NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK952126
Clone id TST38A01NGRL0013_E03
Library
Length 588
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0013_E03. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
AAAAGGCATTGCCATTGTCTTGTCTGTCTGGCTATGGTTCTGAAGGACGCTTTTGACCGC
TATGTACAAGATCGCTTAGCTTTCAAAGTGCCACGTAGAAATTCCACTTAGCAGGGTCTG
GCAGAAATTTGAAATAGCGAGAAGAGAAGGAAGAGAGACAGAGAGAGAATGTTCGCTCCA
TTGAACTCGAGGTCTGGATGCGCAAGCTTGCGTGGGGGAAGTTCAGGAGAAGACATTTCT
TGCGCAGTTCCTACGCATGAAGTTACTAGCTGCTCGGTCTGTACCCCATGGGCTAGCCAG
CACTCGCAAATTTTTTCTCTTCGTATACACAGCAGCGAGGACAAAGCTTTTATATTGGCA
GCTCGCCCTTCCTTCTCAGATGTATCCCTGCCCGAAGAGCCTCCATTTGAGGATAACAAC
GGTGCAGCAATTATGGAAATCGGAAGTGAAAGTCTTGAGATGGGACTGAGTGGACTTGGG
GCCTCTATGGTTGGTCCCTTGGGTGGAAGTGGCCGGGCTGGCCTTTTTCGTACACCAATC
TCTGGGGGGGTTCAGAGTGCTACATCTTCTCATGGATTACCATCTCCT
■■Homology search results ■■ -
sp_hit_id Q10571
Definition sp|Q10571|MN1_HUMAN Probable tumor suppressor protein MN1 OS=Homo sapiens
Align length 128
Score (bit) 32.0
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952126|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0013_E03, 5'
         (588 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q10571|MN1_HUMAN Probable tumor suppressor protein MN1 OS=Hom...    32   2.4  
sp|P05786|K2C8_BOVIN Keratin, type II cytoskeletal 8 OS=Bos taur...    32   3.1  
sp|Q3KP44|ANR55_HUMAN Ankyrin repeat domain-containing protein 5...    32   3.1  
sp|Q9Z7N9|UHPT_CHLPN Probable hexose phosphate transport protein...    30   6.8  
sp|Q9LXM8|RLA24_ARATH 60S acidic ribosomal protein P2-4 OS=Arabi...    30   6.9  
sp|Q8DIC3|LNT_THEEB Apolipoprotein N-acyltransferase OS=Thermosy...    30   8.9  
sp|Q54BX6|HSL62_DICDI HssA/B-like protein 62 OS=Dictyostelium di...    30   9.0  
sp|P54269|CAUP_DROME Homeobox protein caupolican OS=Drosophila m...    30   9.0  

>sp|Q10571|MN1_HUMAN Probable tumor suppressor protein MN1 OS=Homo
            sapiens GN=MN1 PE=1 SV=3
          Length = 1320

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 37/128 (28%), Positives = 52/128 (40%)
 Frame = +1

Query: 205  SLRGGSSGEDISCAVPTHEVTSCSVCTPWASQHSQIFSLRIHSSEDKAFILAARPSFSDV 384
            SL GG+  +  S  V   E  S  V T +A++     S    S   +A + A+R      
Sbjct: 1027 SLDGGAKSDSSSPNVG--EFASDEVSTSYANEDEVSSS----SDNPQALVKASRSPLVTG 1080

Query: 385  SLPEEPPFEDNNGAAIMEIGSESLEMGLSGLGASMVGPLGGSGRAGLFRTPISGGVQSAT 564
            S P+ PP     G    +    +L +G+     S     GG G  G   TP    V++ T
Sbjct: 1081 S-PKLPPRGVGAGEHGPKAPPPALGLGIMSNSTSTPDSYGGGGGPGHPGTPGLEQVRTPT 1139

Query: 565  SSHGLPSP 588
            SS G P P
Sbjct: 1140 SSSGAPPP 1147


>sp|P05786|K2C8_BOVIN Keratin, type II cytoskeletal 8 OS=Bos taurus
           GN=KRT8 PE=2 SV=3
          Length = 478

 Score = 31.6 bits (70), Expect = 3.1
 Identities = 29/91 (31%), Positives = 39/91 (42%)
 Frame = +1

