DK952085 |
Clone id |
TST38A01NGRL0013_C08 |
Library |
TST38 |
Length |
613 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0013_C08. 5' end sequence. |
Accession |
DK952085 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL3337Contig1 |
Sequence |
TGGAAGCATCTCTACTGCCACACGAAGATTACACTCAGGTTGTGTATTTCTGCGTTGCGT TTTAACAAGAAGAATACACGATGCAGTTAAAAGAGTTCGAAGGGTCAGAGGATTTTTCGG GAAGAGAGTGGATTTCTATGACGTGATAATGCCAACTCCAGTCCCGAATGAGGATATAGA GGGGATGCGAAAAAAGATCAGAGAGGAAGAAATCGACCTTGAAAGACTCAAAGAGCTCTC TAAAGAAGAAATGAAGATGAAGCTGGCTGAGATGGAAGCAGCTAGTCAGCAGGATCCACT AATCACCCTTGGTTCAAATATAAGAGTTCTCCATGGACCTTACGCGAATTTTGAAGGTTG CATTACAGGCTTACCTGATGGAAGTAAAGAGGTTGAGGTGTCGTTAATGGCATTTGGCGA ATTACAGAAGGTTATACTAGCGTCGAACGAGATAGAGATTCTACCTAGAGCAGCTTAAGT CATAATGCGGCTCTATTAGTATTGATACAAGATTTATCTCACTGGTCAGGTTTACTTTCG TCCAGAGCATTGGAACTGGCATCTTGATGCAAAAGCATTCAAACCAGATAGCAGTATGAA GATGGAACCAGAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P36262 |
Definition |
sp|P36262|NUSG_LIBAS Transcription antitermination protein nusG (Fragment) OS=Liberibacter asiaticus |
Align length |
50 |
Score (bit) |
37.4 |
E-value |
0.062 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B6TZG2 |
Definition |
tr|B6TZG2|B6TZG2_MAIZE Transcription termination factor nusG family protein OS=Zea mays |
Align length |
177 |
Score (bit) |
49.7 |
E-value |
0.0001 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK952085|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0013_C08, 5' (613 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B6TZG2|B6TZG2_MAIZE Transcription termination factor nusG fam... 50 1e-04 tr|Q94GE2|Q94GE2_ORYSA Putative transcription factor OS=Oryza sa... 49 2e-04 tr|Q10BA7|Q10BA7_ORYSJ Os03g0825500 protein OS=Oryza sativa subs... 49 2e-04 tr|A2XNJ4|A2XNJ4_ORYSI Putative uncharacterized protein OS=Oryza... 49 2e-04 tr|A9SPI1|A9SPI1_PHYPA Predicted protein OS=Physcomitrella paten... 45 0.003 tr|Q9SR41|Q9SR41_ARATH F3L24.8 protein OS=Arabidopsis thaliana G... 41 0.048 tr|Q94AA3|Q94AA3_ARATH AT3g09210/F3L24_8 OS=Arabidopsis thaliana... 41 0.048 tr|Q8LAK7|Q8LAK7_ARATH Putative uncharacterized protein OS=Arabi... 41 0.048 tr|Q211C3|Q211C3_RHOPB Transcription antitermination protein nus... 41 0.063 tr|Q07KJ6|Q07KJ6_RHOP5 Transcription antitermination protein nus... 41 0.063 tr|A5ELP3|A5ELP3_BRASB Transcription antitermination protein nus... 41 0.063 tr|A7PNY5|A7PNY5_VITVI Chromosome chr8 scaffold_23, whole genome... 41 0.063 tr|A4YSH4|A4YSH4_BRASO Transcription antitermination protein nus... 40 0.14 tr|B6G677|B6G677_9ACTN Putative uncharacterized protein OS=Colli... 40 0.14 tr|B7FKN1|B7FKN1_MEDTR Putative uncharacterized protein OS=Medic... 40 0.14 tr|B6GB38|B6GB38_9ACTN Putative uncharacterized protein OS=Colli... 