DK952132
Clone id TST38A01NGRL0013_E09
Library
Length 586
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0013_E09. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence
TAAAGTTACAAGCTCCTTTTGGTTCAGCTGAATCCATGCGGCACCTTGCAACCCTGGTCC
TTTTGCAGCAGGGAGAAAGGCAGGCAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAA
CATTTCCTTCATGAAGCGTCAAGTTTTGCATAGTGTTTACGTTTTGATTGGAGATGTGGA
CTCTGGTCTTTTGCCATGACATTTACTTTTTGAAAAACAGCGCCTCTTTTGAGGCAAGGA
CTGAAGCATGGTGATGGCCACGTGCAGTTCTTCCTACACTGCCAGTGTGGGCATGTTGGC
TTCAAAAATATCTGGATCCTCAGGGATGGCTTATTGCTCTCTATCAAAGTTACCAACATA
TGCAAGTTCACATCCAAGGTCATCAACCGGGATTAGAGAAGTCTTATCCCCTTCTTCTCG
CTGGTTTTCGACTGGTTTTCTTCGTCTCAAAATGCTCTCCTTGGAACTTGTGCCTCGAAA
AGGACAATGGACTTCTATAAGGTCTATGGCACAGGAGGTTGCAACACAGGCCAAGGTAAC
AACAAAATGTTTTTTCGACATTGAAATCGGAGGGAGTCCTGCTGGA
■■Homology search results ■■ -
sp_hit_id P34791
Definition sp|P34791|CP20C_ARATH Peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic OS=Arabidopsis thaliana
Align length 52
Score (bit) 36.6
E-value 0.095
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK952132|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0013_E09, 5'
(586 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P34791|CP20C_ARATH Peptidyl-prolyl cis-trans isomerase CYP20-... 37 0.095
sp|Q41651|CYPB_VICFA Peptidyl-prolyl cis-trans isomerase, chloro... 35 0.21
sp|Q8D2F5|TILS_WIGBR tRNA(Ile)-lysidine synthase OS=Wigglesworth... 34 0.61
sp|P38419|LOXC1_ORYSJ Lipoxygenase 7, chloroplastic OS=Oryza sat... 32 1.8
sp|Q8R151|ZNFX1_MOUSE NFX1-type zinc finger-containing protein 1... 31 3.9
sp|Q9P2E3|ZNFX1_HUMAN NFX1-type zinc finger-containing protein 1... 31 3.9
sp|P14088|PPIA_ECHGR Peptidyl-prolyl cis-trans isomerase OS=Echi... 31 4.0
sp|Q8VC74|COX18_MOUSE Mitochondrial inner membrane protein COX18... 31 5.2
sp|P07570|VPRT_MPMV Protease OS=Mason-Pfizer monkey virus GN=pro... 30 6.8
sp|P52013|CYP5_CAEEL Peptidyl-prolyl cis-trans isomerase 5 OS=Ca... 30 6.8
sp|P52014|CYP6_CAEEL Peptidyl-prolyl cis-trans isomerase 6 OS=Ca... 30 8.9

>sp|P34791|CP20C_ARATH Peptidyl-prolyl cis-trans isomerase CYP20-3,
chloroplastic OS=Arabidopsis thaliana GN=CYP20-3 PE=1
SV=1
Length = 260

Score = 36.6 bits (83), Expect = 0.095
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Frame = +2

Query: 446 LKMLSLELVPRKGQWTS-IRSMAQE----VATQAKVTTKCFFDIEIGGSPAG 586
+K S K Q T+ ++SMA E + QAKVT K +FD+EIGG AG
Sbjct: 58 IKQFSGVYATTKHQRTACVKSMAAEEEEVIEPQAKVTNKVYFDVEIGGEVAG 109


>sp|Q41651|CYPB_VICFA Peptidyl-prolyl cis-trans isomerase,
chloroplastic OS=Vicia faba PE=1 SV=1
Length = 248

Score = 35.4 bits (80), Expect = 0.21
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = +2

Query: 527 QAKVTTKCFFDIEIGGSPAG 586
QAKVT+K FFDIEIGG AG
Sbjct: 77 QAKVTSKIFFDIEIGGESAG 96


>sp|Q8D2F5|TILS_WIGBR tRNA(Ile)-lysidine synthase OS=Wigglesworthia
glossinidia brevipalpis GN=tilS PE=3 SV=1
Length = 400

Score = 33.9 bits (76), Expect = 0.61
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 6/100 (6%)
Frame = -3

Query: 422 SEKKGIRLL*SRLMTLDVNLHMLVTLIESNKPS----LRIQIFLKPTCPHWQCRKNCTWP 255
S KK L S + V LHM+ I+ K + +I F H C+++ W
Sbjct: 10 SYKKSYVLAFSGGLDSTVLLHMISLYIKKIKNNNNFFKKIFKFRAVYINHNICKESKYWS 69