Query: 316 SLRIHSSEDKAFILAARPSFSDVSLPEEPPFEDNNGAAIMEIGSESLEMGLSGLGASMVG 495
           S+R+     K    A R SFS  S    P    ++ +A   +GS S   G  G G SM G
Sbjct: 2   SIRVTQKSYKVSTSAPR-SFSSRSYTSGPGSRISS-SAFSRVGSSSSFRGGLGTGMSMAG 59

Query: 496 PLGGSGRAGLFRTPISGGVQSATSSHGLPSP 588
             GG+        P  GG+ + T +  L SP
Sbjct: 60  SYGGA--------PGLGGITAVTVNQSLLSP 82


>sp|Q3KP44|ANR55_HUMAN Ankyrin repeat domain-containing protein 55
           OS=Homo sapiens GN=ANKRD55 PE=2 SV=2
          Length = 613

 Score = 31.6 bits (70), Expect = 3.1
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
 Frame = +1

Query: 265 TSCSVC--TPWASQHSQIFSLRIH--SSEDKAF--ILAARPSFSDVSLP 393
           T C +    PW S  +Q+FS ++   SS DK    +L+ RP   +VS+P
Sbjct: 483 TGCQMLLDNPWKSDSNQVFSYKVWTVSSSDKLLDRLLSVRPGHQEVSVP 531


>sp|Q9Z7N9|UHPT_CHLPN Probable hexose phosphate transport protein
           OS=Chlamydia pneumoniae GN=uhpC PE=3 SV=1
          Length = 455

 Score = 30.4 bits (67), Expect = 6.8
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 477 WGLYGWSLGWKWPGWPFSYTNLWGGSE 557
           WGL GW  GW WP      T+ +  SE
Sbjct: 128 WGLNGWFQGWGWPPCARLLTHWYAKSE 154


>sp|Q9LXM8|RLA24_ARATH 60S acidic ribosomal protein P2-4
           OS=Arabidopsis thaliana GN=RPP2D PE=2 SV=1
          Length = 111

 Score = 30.4 bits (67), Expect = 6.9
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = +1

Query: 346 AFILAARPSFSDVSLPEEPPFEDNNGAAIMEIGSESLEMGLSGLGASMVGPLGGSGRAGL 525
           AF+LA     ++   P     +D  GA   ++  ES+E+ L  +    +  L  SGR  L
Sbjct: 6   AFLLAVLGGNAN---PSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGREKL 62

Query: 526 FRTPISGGVQ-SATSSHG 576
              P  GGV  SA  S G
Sbjct: 63  ASVPSGGGVAVSAAPSSG 80


>sp|Q8DIC3|LNT_THEEB Apolipoprotein N-acyltransferase
           OS=Thermosynechococcus elongatus (strain BP-1) GN=lnt
           PE=3 SV=1
          Length = 506

 Score = 30.0 bits (66), Expect = 8.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 462 GTEWTWGLYGWSLGWKWPGWPFSYTNL 542
           G  W WG YG SL W W   P ++  +
Sbjct: 67  GLCWGWGFYGSSLVWVWDLHPLTWIGI 93


>sp|Q54BX6|HSL62_DICDI HssA/B-like protein 62 OS=Dictyostelium
           discoideum GN=hssl62 PE=3 SV=1
          Length = 85

 Score = 30.0 bits (66), Expect = 9.0
 Identities = 17/38 (44%), Positives = 24/38 (63%)
 Frame = +1

Query: 415 NNGAAIMEIGSESLEMGLSGLGASMVGPLGGSGRAGLF 528
           +NG A + +GS S+  G  G G+S++   GGSG  GLF
Sbjct: 23  SNGGASLSMGSNSVACGGCGGGSSVLIAAGGSG--GLF 58


>sp|P54269|CAUP_DROME Homeobox protein caupolican OS=Drosophila
           melanogaster GN=caup PE=1 SV=2
          Length = 693

