DK951745
Clone id TST38A01NGRL0012_D14
Library
Length 611
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0012_D14. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence
GTCGCCGACCGCGTACAGGTAAGCCTCTGGATTTGAGCTCTCCTAACAGTTTGAGCAAGA
AAAAAACTCCCAAAAGGAAGACTCTGTCTAGCCGCTACTCGGCTATTTTGCCTTCGAAAC
GAAGGAAGCTTGGCCTGAACACGATCAGGGACCCTGTAATCTCTTTGGGAGAGACCCATC
ATGCACCTGAGGCCTGTCATGCAGCGGTGAGTCCGAAGTCCACCAATGCATCTGAAGTCC
CTGCCAAGGAAAAGGAAGCTAGGCATTCTGGAACAAAAGGCCGAGCACGTAAGACAAAGG
CTAAAGCAAGGGCAAGAGCAAGAGCAAGAGCAAGGGGGGCTAATGCAAGAGTAAAAGCAA
GCAGAGGCCTGAAATCAGAGGTTTGTCCAATAGCAAAGCTTGTGGACTCTGAGGATATCT
CCAATGAGGAGGCCGATTCTGAAATAGACTTGTTTCATCCGAATGCCACCACAGAAGTAG
GAAAACAGGGTTTAGAAACAATTGAAGCAGGAGCATTGGACCTAGCAAGAACAGATGATT
TAGATGCCACGCATGCAGACCCAAGACAGAGTTCAGAAAAGCATGTATTGGTAGCAAACA
GAGGACCAGGT
■■Homology search results ■■ -
sp_hit_id A5IMA0
Definition sp|A5IMA0|RS5_THEP1 30S ribosomal protein S5 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995)
Align length 63
Score (bit) 33.5
E-value 0.88
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK951745|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0012_D14, 5'
(611 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|A5IMA0|RS5_THEP1 30S ribosomal protein S5 OS=Thermotoga petro... 33 0.88
sp|Q9X1J2|RS5_THEMA 30S ribosomal protein S5 OS=Thermotoga marit... 33 0.88
sp|A0JM08|K0284_XENTR Protein KIAA0284 homolog OS=Xenopus tropic... 33 1.2
sp|Q06485|YL356_YEAST Uncharacterized mitochondrial membrane pro... 32 2.6
sp|Q4P9X4|SPP2_USTMA Pre-mRNA-splicing factor SPP2 OS=Ustilago m... 31 4.4
sp|A8F4S8|RS5_THELT 30S ribosomal protein S5 OS=Thermotoga letti... 31 5.7
sp|Q9JYM4|ISPD_NEIMB 2-C-methyl-D-erythritol 4-phosphate cytidyl... 31 5.7
sp|Q9JTM3|ISPD_NEIMA 2-C-methyl-D-erythritol 4-phosphate cytidyl... 31 5.7
sp|A9M0U7|ISPD_NEIM0 2-C-methyl-D-erythritol 4-phosphate cytidyl... 31 5.7
sp|Q5F829|ISPD_NEIG1 2-C-methyl-D-erythritol 4-phosphate cytidyl... 30 7.5
sp|A5DBE7|IRS4_PICGU Increased rDNA silencing protein 4 OS=Pichi... 30 9.7

>sp|A5IMA0|RS5_THEP1 30S ribosomal protein S5 OS=Thermotoga
petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995)
GN=rpsE PE=3 SV=1
Length = 178

Score = 33.5 bits (75), Expect = 0.88
Identities = 22/63 (34%), Positives = 29/63 (46%)
Frame = +3

Query: 54 SKKKTPKRKTLSSRYSAILPSKRRKLGLNTIRDPVISLGETHHAPEACHAAVSPKSTNAS 233
+ K T K LS R AI+ +K K+GL +G+ PEA A+S N
Sbjct: 25 TSKVTKGGKNLSFRVVAIVGNKNGKVGLG--------IGKAREVPEAIRKAISAAKRNII 76