39 0.24 tr|A5PE83|A5PE83_9SPHN Transcription antitermination protein nus... 39 0.24 tr|Q89J68|Q89J68_BRAJA Transcription antitermination protein nus... 39 0.31 tr|Q6N4R3|Q6N4R3_RHOPA Transcription antitermination protein nus... 39 0.31 tr|Q2IXS9|Q2IXS9_RHOP2 Transcription antitermination protein nus... 39 0.31 tr|Q1QN49|Q1QN49_NITHX Transcription antitermination protein nus... 39 0.31 tr|Q134R2|Q134R2_RHOPS Transcription antitermination protein nus... 39 0.31 tr|B3QC06|B3QC06_RHOPT NusG antitermination factor OS=Rhodopseud... 39 0.31 tr|A3WVQ3|A3WVQ3_9BRAD Transcription antitermination protein nus... 39 0.31 tr|Q9A3J9|Q9A3J9_CAUCR Transcription antitermination protein nus... 38 0.41 tr|Q2N7N0|Q2N7N0_ERYLH Transcription antitermination protein nus... 38 0.41 tr|Q0AUG6|Q0AUG6_SYNWW Transcription antitermination protein nus... 38 0.41 tr|B1ZFW8|B1ZFW8_METPB NusG antitermination factor OS=Methylobac... 38 0.41 tr|A9W8L9|A9W8L9_METEP Transcription antitermination protein nus... 38 0.41 tr|B8H420|B8H420_CAUCR Transcription antitermination protein nus... 38 0.41
>tr|B6TZG2|B6TZG2_MAIZE Transcription termination factor nusG family protein OS=Zea mays PE=2 SV=1 Length = 336
Score = 49.7 bits (117), Expect = 1e-04 Identities = 39/177 (22%), Positives = 72/177 (40%), Gaps = 23/177 (12%) Frame = +2
Query: 2 GSISTATRRLHSGCVFLRCVLTRRIHDAXXXXXXXXXXXXXXXDFY--DVIMPTPVPNED 175 G+IS ++ LH+G VFL C L + +HD + P P+P ++ Sbjct: 151 GAISVKSKPLHAGLVFLHCTLNKELHDFIRDTEGCYGFIGATVGSIKRQIKKPKPIPVDE 210
Query: 176 IEGMRKKIREEEIDLERXXXXXXXXXXXXXXXXXXXXQQDPLI----------------- 304 +E + ++ +EE+ ++R + L+ Sbjct: 211 VESIIREEKEEQERVDREFEEMENMGNIEPFSKPVEESELMLMNKIKKQFKKSSSQGGTR 270
Query: 305 ----TLGSNIRVLHGPYANFEGCITGLPDGSKEVEVSLMAFGELQKVILASNEIEIL 463 + G+ + VL GP+A+F G I + +K+ V L FG+ V L ++IE++ Sbjct: 271 HSAFSPGATVHVLSGPFADFTGSILEVNRKNKKATVQLSLFGKESFVDLDFDQIEVV 327
>tr|Q94GE2|Q94GE2_ORYSA Putative transcription factor OS=Oryza sativa GN=OJ1111_B11.18 PE=4 SV=1 Length = 330
Score = 48.9 bits (115), Expect = 2e-04 Identities = 40/175 (22%), Positives = 69/175 (39%), Gaps = 23/175 (13%) Frame = +2
Query: 2 GSISTATRRLHSGCVFLRCVLTRRIHDAXXXXXXXXXXXXXXXDFY--DVIMPTPVPNED 175 GSIST ++ LH G VFL C L + +HD + P P+P E+ Sbjct: 152 GSISTKSKPLHPGLVFLYCTLNKEVHDFIRDTEGCYGFIGATVGSIKRQIKKPKPIPVEE 211
Query: 176 IEGMRKKIREEEIDLERXXXXXXXXXXXXXXXXXXXXQQDPLI----------------- 304 +E + ++ +EE+ ++R + L+ Sbjct: 212 VESIIREEKEEQERVDREFEEMENGGIVESFNKPVEDSELMLMNKIKRQFKKPISKGGSN 271
Query: 305 ----TLGSNIRVLHGPYANFEGCITGLPDGSKEVEVSLMAFGELQKVILASNEIE 457 T G+++ VL GP+ F G + + +K+ + L FG+ V L ++IE Sbjct: 272 HNAFTPGASVHVLSGPFEGFTGSLLEVNRKNKKATLQLTLFGKESFVDLDFDQIE 326
>tr|Q10BA7|Q10BA7_ORYSJ Os03g0825500 protein OS=Oryza sativa subsp. japonica GN=Os03g0825500 PE=4 SV=1 Length = 330