 Score = 30.0 bits (66), Expect = 9.0
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 466 LSGLGASMVGPLGGSGRAGLFRTPISGGVQSATSSH 573
           LSG   + + P GGS   GL   P+S G  S +S H
Sbjct: 35  LSGTNEASLSPSGGSTATGLTAGPLSPGAVSQSSHH 70
tr_hit_id Q9C8K8
Definition tr|Q9C8K8|Q9C8K8_ARATH Putative uncharacterized protein F5D21.3 (Putative uncharacterized protein At1g51560) OS=Arabidopsis thaliana
Align length 127
Score (bit) 68.9
E-value 2.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK952126|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0013_E03, 5'
         (588 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9C8K8|Q9C8K8_ARATH Putative uncharacterized protein F5D21.3 ...    69   2e-10
tr|Q9C8H2|Q9C8H2_ARATH Putative uncharacterized protein F19C24.2...    69   2e-10
tr|Q8VXY3|Q8VXY3_ARATH Putative uncharacterized protein At1g5156...    68   4e-10
tr|Q9LJB8|Q9LJB8_ARATH Gb|AAF00629.1 OS=Arabidopsis thaliana PE=...    60   1e-07
tr|Q8L637|Q8L637_ARATH Putative uncharacterized protein At3g2114...    60   1e-07
tr|B8LL84|B8LL84_PICSI Putative uncharacterized protein OS=Picea...    56   2e-06
tr|A9RWS0|A9RWS0_PHYPA Predicted protein (Fragment) OS=Physcomit...    55   3e-06
tr|A7Q485|A7Q485_VITVI Chromosome chr9 scaffold_49, whole genome...    55   4e-06
tr|A5BVP1|A5BVP1_VITVI Putative uncharacterized protein OS=Vitis...    55   4e-06
tr|B6TNA5|B6TNA5_MAIZE Pyridoxamine 5-phosphate oxidase-related ...    53   1e-05
tr|B4FG73|B4FG73_MAIZE Putative uncharacterized protein OS=Zea m...    53   1e-05
tr|A9TS85|A9TS85_PHYPA Predicted protein (Fragment) OS=Physcomit...    52   2e-05
tr|Q7EZB9|Q7EZB9_ORYSJ Os08g0517500 protein OS=Oryza sativa subs...    49   2e-04
tr|B8B8W5|B8B8W5_ORYSI Putative uncharacterized protein OS=Oryza...    49   2e-04
tr|B6TBI9|B6TBI9_MAIZE Pyridoxamine 5-phosphate oxidase family p...    49   2e-04
tr|Q6Z434|Q6Z434_ORYSJ Os02g0148400 protein OS=Oryza sativa subs...    49   3e-04
tr|A3A353|A3A353_ORYSJ Putative uncharacterized protein OS=Oryza...    49   3e-04
tr|B8AHR7|B8AHR7_ORYSI Putative uncharacterized protein OS=Oryza...    47   8e-04
tr|A6FUE6|A6FUE6_9RHOB Surface adhesion protein, putative OS=Ros...    36   1.9  
tr|Q13FK3|Q13FK3_BURXL Outer membrane autotransporter barrel pro...    35   2.4  
tr|A8JA75|A8JA75_CHLRE Predicted protein OS=Chlamydomonas reinha...    35   2.4  
tr|Q0Q5Z1|Q0Q5Z1_DANRE Tropoelastin 1 OS=Danio rerio GN=elna PE=...    35   3.2  
tr|B7AGI1|B7AGI1_9BACE Putative uncharacterized protein OS=Bacte...    34   5.3  
tr|Q29MI7|Q29MI7_DROPS GA16373 OS=Drosophila pseudoobscura pseud...    34   5.4  
tr|B4G964|B4G964_DROPE GL19420 OS=Drosophila persimilis GN=GL194...    34   5.4  
tr|B3DUN4|B3DUN4_METI4 Putative uncharacterized protein OS=Methy...    34   7.0  
tr|B6H939|B6H939_PENCH Pc16g03390 protein OS=Penicillium chrysog...    34   7.0  
tr|A8FQC9|A8FQC9_SHESH Regulator of RpoD, Rsd/AlgQ OS=Shewanella...    34   7.1  
tr|Q9XXZ8|Q9XXZ8_HALRO Homologue of mammlian thyroid peroxidase ...    34   7.1  
tr|Q5ZSG4|Q5ZSG4_LEGPH Hexosephosphate transport OS=Legionella p...    33   9.1  

>tr|Q9C8K8|Q9C8K8_ARATH Putative uncharacterized protein F5D21.3
           (Putative uncharacterized protein At1g51560)
           OS=Arabidopsis thaliana GN=At1g51560 PE=2 SV=1
          Length = 392

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 50/127 (39%), Positives = 62/127 (48%), Gaps = 14/127 (11%)
 Frame = +1

