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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951771
Clone id TST38A01NGRL0012_E16
Library
Length 544
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0012_E16. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
GGAGTAGTTAATGTGCTATGGCACACTATTTGCACGAAGAATATGTCCTGGGCATTGACC
CTTTTTCACACTCAAGGCAATTTAATTGTTTCTCATTTGCAATCATGGACTTTTCATCAG
GCAAGTAAGGAGAAGGCCATGCAAGCTATGTCTCAGCTATCTCCTATGACCTGCATCATT
ATTTCAGAGAGAAAATATGCCTTACATTTGCATGTCAGCTCTAGGGTTAAATTTTTCAAT
GGCTAAATGTGTTTTTTTAACTCGATTTCTAGGCATATGGGTCCAAATGAAAGTGAGTTG
TATTGTTTCAATATTGTTGGCTGTGGAAGAGATCCTAGAAAGTTGCACAGTAGTGAAACT
CCCTAAGTTTTGATTTGAATGCTGAAAGGATGCTAGGGAGGTGGAAGAGCTGATAGTCTC
CATGTTAGTACACTCAAGTTTGAAAATTATATTGTGACCATGTGTGCATGTGTATATGTT
TTGCACGCACAAGAAAGCGTGATAACATTTTGGGTGGATGTCAGTTTAAATTTATCCTTC
TTTT
■■Homology search results ■■ -
sp_hit_id Q9H195
Definition sp|Q9H195|MUC3B_HUMAN Mucin-3B (Fragment) OS=Homo sapiens
Align length 58
Score (bit) 35.8
E-value 0.14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951771|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0012_E16, 5'
         (544 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9H195|MUC3B_HUMAN Mucin-3B (Fragment) OS=Homo sapiens GN=MUC...    36   0.14 
sp|Q1LZA4|PIGW_BOVIN Phosphatidylinositol-glycan biosynthesis cl...    33   0.89 
sp|Q02505|MUC3A_HUMAN Mucin-3A OS=Homo sapiens GN=MUC3A PE=2 SV=2      33   1.2  
sp|Q6NSI8|K1841_HUMAN Uncharacterized protein KIAA1841 OS=Homo s...    32   1.5  
sp|Q12879|NMDE1_HUMAN Glutamate [NMDA] receptor subunit epsilon-...    32   2.0  
sp|Q7Z7B1|PIGW_HUMAN Phosphatidylinositol-glycan biosynthesis cl...    31   4.4  
sp|Q00959|NMDE1_RAT Glutamate [NMDA] receptor subunit epsilon-1 ...    31   4.4  
sp|Q5IS45|NMDE1_PANTR Glutamate [NMDA] receptor subunit epsilon-...    31   4.4  
sp|P35436|NMDE1_MOUSE Glutamate [NMDA] receptor subunit epsilon-...    31   4.4  
sp|Q971K9|ARGDC_SULTO Arginine decarboxylase proenzyme OS=Sulfol...    30   7.6  
sp|Q9UWU1|ARGDC_SULSO Arginine decarboxylase proenzyme OS=Sulfol...    30   7.6  
sp|P79088|SC61A_SCHPO Protein transport protein sec61 subunit al...    30   9.9  
sp|Q2U5K2|DRE2_ASPOR Protein dre2 OS=Aspergillus oryzae GN=dre2 ...    30   9.9  
sp|A4YH98|ARGDC_METS5 Arginine decarboxylase proenzyme OS=Metall...    30   9.9  

>sp|Q9H195|MUC3B_HUMAN Mucin-3B (Fragment) OS=Homo sapiens GN=MUC3B
           PE=2 SV=1
          Length = 901

 Score = 35.8 bits (81), Expect = 0.14
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = -2

Query: 444 FKLECTNMETISSSTSLASFQHSNQNLGSFTTVQLSRISSTANNIETIQLTFIWTHMP 271
           F +  T+  T+ ++ S+ S Q S  +   FTT   +R S++ N I T   T IW+  P
Sbjct: 207 FPIPSTHSSTLQTTPSIPSLQTSLTSTSEFTTESFTRGSTSTNAILTSFSTIIWSSTP 264


>sp|Q1LZA4|PIGW_BOVIN Phosphatidylinositol-glycan biosynthesis class
           W protein OS=Bos taurus GN=PIGW PE=2 SV=1
          Length = 503

 Score = 33.1 bits (74), Expect = 0.89
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = +1

Query: 412 DSLHVST----LKFENYIVTMCACVYVLHAQESVITFW 513
           D+LH ST         Y+ T C  +YVLH Q+  I FW
Sbjct: 466 DTLHSSTPWALCLLNLYMFTNCLIIYVLHLQDKTIKFW 503


>sp|Q02505|MUC3A_HUMAN Mucin-3A OS=Homo sapiens GN=MUC3A PE=2 SV=2
          Length = 2541

