL 60
Query: 254 KSSSRFFLGSNKVLQLALGRTTAEEVKDDLHKASEMLHGECGLFLTNLPKXXXXXXXXXX 433 +SSS+FFLGSNKV+Q+A+GR++++E+K +LHK S++L G+ G+ TNL K Sbjct: 61 QSSSKFFLGSNKVMQVAIGRSSSDEIKPNLHKVSKLLRGDAGMIFTNLSKEEVERLFNEF 120
Query: 434 XXHDFGKTGSLATETVELTEGPLEQFSHDMEPFLRKQ 544 +DF +TGS+ATE VEL EGPLEQF+HDMEPFLR+Q Sbjct: 121 EGYDFARTGSIATEKVELKEGPLEQFTHDMEPFLRRQ 157
>tr|Q94AK8|Q94AK8_ARATH Putative uncharacterized protein At1g25260 (Putative uncharacterized protein) OS=Arabidopsis thaliana GN=At1g25260 PE=2 SV=1 Length = 235
Score = 189 bits (481), Expect = 6e-47 Identities = 89/156 (57%), Positives = 119/156 (76%) Frame = +2
Query: 74 MPKSKRNKLVTLSKTKKKGRESKESLVKTVRECLEEYSSLYIFAFENMRNTKFKEFRDSL 253 MPKSKR++ VTLSKTKKKGRE KE +V +RE +E+YSS+Y+F+FENMRN KFKEFR Sbjct: 1 MPKSKRDRPVTLSKTKKKGREHKECIVNGIREAVEKYSSVYVFSFENMRNIKFKEFRQQF 60
Query: 254 KSSSRFFLGSNKVLQLALGRTTAEEVKDDLHKASEMLHGECGLFLTNLPKXXXXXXXXXX 433 + + +FFLGSNKV+Q+ALGR+ +E++ ++K S++L G+ GL +T++PK Sbjct: 61 RHNGKFFLGSNKVMQVALGRSAEDELRSGIYKVSKLLRGDTGLLVTDMPKEEVESLFNAY 120
Query: 434 XXHDFGKTGSLATETVELTEGPLEQFSHDMEPFLRK 541 DF +TGS+A ETVEL EGPLEQF+H+MEP LRK Sbjct: 121 EDSDFSRTGSIAVETVELKEGPLEQFTHEMEPLLRK 156
>tr|B8BNS8|B8BNS8_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_37142 PE=4 SV=1 Length = 247
Score = 185 bits (470), Expect = 1e-45 Identities = 91/158 (57%), Positives = 115/158 (72%), Gaps = 1/158 (0%) Frame = +2
Query: 74 MPKSKRNKLVTLSKTKKK-GRESKESLVKTVRECLEEYSSLYIFAFENMRNTKFKEFRDS 250 MPKSKRN+ VTLSKTKKK G E K +V +++ +E Y++ Y+F ++NMRN K K+ R+ Sbjct: 1 MPKSKRNRPVTLSKTKKKPGLERKGKVVTDIKDAVEHYANAYVFTYDNMRNQKLKDLREQ 60
Query: 251 LKSSSRFFLGSNKVLQLALGRTTAEEVKDDLHKASEMLHGECGLFLTNLPKXXXXXXXXX 430 LKSSSR FL KV+Q+ALGR+ A+E K LHK S+ L G+ GLF TNLP+ Sbjct: 61 LKSSSRIFLAGKKVMQIALGRSPADEAKTGLHKLSKFLQGDTGLFFTNLPRDDVERLFRE 120
Query: 431 XXXHDFGKTGSLATETVELTEGPLEQFSHDMEPFLRKQ 544 HDF +TGS+ATETVEL EGPLEQF+H+MEPFLRKQ Sbjct: 121 FEEHDFARTGSIATETVELKEGPLEQFTHEMEPFLRKQ 158
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