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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951586
Clone id TST38A01NGRL0011_M21
Library
Length 668
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0011_M21. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
GCTTGGTATGGCTGGAGTTGAACTTGAGGCTGATTATGTTGGAGGCGAGGATATATTAAG
CTTATTGGACTTTGAGATGCAAAATTGCCGTGCTCAACATGCGCTAATGTCTTGTCATCA
ACCTGGTTGTGACGGAAGTGCTTCTGTGGAAGGATGTATATCTTCTAATGGCACTCTCCT
ACAAGCTTCAAAGGCTGAAGCTGATAATCAGGAGGGTGCGATGGACATTGTTTCTCAAAG
GCTGAGTGCTCCATCTATATGTGCAACTGGAGCTGAATATATACCATCTTTGCATCAGGA
AGAGAAACAAACTGACATGGCGTTTTGGTTTACAGATTAGTAGGTTGGATATATCTGTTC
GAGTTCATATTCTTTACTTATTGCTGCAGTATCAAAGCTATATTCATGAATATTCATGGC
ATTCTTTATTTATAGCCGCACCAAACAGATTCTACTCGGTCTTGGCCCACCATGGATAGT
TGTGGCAGGCTATTCCTCTCCAGGAAGTTCACGAGCATTGTGACCTAGCTGTTTTGGAAT
CATTGCAGGCAATGAAGTCATTAGTTTCTCGATCCATGCCACACAGATTGTGAGAGCAAT
TATTGCACATGGGCTTTACACTACACACTAGGCTATTTGGGAGCTTCTGTTACTCAAATG
GCTGGAAG
■■Homology search results ■■ -
sp_hit_id P70047
Definition sp|P70047|MYT1_XENLA Myelin transcription factor 1 OS=Xenopus laevis
Align length 47
Score (bit) 32.3
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951586|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_M21, 5'
         (655 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P70047|MYT1_XENLA Myelin transcription factor 1 OS=Xenopus la...    32   2.2  
sp|Q8CFC2|MYT1_MOUSE Myelin transcription factor 1 OS=Mus muscul...    32   2.2  
sp|Q01538|MYT1_HUMAN Myelin transcription factor 1 OS=Homo sapie...    32   2.2  
sp|Q9QX27|ST18_RAT Suppression of tumorigenicity protein 18 OS=R...    30   8.5  
sp|Q80TY4|ST18_MOUSE Suppression of tumorigenicity protein 18 OS...    30   8.5  
sp|O60284|ST18_HUMAN Suppression of tumorigenicity protein 18 OS...    30   8.5  

>sp|P70047|MYT1_XENLA Myelin transcription factor 1 OS=Xenopus
           laevis GN=myt1 PE=2 SV=1
          Length = 1122

 Score = 32.3 bits (72), Expect = 2.2
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 62  LLDFEMQNCRAQHAL-MSCHQPGCDGSASVEGCISSNGTLLQASKAE 199
           L D  ++N  A H+  + C  PGCDGS  + G  +S+ +L    +A+
Sbjct: 823 LADKSLRNLMAAHSADLKCPTPGCDGSGHITGNYASHRSLSGCPRAK 869


>sp|Q8CFC2|MYT1_MOUSE Myelin transcription factor 1 OS=Mus musculus
           GN=Myt1 PE=1 SV=1
          Length = 1127

 Score = 32.3 bits (72), Expect = 2.2
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 62  LLDFEMQNCRAQHAL-MSCHQPGCDGSASVEGCISSNGTLLQASKAE 199
           L D  ++N  A H+  + C  PGCDGS  + G  +S+ +L    +A+
Sbjct: 828 LADKSLRNLMAAHSADLKCPTPGCDGSGHITGNYASHRSLSGCPRAK 874


>sp|Q01538|MYT1_HUMAN Myelin transcription factor 1 OS=Homo sapiens
           GN=MYT1 PE=1 SV=2
          Length = 1121

 Score = 32.3 bits (72), Expect = 2.2
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +2