Score = 48.9 bits (115), Expect = 2e-04 Identities = 40/175 (22%), Positives = 69/175 (39%), Gaps = 23/175 (13%) Frame = +2
Query: 2 GSISTATRRLHSGCVFLRCVLTRRIHDAXXXXXXXXXXXXXXXDFY--DVIMPTPVPNED 175 GSIST ++ LH G VFL C L + +HD + P P+P E+ Sbjct: 152 GSISTKSKPLHPGLVFLYCTLNKEVHDFIRDTEGCYGFIGATVGSIKRQIKKPKPIPVEE 211
Query: 176 IEGMRKKIREEEIDLERXXXXXXXXXXXXXXXXXXXXQQDPLI----------------- 304 +E + ++ +EE+ ++R + L+ Sbjct: 212 VESIIREEKEEQERVDREFEEMENGGIVESFNKPVEDSELMLMNKIKRQFKKPISKGGSN 271
Query: 305 ----TLGSNIRVLHGPYANFEGCITGLPDGSKEVEVSLMAFGELQKVILASNEIE 457 T G+++ VL GP+ F G + + +K+ + L FG+ V L ++IE Sbjct: 272 HNAFTPGASVHVLSGPFEGFTGSLLEVNRKNKKATLQLTLFGKESFVDLDFDQIE 326
>tr|A2XNJ4|A2XNJ4_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_14139 PE=4 SV=1 Length = 330
Score = 48.9 bits (115), Expect = 2e-04 Identities = 40/175 (22%), Positives = 69/175 (39%), Gaps = 23/175 (13%) Frame = +2
Query: 2 GSISTATRRLHSGCVFLRCVLTRRIHDAXXXXXXXXXXXXXXXDFY--DVIMPTPVPNED 175 GSIST ++ LH G VFL C L + +HD + P P+P E+ Sbjct: 152 GSISTKSKPLHPGLVFLYCTLNKEVHDFIRDTEGCYGFIGATVGSIKRQIKKPKPIPVEE 211
Query: 176 IEGMRKKIREEEIDLERXXXXXXXXXXXXXXXXXXXXQQDPLI----------------- 304 +E + ++ +EE+ ++R + L+ Sbjct: 212 VESIIREEKEEQERVDREFEEMENGGIVESFNKPVEDSELMLMNKIKRQFKKPISKGGSN 271
Query: 305 ----TLGSNIRVLHGPYANFEGCITGLPDGSKEVEVSLMAFGELQKVILASNEIE 457 T G+++ VL GP+ F G + + +K+ + L FG+ V L ++IE Sbjct: 272 HNAFTPGASVHVLSGPFEGFTGSLLEVNRKNKKATLQLTLFGKESFVDLDFDQIE 326
>tr|A9SPI1|A9SPI1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_166017 PE=4 SV=1 Length = 719
Score = 45.4 bits (106), Expect = 0.003 Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 12/152 (7%) Frame = +2
Query: 2 GSISTATRRLHSGCVFLRCVLTRRIHD---AXXXXXXXXXXXXXXXDFYDVIMPTPVPNE 172 G S + RL+ GC+ +RCV+ R +++ + D+I+P+ V Sbjct: 165 GRYSDSRVRLYPGCLLIRCVMNRDVYNMIRSNLRIYNFFGTKAQGTSVSDMIIPSAVSII 224
Query: 173 DIEGMRKKIRE---------EEIDLERXXXXXXXXXXXXXXXXXXXXQQDPLITLGSNIR 325 +IE + +K+ E EE D E P I G+ IR Sbjct: 225 EIEELFRKMEEAEAEFKVLKEEADREADEREKLEKQAKLKAQIENLPPPPPTIEKGALIR 284
Query: 326 VLHGPYANFEGCITGLPDGSKEVEVSLMAFGE 421 + GP+ N G + + ++ V++S++ FG+ Sbjct: 285 INVGPFINHTGIVNYVDHENETVQLSVVIFGQ 316
>tr|Q9SR41|Q9SR41_ARATH F3L24.8 protein OS=Arabidopsis thaliana GN=F3L24.8 PE=4 SV=1 Length = 332
Score = 41.2 bits (95), Expect = 0.048 Identities = 40/184 (21%), Positives = 64/184 (34%), Gaps = 33/184 (17%) Frame = +2
Query: 2 GSISTATRRLHSGCVFLRCVLTRRIHDA--XXXXXXXXXXXXXXXDFYDVIMPTPVPNED 175 GSIS + + GC+F+RC+L + IHD+ + P PV + D Sbjct: 143 GSISVKPKPVFPGCIFIRCILNKEIHDSIRDVDGVGGFIGSKVGNTKRQINKPRPVDDSD 202
Query: 176 IEGMRKKIRE---------EEID----------------------LERXXXXXXXXXXXX 262 +E + K+ +E EE D +E Sbjct: 203 LEAIFKQAKEAQEKADSEFEEADRAEEEASILASQELLALSNSDVIETVAESKPKRAPRK 262