Query: 254 SPCFSPCLKRGAVFQKVNVMAKDQSPHLQS--KRKHYAKL 141
+ C CLK F+ +N+ D S ++S +R+ Y L
Sbjct: 70 NHCHDQCLKYKVFFKSINIFISDFSEGIESSARRERYKAL 109


>sp|P38419|LOXC1_ORYSJ Lipoxygenase 7, chloroplastic OS=Oryza sativa
subsp. japonica GN=CM-LOX1 PE=2 SV=2
Length = 924

Score = 32.3 bits (72), Expect = 1.8
Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 4/122 (3%)
Frame = +2

Query: 233 GKD*SMVMATC-SSSYTASVGMLASKISGSSGMAYCSLSKLPTYASSHPRSSTGIREVLS 409
G+ S V+ C SSS TAS G +S ++ ++ + +++ + S IR+++
Sbjct: 52 GQGSSRVVVVCASSSATASRGDSSSDMAAAAAVRVKAVATIKVTVGELINRSIDIRDLIG 111

Query: 410 PSSRWFSTGFLRLKMLSLELVPRKG-QWTSIRSMAQEV--ATQAKVTTKCFFDIEIGGSP 580
S L L+++S EL + G + ++RS A V + VT + FD+ G P
Sbjct: 112 RS--------LSLELVSSELDAKTGKEKATVRSYAHNVDDDDHSVVTYEADFDVPSGFGP 163

Query: 581 AG 586
G
Sbjct: 164 IG 165


>sp|Q8R151|ZNFX1_MOUSE NFX1-type zinc finger-containing protein 1
OS=Mus musculus GN=Znfx1 PE=2 SV=2
Length = 1909

Score = 31.2 bits (69), Expect = 3.9
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Frame = -3

Query: 293 CPHWQCRKNCTWP---SPCFSPCLK 228
C H+QC K C+ P PC+ PC K
Sbjct: 1510 CQHYQCTKLCSEPCNRPPCYVPCTK 1534


>sp|Q9P2E3|ZNFX1_HUMAN NFX1-type zinc finger-containing protein 1
OS=Homo sapiens GN=ZNFX1 PE=1 SV=2
Length = 1918

Score = 31.2 bits (69), Expect = 3.9
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Frame = -3

Query: 293 CPHWQCRKNCTWP---SPCFSPCLK 228
C H+QC K C+ P PC+ PC K
Sbjct: 1518 CQHYQCTKLCSEPCNRPPCYVPCTK 1542


>sp|P14088|PPIA_ECHGR Peptidyl-prolyl cis-trans isomerase
OS=Echinococcus granulosus GN=CYP-1 PE=2 SV=2
Length = 162

Score = 31.2 bits (69), Expect = 4.0
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +2

Query: 545 KCFFDIEIGGSPAG 586
KCFFDI IGG PAG
Sbjct: 4 KCFFDISIGGKPAG 17


>sp|Q8VC74|COX18_MOUSE Mitochondrial inner membrane protein COX18
OS=Mus musculus GN=Cox18 PE=2 SV=4
Length = 331

Score = 30.8 bits (68), Expect = 5.2
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = +3

Query: 255 WPRAVLPTLPVWACWLQKYLDPQGWLIALYQS 350
W A LP LPVWA P GW AL S
Sbjct: 27 WSSARLPALPVWAAASVSAASPGGWYEALAAS 58


>sp|P07570|VPRT_MPMV Protease OS=Mason-Pfizer monkey virus GN=pro
PE=1 SV=1
Length = 314

Score = 30.4 bits (67), Expect = 6.8
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = +2

Query: 263 CSSSYTASVGMLASKISGSSGMAYCSLSKLPTYASSHPRS-STGIREVLSPSSRWFSTGF 439
CSS + L GS+G+ CS S P++ STGI L P++ G
Sbjct: 30 CSSQQKQPISKLTRATPGSAGLDLCSTSHTVLTPEMGPQALSTGIYGPLPPNTFGLILGR 89

Query: 440 LRLKMLSLELVP 475
+ M L++ P
Sbjct: 90 SSITMKGLQVYP 101


>sp|P52013|CYP5_CAEEL Peptidyl-prolyl cis-trans isomerase 5
OS=Caenorhabditis elegans GN=cyn-5 PE=1 SV=2
Length = 204

Score = 30.4 bits (67), Expect = 6.8
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +2