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -2

Query: 429  TNMETISSSTSLASFQHSNQNLGSFTTVQLSRISSTANNIETIQLTFIWTHMP 271
            T+  T+ ++ S  S Q S  +   FTT   +R S++ N I T   T IW+  P
Sbjct: 1852 THSSTLQTTPSTPSLQTSLTSTSEFTTESFTRGSTSTNAILTSFSTIIWSSTP 1904


>sp|Q6NSI8|K1841_HUMAN Uncharacterized protein KIAA1841 OS=Homo
           sapiens GN=KIAA1841 PE=2 SV=2
          Length = 718

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 14/71 (19%), Positives = 35/71 (49%)
 Frame = -2

Query: 510 KCYHAFLCVQNIYTCTHGHNIIFKLECTNMETISSSTSLASFQHSNQNLGSFTTVQLSRI 331
           +CY AFLC++  +   H   +++    +++ T+ +      +   NQ +  F   QL++ 
Sbjct: 401 RCYQAFLCIEFSHCQYHSETVVYPTAASSLNTVGTGI----YPCCNQKVLRFDPTQLTKG 456

Query: 330 SSTANNIETIQ 298
               +++ T++
Sbjct: 457 CKVRDHMVTLR 467


>sp|Q12879|NMDE1_HUMAN Glutamate [NMDA] receptor subunit epsilon-1
            OS=Homo sapiens GN=GRIN2A PE=1 SV=1
          Length = 1464

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = -2

Query: 495  FLCVQNIYTCTHGHNIIFKLECTNMETISSSTSLASFQHSNQNLGSFTTVQLSRISSTAN 316
            F   + IY+C HG +I  K +  +     S +++     S +N+ S + +  SR+ S   
Sbjct: 861  FSISRGIYSCIHGVHIEEKKKSPDFNLTGSQSNMLKLLRSAKNISSMSNMNSSRMDSPKR 920

Query: 315  NIETIQ 298
              + IQ
Sbjct: 921  AADFIQ 926


>sp|Q7Z7B1|PIGW_HUMAN Phosphatidylinositol-glycan biosynthesis class
           W protein OS=Homo sapiens GN=PIGW PE=1 SV=1
          Length = 504

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
 Frame = +1

Query: 412 DSLHVSTL----KFENYIVTMCACVYVLHAQESVITFW 513
           D+LH STL        Y+ + C  VYVL+ Q+  + FW
Sbjct: 467 DTLHSSTLWALFVVNLYMFSNCLIVYVLYLQDKTVQFW 504


>sp|Q00959|NMDE1_RAT Glutamate [NMDA] receptor subunit epsilon-1
            OS=Rattus norvegicus GN=Grin2a PE=1 SV=2
          Length = 1464

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = -2

Query: 495  FLCVQNIYTCTHGHNIIFKLECTNMETISSSTSLASFQHSNQNLGSFTTVQLSRISSTAN 316
            F   + IY+C HG +I  K +  +     S +++     S +N+ + + +  SR+ S   
Sbjct: 861  FSISRGIYSCIHGVHIEEKKKSPDFNLTGSQSNMLKLLRSAKNISNMSNMNSSRMDSPKR 920

Query: 315  NIETIQ 298
              + IQ
Sbjct: 921  ATDFIQ 926


>sp|Q5IS45|NMDE1_PANTR Glutamate [NMDA] receptor subunit epsilon-1
            OS=Pan troglodytes GN=GRIN2A PE=2 SV=1
          Length = 1464

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = -2

Query: 495  FLCVQNIYTCTHGHNIIFKLECTNMETISSSTSLASFQHSNQNLGSFTTVQLSRISSTAN 316
            F   + IY+C HG +I  K +  +     S +++     S +N+ + + +  SR+ S   
Sbjct: 861  FSISRGIYSCIHGVHIEEKKKSPDFNLTGSQSNMLKLLRSAKNISNMSNMNSSRMDSPKR 920

Query: 315  NIETIQ 298
              + IQ
Sbjct: 921  AADFIQ 926


>sp|P35436|NMDE1_MOUSE Glutamate [NMDA] receptor subunit epsilon-1
            OS=Mus musculus GN=Grin2a PE=1 SV=2
          Length = 1464

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = -2

Query: 495  FLCVQNIYTCTHGHNIIFKLECTNMETISSSTSLASFQHSNQNLGSFTTVQLSRISSTAN 316
            F   + IY+C HG +I  K +  +     S +++     S +N+ + + +  SR+ S   
Sbjct: 861  FSISRGIYSCIHGVHIEEKKKSPDFNLTGSQSNMLKLLRSAKNISNMSNMNSSRMDSPKR 920

Query: 315  NIETIQ 298
              + IQ
Sbjct: 921  AADFIQ 926


>sp|Q971K9|ARGDC_SULTO Arginine decarboxylase proenzyme
           OS=Sulfolobus tokodaii GN=ST1348 PE=3 SV=1
          Length = 128