Query: 234 EVP 242
EVP
Sbjct: 77 EVP 79


>sp|Q9X1J2|RS5_THEMA 30S ribosomal protein S5 OS=Thermotoga maritima
GN=rpsE PE=3 SV=1
Length = 178

Score = 33.5 bits (75), Expect = 0.88
Identities = 22/63 (34%), Positives = 29/63 (46%)
Frame = +3

Query: 54 SKKKTPKRKTLSSRYSAILPSKRRKLGLNTIRDPVISLGETHHAPEACHAAVSPKSTNAS 233
+ K T K LS R AI+ +K K+GL +G+ PEA A+S N
Sbjct: 25 TSKVTKGGKNLSFRVVAIVGNKNGKVGLG--------IGKAREVPEAIRKAISAAKRNIV 76

Query: 234 EVP 242
EVP
Sbjct: 77 EVP 79


>sp|A0JM08|K0284_XENTR Protein KIAA0284 homolog OS=Xenopus tropicalis
PE=2 SV=1
Length = 1628

Score = 33.1 bits (74), Expect = 1.2
Identities = 17/68 (25%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Frame = +3

Query: 54 SKKKTPKRKTLSSRYSAILPSKRRKLGLNTIRDPVISLGETHHAPEACH--AAVSPKSTN 227
++K+TP+ ++ S +YS+ S+RR+ G + + G H P+ H A+ + +++
Sbjct: 1261 TQKQTPRPRSSSVKYSSSSTSRRRQQGSDYVSTSEEECGSNHSTPKHKHSRASTATQTSR 1320

Query: 228 ASEVPAKE 251
+S V ++
Sbjct: 1321 SSSVSRRQ 1328


>sp|Q06485|YL356_YEAST Uncharacterized mitochondrial membrane
protein YLR356W OS=Saccharomyces cerevisiae GN=YLR356W
PE=1 SV=1
Length = 197

Score = 32.0 bits (71), Expect = 2.6
Identities = 21/61 (34%), Positives = 30/61 (49%)
Frame = +3

Query: 90 SRYSAILPSKRRKLGLNTIRDPVISLGETHHAPEACHAAVSPKSTNASEVPAKEKEARHS 269
S+ S++ P KL + + D +I LGE +HA E P +T S K EA H+
Sbjct: 109 SKESSLFPEDS-KLAASELSDSIIDLGEDNHASENTPRDGKPAATTVS----KPAEALHT 163

Query: 270 G 272
G
Sbjct: 164 G 164


>sp|Q4P9X4|SPP2_USTMA Pre-mRNA-splicing factor SPP2 OS=Ustilago
maydis GN=SPP2 PE=3 SV=1
Length = 417

Score = 31.2 bits (69), Expect = 4.4
Identities = 25/90 (27%), Positives = 35/90 (38%)
Frame = +3

Query: 6 RPRTGKPLDLSSPNSLSKKKTPKRKTLSSRYSAILPSKRRKLGLNTIRDPVISLGETHHA 185
+ R PL+LS P+S S PK K Y + SK + R P
Sbjct: 271 KERPTGPLNLSKPSSSSGNLQPKDK---RDYKYVPVSKSDPRDYSNGRSPSSDHQPREKR 327

Query: 186 PEACHAAVSPKSTNASEVPAKEKEARHSGT 275
P H+ P S ++ ++ ARHS T
Sbjct: 328 PSKSHSTDLPSSHDSRRGDRDDRHARHSRT 357


>sp|A8F4S8|RS5_THELT 30S ribosomal protein S5 OS=Thermotoga
lettingae (strain ATCC BAA-301 / DSM 14385 / TMO)
GN=rpsE PE=3 SV=1
Length = 178

Score = 30.8 bits (68), Expect = 5.7
Identities = 18/69 (26%), Positives = 32/69 (46%)
Frame = +3

