NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951659
Clone id TST38A01NGRL0011_P22
Library
Length 641
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0011_P22. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GTCAGCACGCTGCTTTGTCTTCTCGCAGCCACAGCTGCCGCTTCTGGCTCGTCGTTGCCG
GCTGCATCACCTCGCATCCGTCTGTAACGTGGACTCCCGTGGTGGCGCACACGCAGCGGC
AGCTCCTCCACTGCAGCTCTCGACAGCGAGAAGGCTCAATCGCGTGAAACATCACGGTGG
GCTATTCGACACGATCACCCAACCATCGCACGTGCAGAGGCTAGGGCCTCTTCTTCCTCC
TCCTCCCTCTGCGGCTTATCACCTCCCAAGCCACATTTTGGCAATGGCAGCTCGAAGTGC
TTGCCAGAGCTCTTCCCTCTTGAATTCCCTCACCCAGCTACCTTGCGTTCCTTTCCCTAC
ATCCTCCACCAACGTGAGCTTTGGTAGTTCCTGCCGTGCAAACCACCTCCCGCTTCATGT
CACTGCATCAACATCGGATAGCCGCAAGGCAATGAAAGTTGATGGAACGGTCTTTACGGA
CAGAACAGTGCTTAACATTAATCCCGTGGCCAAGCACGGAGCTCCATCAAGCGTACCTGC
TGCTGCTCCCATTTCTGTGGTGGCCACGCAAGTGGAGACTTTACCCTTGGATAAGTTGAA
GACTGGCTATCTCATATTCAAGGAAAACTACATAAAAAATC
■■Homology search results ■■ -
sp_hit_id Q92563
Definition sp|Q92563|TICN2_HUMAN Testican-2 OS=Homo sapiens
Align length 98
Score (bit) 32.0
E-value 2.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951659|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_P22, 5'
         (641 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q92563|TICN2_HUMAN Testican-2 OS=Homo sapiens GN=SPOCK2 PE=1 ...    32   2.8  
sp|Q0V0I4|PAN3_PHANO PAB-dependent poly(A)-specific ribonuclease...    30   8.1  

>sp|Q92563|TICN2_HUMAN Testican-2 OS=Homo sapiens GN=SPOCK2 PE=1
           SV=1
          Length = 424

 Score = 32.0 bits (71), Expect = 2.8
 Identities = 23/98 (23%), Positives = 36/98 (36%)
 Frame = -2

Query: 331 EGIQEGRALASTSSCHCQNVAWEVISXXXXXXXXXXXPLHVRWLGDRVE*PTVMFHAIEP 152
           E  Q+G     T+   CQ V                  +  + L  R++ PTV  H  + 
Sbjct: 74  EDNQQGDEALDTTKDPCQKVKCSRHKVCIAQGYQRAMCISRKKLEHRIKQPTVKLHGNKD 133

Query: 151 SRCRELQWRSCRCVCATTGVHVTDGCEVMQPATTSQKR 38
           S C+         VC + G   +  C++ Q A  S K+
Sbjct: 134 SICKPCHMAQLASVCGSDGHTYSSVCKLEQQACLSSKQ 171


>sp|Q0V0I4|PAN3_PHANO PAB-dependent poly(A)-specific ribonuclease
           subunit PAN3 OS=Phaeosphaeria nodorum GN=PAN3 PE=3 SV=2
          Length = 669

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 386 SSCRANHLPLHVTASTSDSRKAMKVDGTVFTDRT 487
           S CR  HLP HV     +++K   VD   FT  T
Sbjct: 45  SKCRPPHLPDHVLNQNENAKKRFNVDSPSFTPLT 78
tr_hit_id Q7S2T3
Definition tr|Q7S2T3|Q7S2T3_NEUCR Putative uncharacterized protein OS=Neurospora crassa
Align length 55
Score (bit) 34.7
E-value 5.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951659|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_P22, 5'
         (641 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7S2T3|Q7S2T3_NEUCR Putative uncharacterized protein OS=Neuro...    35   5.1  
tr|Q43061|Q43061_PORCR Carbonic anhydrase OS=Porphyridium cruent...    34   6.6  
tr|Q43060|Q43060_PORCR Carbonic anhydrase OS=Porphyridium cruent...    34   6.6  
tr|Q2HHJ9|Q2HHJ9_CHAGB Putative uncharacterized protein OS=Chaet...    34   6.6  

>tr|Q7S2T3|Q7S2T3_NEUCR Putative uncharacterized protein
           OS=Neurospora crassa GN=NCU09042 PE=4 SV=1
          Length = 1015

 Score = 34.7 bits (78), Expect = 5.1
 Identities = 15/55 (27%), Positives = 30/55 (54%)
 Frame = +3

Query: 465 ERSLRTEQCLTLIPWPSTELHQAYLLLLPFLWWPRKWRLYPWIS*RLAISYSRKT 629
           ++S+   Q +TL P  +T++     +  P +WWP++W   P  + +L++  S  T
Sbjct: 270 DQSIIWSQTVTLPPLSTTDVTLTTTVQKPAIWWPKQWGSQPLYNAQLSVFASNNT 324


>tr|Q43061|Q43061_PORCR Carbonic anhydrase OS=Porphyridium cruentum
           GN=gtPCA2 PE=2 SV=1
          Length = 571

 Score = 34.3 bits (77), Expect = 6.6
 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
 Frame = +1

Query: 526 IKRTCCCSHF-CGGHAS--GDFTLG*VEDWLSHIQ 621
           +KR   C H+ CGG A+  GD  LG +++WL HI+
Sbjct: 451 VKRVVVCGHYACGGCAAALGDSRLGLIDNWLRHIR 485


>tr|Q43060|Q43060_PORCR Carbonic anhydrase OS=Porphyridium cruentum
           GN=gtPCA1 PE=2 SV=1
          Length = 571

 Score = 34.3 bits (77), Expect = 6.6
 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
 Frame = +1

Query: 526 IKRTCCCSHF-CGGHAS--GDFTLG*VEDWLSHIQ 621
           +KR   C H+ CGG A+  GD  LG +++WL HI+
Sbjct: 451 VKRVVVCGHYACGGCAAALGDSRLGLIDNWLRHIR 485


>tr|Q2HHJ9|Q2HHJ9_CHAGB Putative uncharacterized protein
           OS=Chaetomium globosum GN=CHGG_00305 PE=4 SV=1
          Length = 1010

 Score = 34.3 bits (77), Expect = 6.6
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +3

Query: 471 SLRTEQCLTLIPWPSTELHQAYLLLLPFLWWPRKWRLYPWIS*RLAISYSRKT 629
           S+   + +TL P  +TEL  +  +  P +WWPR+W   P  +  L  + +  T
Sbjct: 261 SITISKTVTLAPLSNTELVLSTTIPNPKIWWPRQWGAQPLYTATLTTTLAHTT 313