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 493 LVRAKHIHMHTWSQYNFQT 437
           LV   HI +HTW++YN+ T
Sbjct: 72  LVEESHIALHTWTEYNYAT 90
tr_hit_id Q6CIV3
Definition tr|Q6CIV3|Q6CIV3_KLULA KLLA0F23694p OS=Kluyveromyces lactis
Align length 88
Score (bit) 33.9
E-value 5.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951771|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0012_E16, 5'
         (544 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6CIV3|Q6CIV3_KLULA KLLA0F23694p OS=Kluyveromyces lactis GN=K...    34   5.8  
tr|B7ZSK2|B7ZSK2_XENLA N-methyl-D-aspartate receptor subunit NR2...    33   9.9  
tr|B7ZSK1|B7ZSK1_XENLA N-methyl-D-aspartate receptor subunit NR2...    33   9.9  
tr|A9QW72|A9QW72_XENLA N-methyl-D-aspartate receptor subunit NR2...    33   9.9  

>tr|Q6CIV3|Q6CIV3_KLULA KLLA0F23694p OS=Kluyveromyces lactis
           GN=KLLA0F23694g PE=4 SV=1
          Length = 721

 Score = 33.9 bits (76), Expect = 5.8
 Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
 Frame = -2

Query: 492 LCVQNIYTCTHGHNIIFKLECTNMETISSSTSLASFQHSNQNLGSFTTV-------QLSR 334
           LC+ N+Y  + G  +++ LE         STSL    H   N+ ++  V       QL  
Sbjct: 134 LCLGNVYVNSKGEWVLYALEL--------STSLNDTNHFTSNIQTYNDVVRGYDDWQLG- 184

Query: 333 ISSTANNIETIQLTFIWTHMPRNRVKKT 250
            + +A+NI++IQL   +  +  NR+  +
Sbjct: 185 -NGSASNIDSIQLANFFNKLLTNRISSS 211


>tr|B7ZSK2|B7ZSK2_XENLA N-methyl-D-aspartate receptor subunit NR2A
            OS=Xenopus laevis GN=LOC100127346 PE=2 SV=1
          Length = 1451

 Score = 33.1 bits (74), Expect = 9.9
 Identities = 18/83 (21%), Positives = 40/83 (48%)
 Frame = -2

Query: 495  FLCVQNIYTCTHGHNIIFKLECTNMETISSSTSLASFQHSNQNLGSFTTVQLSRISSTAN 316
            F   + IY+C HG +I  K +  +    +S T++     +++N+ + + +  S+ +S   
Sbjct: 853  FSISRGIYSCIHGVHIEEKKKSPDFSFTASQTNMLKLLRASKNIANLSNLNQSQCNSPKR 912

Query: 315  NIETIQLTFIWTHMPRNRVKKTH 247
              + IQ   + T M  ++   T+
Sbjct: 913  TSDYIQRNSLLTDMVLDKGNLTY 935


>tr|B7ZSK1|B7ZSK1_XENLA N-methyl-D-aspartate receptor subunit NR2A
            OS=Xenopus laevis GN=LOC100127346 PE=2 SV=1
          Length = 1451

 Score = 33.1 bits (74), Expect = 9.9
 Identities = 18/83 (21%), Positives = 40/83 (48%)
 Frame = -2

Query: 495  FLCVQNIYTCTHGHNIIFKLECTNMETISSSTSLASFQHSNQNLGSFTTVQLSRISSTAN 316
            F   + IY+C HG +I  K +  +    +S T++     +++N+ + + +  S+ +S   
Sbjct: 853  FSISRGIYSCIHGVHIEEKKKSPDFSFTASQTNMLKLLRASKNIANLSNLNQSQCNSPKR 912

Query: 315  NIETIQLTFIWTHMPRNRVKKTH 247
              + IQ   + T M  ++   T+
Sbjct: 913  TSDYIQRNSLLTDMVLDKGNLTY 935


>tr|A9QW72|A9QW72_XENLA N-methyl-D-aspartate receptor subunit NR2A
            OS=Xenopus laevis GN=grin2a PE=2 SV=1
          Length = 1451

 Score = 33.1 bits (74), Expect = 9.9
 Identities = 18/83 (21%), Positives = 40/83 (48%)
 Frame = -2

Query: 495  FLCVQNIYTCTHGHNIIFKLECTNMETISSSTSLASFQHSNQNLGSFTTVQLSRISSTAN 316
            F   + IY+C HG +I  K +  +    +S T++     +++N+ + + +  S+ +S   
Sbjct: 853  FSISRGIYSCIHGVHIEEKKKSPDFSFTASQTNMLKLLRASKNIANLSNLNQSQCNSPKR 912

Query: 315  NIETIQLTFIWTHMPRNRVKKTH 247
              + IQ   + T M  ++   T+
Sbjct: 913  TSDYIQRNSLLTDMVLDKGNLTY 935