Query: 60 KKTPKRKTLSSRYSAILPSKRRKLGLNTIRDPVISLGETHHAPEACHAAVSPKSTNASEV 239
K T KTLS R A++ +++ K+G + +G+ PEA A++ + E+
Sbjct: 29 KVTKGGKTLSFRVLAVVGNRKGKVG--------VGVGKAREVPEAIRKAIAAARASVVEI 80

Query: 240 PAKEKEARH 266
P + H
Sbjct: 81 PLYKTTIPH 89


>sp|Q9JYM4|ISPD_NEIMB 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase OS=Neisseria meningitidis serogroup
B GN=ispD PE=3 SV=1
Length = 229

Score = 30.8 bits (68), Expect = 5.7
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +3

Query: 84 LSSRYSAILPSKRRKLGLNTIRDPVISLGETHHAPEACHAAVSPKSTNASEVPAKEKEAR 263
+ +R+ A P + ++G T+ + I + E H A + VSP+ T A +V + R
Sbjct: 14 IGARFGADKPKQYVEIGSKTVLEHTIGIFERHEAVDLTVVVVSPEDTFADKVQTAFPQVR 73


>sp|Q9JTM3|ISPD_NEIMA 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase OS=Neisseria meningitidis serogroup
A GN=ispD PE=3 SV=1
Length = 229

Score = 30.8 bits (68), Expect = 5.7
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +3

Query: 84 LSSRYSAILPSKRRKLGLNTIRDPVISLGETHHAPEACHAAVSPKSTNASEVPAKEKEAR 263
+ +R+ A P + ++G T+ + I + E H A + VSP+ T A +V + R
Sbjct: 14 IGARFGADKPKQYVEIGSKTVLEHTIGIFERHEAVDLTVVVVSPEDTFADKVQTAFPQVR 73


>sp|A9M0U7|ISPD_NEIM0 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase OS=Neisseria meningitidis serogroup
C (strain 053442) GN=ispD PE=3 SV=1
Length = 229

Score = 30.8 bits (68), Expect = 5.7
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +3

Query: 84 LSSRYSAILPSKRRKLGLNTIRDPVISLGETHHAPEACHAAVSPKSTNASEVPAKEKEAR 263
+ +R+ A P + ++G T+ + I + E H A + VSP+ T A +V + R
Sbjct: 14 IGARFGADKPKQYVEIGSKTVLEHTIGIFERHEAVDLTVVVVSPEDTFADKVQTAFPQVR 73


>sp|Q5F829|ISPD_NEIG1 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase OS=Neisseria gonorrhoeae (strain
ATCC 700825 / FA 1090) GN=ispD PE=1 SV=1
Length = 229

Score = 30.4 bits (67), Expect = 7.5
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +3

Query: 93 RYSAILPSKRRKLGLNTIRDPVISLGETHHAPEACHAAVSPKSTNASEVPAKEKEAR 263
R+ A P + ++G T+ + V+ + E H A + VSP+ T A +V + R
Sbjct: 17 RFGADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDTFADKVQTAFPQVR 73


tr_hit_id B4V8K5
Definition tr|B4V8K5|B4V8K5_9ACTO Putative uncharacterized protein OS=Streptomyces sp. Mg1
Align length 72
Score (bit) 37.7
E-value 0.53
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK951745|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0012_D14, 5'
(611 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B4V8K5|B4V8K5_9ACTO Putative uncharacterized protein OS=Strep... 38 0.53
tr|B4QMF6|B4QMF6_DROSI GD13470 OS=Drosophila simulans GN=GD13470... 34 5.8
tr|Q1JTF1|Q1JTF1_TOXGO Putative uncharacterized protein OS=Toxop... 34 7.6
tr|B6KQY9|B6KQY9_TOXGO Leucine rich repeat protein, putative OS=... 34 7.6
tr|A8XSF3|A8XSF3_CAEBR Putative uncharacterized protein OS=Caeno... 34 7.6
tr|A5DR83|A5DR83_PICGU Putative uncharacterized protein OS=Pichi... 34 7.6
tr|B1LBM3|B1LBM3_THESQ Ribosomal protein S5 OS=Thermotoga sp. (s... 33 10.0
tr|B7RFH6|B7RFH6_9THEM Ribosomal protein S5 OS=Marinitoga piezop... 33 10.0
tr|B4HYN6|B4HYN6_DROSE GM12858 OS=Drosophila sechellia GN=GM1285... 33 10.0