Query: 494 SIRSMAQ-EVATQAKVTTKCFFDIEIGGSPAG 586
++ ++AQ + A KVT K +FD+EIGG P G
Sbjct: 12 AVGALAQGDDAKGPKVTDKVYFDMEIGGKPIG 43


tr_hit_id A9NLD0
Definition tr|A9NLD0|A9NLD0_PICSI Peptidyl-prolyl cis-trans isomerase OS=Picea sitchensis
Align length 103
Score (bit) 62.8
E-value 1.0e-08
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK952132|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0013_E09, 5'
(586 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9NLD0|A9NLD0_PICSI Peptidyl-prolyl cis-trans isomerase OS=Pi... 63 1e-08
tr|A7Q0X2|A7Q0X2_VITVI Peptidyl-prolyl cis-trans isomerase OS=Vi... 50 1e-04
tr|A5B9P8|A5B9P8_VITVI Peptidyl-prolyl cis-trans isomerase OS=Vi... 50 1e-04
tr|B8ACM2|B8ACM2_ORYSI Putative uncharacterized protein OS=Oryza... 46 0.001
tr|B6TQ97|B6TQ97_MAIZE Peptidyl-prolyl cis-trans isomerase OS=Ze... 44 0.009
tr|B4FRI7|B4FRI7_MAIZE Putative uncharacterized protein OS=Zea m... 44 0.009
tr|Q9AQU0|Q9AQU0_ORYSJ Peptidyl-prolyl cis-trans isomerase OS=Or... 40 0.074
tr|Q0JNJ3|Q0JNJ3_ORYSJ Peptidyl-prolyl cis-trans isomerase OS=Or... 40 0.074
tr|A2ZRX7|A2ZRX7_ORYSJ Peptidyl-prolyl cis-trans isomerase OS=Or... 40 0.074
tr|A9SXM6|A9SXM6_PHYPA Peptidyl-prolyl cis-trans isomerase OS=Ph... 39 0.17
tr|A8XK42|A8XK42_CAEBR CBR-HYL-2 protein OS=Caenorhabditis brigg... 39 0.28
tr|B6VB54|B6VB54_IPOBA Peptidylprolyl isomerase OS=Ipomoea batat... 39 0.28
tr|A9TAX1|A9TAX1_PHYPA Peptidyl-prolyl cis-trans isomerase (Frag... 38 0.48
tr|A9SIJ8|A9SIJ8_PHYPA Peptidyl-prolyl cis-trans isomerase OS=Ph... 38 0.48
tr|Q5Z9I0|Q5Z9I0_ORYSJ Peptidyl-prolyl cis-trans isomerase OS=Or... 36 1.8
tr|A2YGV1|A2YGV1_ORYSI Peptidyl-prolyl cis-trans isomerase OS=Or... 36 1.8
tr|A8XWF8|A8XWF8_CAEBR Peptidyl-prolyl cis-trans isomerase OS=Ca... 35 3.1
tr|Q324E8|Q324E8_SHIBS Putative IS1 encoded protein OS=Shigella ... 34 7.0
tr|A8J282|A8J282_CHLRE Peptidyl-prolyl cis-trans isomerase OS=Ch... 34 7.0
tr|B2ZF19|B2ZF19_BOMMO Abdominal A OS=Bombyx mori GN=abd-A PE=2 ... 33 9.1

>tr|A9NLD0|A9NLD0_PICSI Peptidyl-prolyl cis-trans isomerase OS=Picea
sitchensis PE=2 SV=1
Length = 261

Score = 62.8 bits (151), Expect = 1e-08
Identities = 39/103 (37%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Frame = +2

Query: 287 VGMLASKISGSSGMAYCSLS---KLPTYASSHPRSSTGIREVLSPSSRWFSTGFLRLKML 457
+G A + G ++ C S K P + RSS ++ S+ F +GF K +
Sbjct: 17 LGKTALHVLGPQVVSQCRQSVMFKCPPHTLKTMRSSQNLQ------SKNFYSGFTPFKSV 70

Query: 458 SLELVPRKGQWTSIRSMAQEVATQAKVTTKCFFDIEIGGSPAG 586
+ R Q S R+M+Q+ A Q+KVT+KCFFDIEIGG+PAG
Sbjct: 71 FISTSKRSWQTGSARAMSQDAAFQSKVTSKCFFDIEIGGAPAG 113


>tr|A7Q0X2|A7Q0X2_VITVI Peptidyl-prolyl cis-trans isomerase OS=Vitis
vinifera GN=GSVIVT00028214001 PE=3 SV=1
Length = 157

Score = 49.7 bits (117), Expect = 1e-04
Identities = 21/30 (70%), Positives = 24/30 (80%)
Frame = +2

Query: 497 IRSMAQEVATQAKVTTKCFFDIEIGGSPAG 586
+ SMA EV QAKVTTKCFFD++IGG P G
Sbjct: 73 VNSMANEVELQAKVTTKCFFDVDIGGEPVG 102


>tr|A5B9P8|A5B9P8_VITVI Peptidyl-prolyl cis-trans isomerase OS=Vitis
vinifera GN=VITISV_015631 PE=3 SV=1
Length = 253