Query: 263 XXXXXXXXQQDPLITLGSNIRVLHGPYANFEGCITGLPDGSKEVEVSLMAFGELQKVILA 442 + + GS +RVL G +A F G + L + + V FG+ V + Sbjct: 263 ATLATETKAKKKKLAAGSTVRVLSGTFAEFVGNLKKLNRKTAKATVGFTLFGKETLVEID 322
Query: 443 SNEI 454 NE+ Sbjct: 323 INEL 326
>tr|Q94AA3|Q94AA3_ARATH AT3g09210/F3L24_8 OS=Arabidopsis thaliana GN=At3g09210 PE=2 SV=1 Length = 333
Score = 41.2 bits (95), Expect = 0.048 Identities = 40/184 (21%), Positives = 64/184 (34%), Gaps = 33/184 (17%) Frame = +2
Query: 2 GSISTATRRLHSGCVFLRCVLTRRIHDA--XXXXXXXXXXXXXXXDFYDVIMPTPVPNED 175 GSIS + + GC+F+RC+L + IHD+ + P PV + D Sbjct: 144 GSISVKPKPVFPGCIFIRCILNKEIHDSIRDVDGVGGFIGSKVGNTKRQINKPRPVDDSD 203
Query: 176 IEGMRKKIRE---------EEID----------------------LERXXXXXXXXXXXX 262 +E + K+ +E EE D +E Sbjct: 204 LEAIFKQAKEAQEKADSEFEEADRAEEEASILASQELLALSNSDVIETVAESKPKRAPRK 263
Query: 263 XXXXXXXXQQDPLITLGSNIRVLHGPYANFEGCITGLPDGSKEVEVSLMAFGELQKVILA 442 + + GS +RVL G +A F G + L + + V FG+ V + Sbjct: 264 ATLATETKAKKKKLAAGSTVRVLSGTFAEFVGNLKKLNRKTAKATVGFTLFGKETLVEID 323
Query: 443 SNEI 454 NE+ Sbjct: 324 INEL 327
>tr|Q8LAK7|Q8LAK7_ARATH Putative uncharacterized protein OS=Arabidopsis thaliana PE=2 SV=1 Length = 333
Score = 41.2 bits (95), Expect = 0.048 Identities = 40/184 (21%), Positives = 64/184 (34%), Gaps = 33/184 (17%) Frame = +2
Query: 2 GSISTATRRLHSGCVFLRCVLTRRIHDA--XXXXXXXXXXXXXXXDFYDVIMPTPVPNED 175 GSIS + + GC+F+RC+L + IHD+ + P PV + D Sbjct: 144 GSISVKPKPVFPGCIFIRCILNKEIHDSIRDVDGVGGFIVSKVGNTKRQINKPRPVDDSD 203
Query: 176 IEGMRKKIRE---------EEID----------------------LERXXXXXXXXXXXX 262 +E + K+ +E EE D +E Sbjct: 204 LEAIFKQAKEAQEKADSEFEEADRAEEEASILASQELLALSNSDVIETVAESKPKRAPRK 263
Query: 263 XXXXXXXXQQDPLITLGSNIRVLHGPYANFEGCITGLPDGSKEVEVSLMAFGELQKVILA 442 + + GS +RVL G +A F G + L + + V FG+ V + Sbjct: 264 ATLATETKAKKKKLAAGSTVRVLSGTFAEFVGNLKKLNRKTAKATVGFTLFGKETLVEID 323
Query: 443 SNEI 454 NE+ Sbjct: 324 INEL 327
>tr|Q211C3|Q211C3_RHOPB Transcription antitermination protein nusG OS=Rhodopseudomonas palustris (strain BisB18) GN=RPC_3473 PE=3 SV=1 Length = 176
Score = 40.8 bits (94), Expect = 0.063 Identities = 17/50 (34%), Positives = 29/50 (58%) Frame = +2
Query: 308 LGSNIRVLHGPYANFEGCITGLPDGSKEVEVSLMAFGELQKVILASNEIE 457 +G N+RV GP+A+F G + + +G V+V++ FG V L ++E Sbjct: 125 IGENVRVADGPFASFSGVVEEIDEGRSRVKVAVSIFGRATPVELEFGQVE 174
>tr|Q07KJ6|Q07KJ6_RHOP5 Transcription antitermination protein nusG OS=Rhodopseudomonas palustris (strain BisA53) GN=RPE_3608 PE=3 SV=1 Length = 176
Score = 40.8 bits (94), Expect = 0.063 Identities = 17/50 (34%), Positives = 29/50 (58%) Frame = +2
Query: 308 LGSNIRVLHGPYANFEGCITGLPDGSKEVEVSLMAFGELQKVILASNEIE 457 +G N+RV GP+A+F G + + +G V+V++ FG V L ++E Sbjct: 125 IGENVRVADGPFASFSGVVEEIDEGRSRVKVAVSIFGRATPVELEFGQVE 174
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