Query: 250 PTHEVTSCSVCTPWASQHSQIFSLRIHSSEDKAFILAARPSFSDVSLPEEPPFEDNNG-- 423
           P    +SC +C    SQ  QI  LRI    ++  +L     F++     E   ED NG  
Sbjct: 27  PALSSSSCWLCN---SQAKQIIKLRIREGSNQG-LLRVHALFNNEEASSES--EDKNGFG 80

Query: 424 ---AAIMEIGSESLEMGLSG---------LGASMVGPLGGSGRAGLFRTPISGGVQSATS 567
              A I  +  E     +SG         +  S+  P GG  RAGLFRTPISGGVQSATS
Sbjct: 81  LLPADIFSLPQEKFGSNVSGEKDSENIIDVETSLAVPHGGGTRAGLFRTPISGGVQSATS 140

Query: 568 SHGLPSP 588
           +HGLP P
Sbjct: 141 AHGLPRP 147


>tr|Q9C8H2|Q9C8H2_ARATH Putative uncharacterized protein F19C24.21
           (Fragment) OS=Arabidopsis thaliana GN=F19C24.21 PE=4
           SV=1
          Length = 157

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 50/127 (39%), Positives = 62/127 (48%), Gaps = 14/127 (11%)
 Frame = +1

Query: 250 PTHEVTSCSVCTPWASQHSQIFSLRIHSSEDKAFILAARPSFSDVSLPEEPPFEDNNG-- 423
           P    +SC +C    SQ  QI  LRI    ++  +L     F++     E   ED NG  
Sbjct: 27  PALSSSSCWLCN---SQAKQIIKLRIREGSNQG-LLRVHALFNNEEASSES--EDKNGFG 80

Query: 424 ---AAIMEIGSESLEMGLSG---------LGASMVGPLGGSGRAGLFRTPISGGVQSATS 567
              A I  +  E     +SG         +  S+  P GG  RAGLFRTPISGGVQSATS
Sbjct: 81  LLPADIFSLPQEKFGSNVSGEKDSENIIDVETSLAVPHGGGTRAGLFRTPISGGVQSATS 140

Query: 568 SHGLPSP 588
           +HGLP P
Sbjct: 141 AHGLPRP 147


>tr|Q8VXY3|Q8VXY3_ARATH Putative uncharacterized protein At1g51560
           OS=Arabidopsis thaliana GN=At1g51560 PE=2 SV=1
          Length = 392

 Score = 67.8 bits (164), Expect = 4e-10
 Identities = 49/127 (38%), Positives = 62/127 (48%), Gaps = 14/127 (11%)
 Frame = +1

Query: 250 PTHEVTSCSVCTPWASQHSQIFSLRIHSSEDKAFILAARPSFSDVSLPEEPPFEDNNG-- 423
           P    +SC +C    SQ  QI  LRI    ++  +L     F++     E   ED NG  
Sbjct: 27  PALSSSSCWLCN---SQAKQIIKLRIREGSNQG-LLRVHALFNNEEASSES--EDKNGFG 80

Query: 424 ---AAIMEIGSESLEMGLSG---------LGASMVGPLGGSGRAGLFRTPISGGVQSATS 567
              A I  +  E     +SG         +  S+  P GG  RAGL+RTPISGGVQSATS
Sbjct: 81  LLPADIFSLPQEKFGSNVSGEKDSENIIDVETSLAVPHGGGTRAGLYRTPISGGVQSATS 140

Query: 568 SHGLPSP 588
           +HGLP P
Sbjct: 141 AHGLPRP 147


>tr|Q9LJB8|Q9LJB8_ARATH Gb|AAF00629.1 OS=Arabidopsis thaliana PE=4
           SV=1
          Length = 395

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 48/130 (36%), Positives = 61/130 (46%), Gaps = 16/130 (12%)
 Frame = +1

Query: 247 VPTHEVTSCSVCTPWASQHSQIFSLRIHSSEDKAFILAARPSFSDVSLPEEPPFE--DNN 420
           +PT   +SC  C   +   +Q   LR+ +       + A        L  E P E  DNN
Sbjct: 23  LPTSSQSSCWFCN--SLPKTQFPKLRLSNGSSHGLRIQAL-------LRNETPSEGEDNN 73

Query: 421 GAA-----IMEIGSESLEMGLSG--------LGASMVGPLGGSG-RAGLFRTPISGGVQS 558
           G       I  +  E L    +G        + AS+  P GG G RAGLFRTPISGGVQ+
Sbjct: 74  GFGFFPGDIFSLSQEKLGSNSNGETSHSVIDVEASLAHPQGGGGNRAGLFRTPISGGVQN 133