Score = 49.7 bits (117), Expect = 1e-04
Identities = 21/30 (70%), Positives = 24/30 (80%)
Frame = +2

Query: 497 IRSMAQEVATQAKVTTKCFFDIEIGGSPAG 586
+ SMA EV QAKVTTKCFFD++IGG P G
Sbjct: 73 VNSMANEVELQAKVTTKCFFDVDIGGEPVG 102


>tr|B8ACM2|B8ACM2_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_01440 PE=4 SV=1
Length = 238

Score = 46.2 bits (108), Expect = 0.001
Identities = 36/89 (40%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Frame = +2

Query: 329 AYCSLSKLPTYASSHPRSSTGIREVLSPSSRWFSTGF-LRLKMLSLELVPRKGQWTSIRS 505
A CS S L H S G +PS G LRL++ S G +R+
Sbjct: 6 AVCSPSALAP--PRHRLLSLGCARTAAPSG-----GLPLRLRLRSSPAPRGHGADLVVRA 58

Query: 506 MAQE--VATQAKVTTKCFFDIEIGGSPAG 586
A E V QAKVT+KCFFD+E+GG PAG
Sbjct: 59 AAAEGAVELQAKVTSKCFFDVEVGGEPAG 87


>tr|B6TQ97|B6TQ97_MAIZE Peptidyl-prolyl cis-trans isomerase OS=Zea
mays PE=2 SV=1
Length = 242

Score = 43.5 bits (101), Expect = 0.009
Identities = 20/32 (62%), Positives = 25/32 (78%), Gaps = 2/32 (6%)
Frame = +2

Query: 497 IRSMAQE--VATQAKVTTKCFFDIEIGGSPAG 586
+R+ A E V QAKVT+KCFFD+E+GG PAG
Sbjct: 60 VRATAAEGAVELQAKVTSKCFFDVEVGGEPAG 91


>tr|B4FRI7|B4FRI7_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 213

Score = 43.5 bits (101), Expect = 0.009
Identities = 20/32 (62%), Positives = 25/32 (78%), Gaps = 2/32 (6%)
Frame = +2

Query: 497 IRSMAQE--VATQAKVTTKCFFDIEIGGSPAG 586
+R+ A E V QAKVT+KCFFD+E+GG PAG
Sbjct: 31 VRATAAEGAVELQAKVTSKCFFDVEVGGEPAG 62


>tr|Q9AQU0|Q9AQU0_ORYSJ Peptidyl-prolyl cis-trans isomerase OS=Oryza
sativa subsp. japonica GN=P0498A12.16 PE=3 SV=1
Length = 231

Score = 40.4 bits (93), Expect = 0.074
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +2

Query: 518 VATQAKVTTKCFFDIEIGGSPAG 586
V QAKV +KCFFD+E+GG PAG
Sbjct: 58 VELQAKVNSKCFFDVEVGGEPAG 80


>tr|Q0JNJ3|Q0JNJ3_ORYSJ Peptidyl-prolyl cis-trans isomerase OS=Oryza
sativa subsp. japonica GN=Os01g0284700 PE=3 SV=1
Length = 242

Score = 40.4 bits (93), Expect = 0.074
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +2

Query: 518 VATQAKVTTKCFFDIEIGGSPAG 586
V QAKV +KCFFD+E+GG PAG
Sbjct: 59 VELQAKVNSKCFFDVEVGGEPAG 81


>tr|A2ZRX7|A2ZRX7_ORYSJ Peptidyl-prolyl cis-trans isomerase OS=Oryza
sativa subsp. japonica GN=OsJ_001299 PE=3 SV=1
Length = 145

Score = 40.4 bits (93), Expect = 0.074
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +2

Query: 518 VATQAKVTTKCFFDIEIGGSPAG 586
V QAKV +KCFFD+E+GG PAG
Sbjct: 4 VELQAKVNSKCFFDVEVGGEPAG 26


>tr|A9SXM6|A9SXM6_PHYPA Peptidyl-prolyl cis-trans isomerase
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_107144 PE=3 SV=1
Length = 249

Score = 39.3 bits (90), Expect = 0.17
Identities = 29/75 (38%), Positives = 37/75 (49%)
Frame = +2

Query: 362 ASSHPRSSTGIREVLSPSSRWFSTGFLRLKMLSLELVPRKGQWTSIRSMAQEVATQAKVT 541
AS P S + R+ L SS F G +L+ S P Q + R+M +VT
Sbjct: 23 ASLSPVSESVQRQALGFSSILFGAGSQQLRSAS---EPTNFQRATTRAM--------QVT 71

Query: 542 TKCFFDIEIGGSPAG 586
TKC+FDI IG PAG
Sbjct: 72 TKCYFDITIGNKPAG 86