>tr|B4V8K5|B4V8K5_9ACTO Putative uncharacterized protein
OS=Streptomyces sp. Mg1 GN=SSAG_04083 PE=4 SV=1
Length = 1094

Score = 37.7 bits (86), Expect = 0.53
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +3

Query: 57 KKKTPKRKTLSSRYSAILPSKRRKLGLNTIRDPVISLGETHHAPEACHAAVSPKSTNASE 236
K+K P ++ R +A +P++R L R+P ++ G AP A A V + AS
Sbjct: 505 KRKAPTKRARRLRTAAAVPTQRAPLAPQPPREPDVAAGVEPEAPAALEAPVQLSLSEASA 564

Query: 237 V-PAKEKEARHS 269
V PA+ AR+S
Sbjct: 565 VLPAEAGPARNS 576


>tr|B4QMF6|B4QMF6_DROSI GD13470 OS=Drosophila simulans GN=GD13470
PE=4 SV=1
Length = 1046

Score = 34.3 bits (77), Expect = 5.8
Identities = 22/54 (40%), Positives = 28/54 (51%)
Frame = +3

Query: 108 LPSKRRKLGLNTIRDPVISLGETHHAPEACHAAVSPKSTNASEVPAKEKEARHS 269
+P+ RRK+ DP I HH A AA+ P +TN SE A EK AR +
Sbjct: 519 IPAMRRKMS-----DPDI-----HHGTSAMLAALQPDTTNLSESLASEKNARRT 562


>tr|Q1JTF1|Q1JTF1_TOXGO Putative uncharacterized protein
OS=Toxoplasma gondii RH GN=TgIa.0690c PE=4 SV=1
Length = 774

Score = 33.9 bits (76), Expect = 7.6
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Frame = +3

Query: 18 GKPLDLSSPNSLSKKKTPKRKTL---SSRYSAILPSKRRKL--GLNTIRDPVISLGETHH 182
G P + SP S K+TPK+ ++ S A L S RR L G++T + G +
Sbjct: 81 GNPSSIPSPVSKKVKETPKQTSVGGESDAKRATLASPRRPLFSGVHTAQS-----GAEKN 135

Query: 183 APEACHAAVSPKSTNASEVPAKEKEAR---HSGT 275
AP++ + S S++ S+ +E EAR SGT
Sbjct: 136 APKSAASLSSSASSSWSKGEFRENEARREERSGT 169


>tr|B6KQY9|B6KQY9_TOXGO Leucine rich repeat protein, putative
OS=Toxoplasma gondii ME49 GN=TGME49_094930 PE=4 SV=1
Length = 704

Score = 33.9 bits (76), Expect = 7.6
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Frame = +3

Query: 18 GKPLDLSSPNSLSKKKTPKRKTL---SSRYSAILPSKRRKL--GLNTIRDPVISLGETHH 182
G P + SP S K+TPK+ ++ S A L S RR L G++T + G +
Sbjct: 11 GNPSSIPSPVSKKVKETPKQTSVGGESDAKRATLASPRRPLFSGVHTAQS-----GAEKN 65

Query: 183 APEACHAAVSPKSTNASEVPAKEKEAR---HSGT 275
AP++ + S S++ S+ +E EAR SGT
Sbjct: 66 APKSAASLSSSASSSWSKGEFRENEARREERSGT 99


>tr|A8XSF3|A8XSF3_CAEBR Putative uncharacterized protein
OS=Caenorhabditis briggsae GN=CBG18321 PE=4 SV=1
Length = 512

Score = 33.9 bits (76), Expect = 7.6
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Frame = +3