Query: 559 ATSSHGLPSP 588
           ATS+H LP P
Sbjct: 134 ATSAHALPRP 143


>tr|Q8L637|Q8L637_ARATH Putative uncharacterized protein At3g21140
           OS=Arabidopsis thaliana GN=At3g21140 PE=2 SV=1
          Length = 387

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 48/130 (36%), Positives = 61/130 (46%), Gaps = 16/130 (12%)
 Frame = +1

Query: 247 VPTHEVTSCSVCTPWASQHSQIFSLRIHSSEDKAFILAARPSFSDVSLPEEPPFE--DNN 420
           +PT   +SC  C   +   +Q   LR+ +       + A        L  E P E  DNN
Sbjct: 23  LPTSSQSSCWFCN--SLPKTQFPKLRLSNGSSHGLRIQAL-------LRNETPSEGEDNN 73

Query: 421 GAA-----IMEIGSESLEMGLSG--------LGASMVGPLGGSG-RAGLFRTPISGGVQS 558
           G       I  +  E L    +G        + AS+  P GG G RAGLFRTPISGGVQ+
Sbjct: 74  GFGFFPGDIFSLSQEKLGSNSNGETSHSVIDVEASLAHPQGGGGNRAGLFRTPISGGVQN 133

Query: 559 ATSSHGLPSP 588
           ATS+H LP P
Sbjct: 134 ATSAHALPRP 143


>tr|B8LL84|B8LL84_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 418

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 28/34 (82%), Positives = 29/34 (85%)
 Frame = +1

Query: 487 MVGPLGGSGRAGLFRTPISGGVQSATSSHGLPSP 588
           M GP GGS R GLFRTPISGGVQSATS+HGLP P
Sbjct: 141 MGGPSGGS-RTGLFRTPISGGVQSATSAHGLPRP 173


>tr|A9RWS0|A9RWS0_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_120477 PE=4 SV=1
          Length = 292

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 32/49 (65%), Positives = 37/49 (75%), Gaps = 1/49 (2%)
 Frame = +1

Query: 445 SESLEMGLSGLGASMVGPLGGSG-RAGLFRTPISGGVQSATSSHGLPSP 588
           SES+ +G++   A+  G    SG RAGLFRTPISGGVQSATSSHGLP P
Sbjct: 2   SESI-IGVTTSPATTAGTPNTSGSRAGLFRTPISGGVQSATSSHGLPHP 49


>tr|A7Q485|A7Q485_VITVI Chromosome chr9 scaffold_49, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00029588001
           PE=4 SV=1
          Length = 396

 Score = 54.7 bits (130), Expect = 4e-06
 Identities = 25/29 (86%), Positives = 26/29 (89%)
 Frame = +1

Query: 502 GGSGRAGLFRTPISGGVQSATSSHGLPSP 588
           GG  RAGLFRTPISGGVQSATS+HGLP P
Sbjct: 123 GGGTRAGLFRTPISGGVQSATSAHGLPRP 151


>tr|A5BVP1|A5BVP1_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_029195 PE=4 SV=1
          Length = 478

 Score = 54.7 bits (130), Expect = 4e-06
 Identities = 25/29 (86%), Positives = 26/29 (89%)
 Frame = +1

Query: 502 GGSGRAGLFRTPISGGVQSATSSHGLPSP 588
           GG  RAGLFRTPISGGVQSATS+HGLP P
Sbjct: 145 GGGTRAGLFRTPISGGVQSATSAHGLPRP 173


>tr|B6TNA5|B6TNA5_MAIZE Pyridoxamine 5-phosphate oxidase-related
           OS=Zea mays PE=2 SV=1
          Length = 365

 Score = 52.8 bits (125), Expect = 1e-05
 Identities = 29/65 (44%), Positives = 38/65 (58%), Gaps = 8/65 (12%)
 Frame = +1

Query: 418 NGAAIMEIGSESLEMGLSGLGASM--------VGPLGGSGRAGLFRTPISGGVQSATSSH 573
           NG+ ++++ S+S   G+  + A          V       RAGLFRTPISGGVQSAT +H
Sbjct: 58  NGSPVLKLNSDSSLNGVLPIAADKSQKASSTNVSTDSSGSRAGLFRTPISGGVQSATFAH 117

Query: 574 GLPSP 588
           GLP P
Sbjct: 118 GLPPP 122