Query: 33 LSSPNSLSKKKTPKRKTLSSRYSAILPSKRRKLGLNTIRDPVISLG---ETHHAPEACHA 203
+SSP+S S K+TP T SS+ +I P+K N D ++LG +T++ A H+
Sbjct: 403 ISSPSSFSAKQTPTSPTNSSQGFSI-PNKS-----NAFAD--LALGKVMKTNYGQSALHS 454

Query: 204 AVSPKSTNASEVP 242
A +P +T +P
Sbjct: 455 APAPSTTGNQSIP 467


>tr|A5DR83|A5DR83_PICGU Putative uncharacterized protein OS=Pichia
guilliermondii GN=PGUG_05784 PE=4 SV=2
Length = 644

Score = 33.9 bits (76), Expect = 7.6
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Frame = +3

Query: 3 RRPRTGKPLDLSS-PNSLSKKKTPKRKTLSSRYSAILPSKRRK--------LGLNTIRDP 155
R P + +DL NSLS +++PKR L + +L +RK +G+N +
Sbjct: 211 RAPLFFRSVDLDRYVNSLSTEESPKRNLLLVNKADLLTETQRKAWADYFNDVGINYVFFS 270

Query: 156 VISLGETHHAPEACHAAVSPKSTNASEVPAKEKEA 260
+ E A A AA + + T++ P ++ +A
Sbjct: 271 AVRAAEQTEAELAAEAAAAERETDSDSEPEQDSDA 305


>tr|B1LBM3|B1LBM3_THESQ Ribosomal protein S5 OS=Thermotoga sp.
(strain RQ2) GN=TRQ2_1377 PE=3 SV=1
Length = 178

Score = 33.5 bits (75), Expect = 10.0
Identities = 22/63 (34%), Positives = 29/63 (46%)
Frame = +3

Query: 54 SKKKTPKRKTLSSRYSAILPSKRRKLGLNTIRDPVISLGETHHAPEACHAAVSPKSTNAS 233
+ K T K LS R AI+ +K K+GL +G+ PEA A+S N
Sbjct: 25 TSKVTKGGKNLSFRVVAIVGNKNGKVGLG--------IGKAREVPEAIRKAISAAKRNII 76

Query: 234 EVP 242
EVP
Sbjct: 77 EVP 79


>tr|B7RFH6|B7RFH6_9THEM Ribosomal protein S5 OS=Marinitoga
piezophila KA3 GN=rpsE PE=4 SV=1
Length = 178

Score = 33.5 bits (75), Expect = 10.0
Identities = 22/63 (34%), Positives = 29/63 (46%)
Frame = +3

Query: 54 SKKKTPKRKTLSSRYSAILPSKRRKLGLNTIRDPVISLGETHHAPEACHAAVSPKSTNAS 233
+ K T K LS R AI+ +K K+GL +G+ PEA A+S N
Sbjct: 25 TSKVTKGGKNLSFRVVAIVGNKNGKVGLG--------IGKAREVPEAIRKAISAAKRNII 76

Query: 234 EVP 242
EVP
Sbjct: 77 EVP 79


>tr|B4HYN6|B4HYN6_DROSE GM12858 OS=Drosophila sechellia GN=GM12858
PE=4 SV=1
Length = 682

Score = 33.5 bits (75), Expect = 10.0
Identities = 21/77 (27%), Positives = 37/77 (48%)
Frame = +3

Query: 21 KPLDLSSPNSLSKKKTPKRKTLSSRYSAILPSKRRKLGLNTIRDPVISLGETHHAPEACH 200
KPL L+ P S PK++ ++ + + K + +++DPV S+ + A ++
Sbjct: 119 KPLILAPPES---PVPPKKQVKKTKAAPVEAKKEQAPAKKSVQDPVPSIKKVPAAKKSGQ 175

Query: 201 AAVSPKSTNASEVPAKE 251
AV K T E P K+
Sbjct: 176 TAVQTKKTAKPEKPGKQ 192