Query: 107 MSCHQPGCDGSASVEGCISSNGTLLQASKAEADNQEG--AMDIVSQRLSAP 253
           +SC  PGC GS  V G  S + +L     A+    EG  A  +VS+R S P
Sbjct: 28  LSCPTPGCTGSGHVRGKYSRHRSLQSCPLAKKRKLEGAEAEHLVSKRKSHP 78



 Score = 32.3 bits (72), Expect = 2.2
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 62  LLDFEMQNCRAQHAL-MSCHQPGCDGSASVEGCISSNGTLLQASKAE 199
           L D  ++N  A H+  + C  PGCDGS  + G  +S+ +L    +A+
Sbjct: 826 LADKSLRNLMAAHSADLKCPTPGCDGSGHITGNYASHRSLSGCPRAK 872


>sp|Q9QX27|ST18_RAT Suppression of tumorigenicity protein 18
           OS=Rattus norvegicus GN=St18 PE=2 SV=2
          Length = 1032

 Score = 30.4 bits (67), Expect = 8.5
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +2

Query: 104 LMSCHQPGCDGSASVEGCISSNGTLLQASKAEADNQEGAMDIVSQRLSAPSICATGAEYI 283
           L++C  PGCDGS  V G  +S+ ++     A+    +  M   SQ L  P+    G+ ++
Sbjct: 706 LITCPTPGCDGSGHVTGNYASHRSVSGCPLAD-KTLKSLMAANSQELKCPTPGCDGSGHV 764


>sp|Q80TY4|ST18_MOUSE Suppression of tumorigenicity protein 18
           OS=Mus musculus GN=St18 PE=2 SV=2
          Length = 1045

 Score = 30.4 bits (67), Expect = 8.5
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +2

Query: 104 LMSCHQPGCDGSASVEGCISSNGTLLQASKAEADNQEGAMDIVSQRLSAPSICATGAEYI 283
           L++C  PGCDGS  V G  +S+ ++     A+    +  M   SQ L  P+    G+ ++
Sbjct: 719 LITCPTPGCDGSGHVTGNYASHRSVSGCPLAD-KTLKSLMAANSQELKCPTPGCDGSGHV 777


>sp|O60284|ST18_HUMAN Suppression of tumorigenicity protein 18
           OS=Homo sapiens GN=ST18 PE=1 SV=1
          Length = 1047

 Score = 30.4 bits (67), Expect = 8.5
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +2

Query: 104 LMSCHQPGCDGSASVEGCISSNGTLLQASKAEADNQEGAMDIVSQRLSAPSICATGAEYI 283
           L++C  PGCDGS  V G  +S+ ++     A+    +  M   SQ L  P+    G+ ++
Sbjct: 721 LITCPTPGCDGSGHVTGNYASHRSVSGCPLAD-KTLKSLMAANSQELKCPTPGCDGSGHV 779
tr_hit_id Q1YP11
Definition tr|Q1YP11|Q1YP11_9GAMM Putative permease OS=gamma proteobacterium HTCC2207
Align length 80
Score (bit) 38.1
E-value 0.48
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951586|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_M21, 5'
         (655 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1YP11|Q1YP11_9GAMM Putative permease OS=gamma proteobacteriu...    38   0.48 
tr|B1ZKD3|B1ZKD3_METPB 2-dehydro-3-deoxyphosphogluconate aldolas...    35   4.0  
tr|A5W5B2|A5W5B2_PSEP1 TonB-dependent siderophore receptor OS=Ps...    34   9.0  

>tr|Q1YP11|Q1YP11_9GAMM Putative permease OS=gamma proteobacterium
           HTCC2207 GN=GB2207_03187 PE=4 SV=1
          Length = 257

 Score = 38.1 bits (87), Expect = 0.48
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
 Frame = +2

Query: 374 LLIAAVSKLYS*IFMAFF---IYSRTKQILLGLGPPWIVVAGYSSPGSSRAL*PSCFGII 544
           +++A ++  YS +  +FF        +++L+   P WI+++GY   G SR L       I
Sbjct: 68  IMMAVITNSYSNVVSSFFGSKFQRNIEELLVSPVPSWIILSGYVVGGMSRGLGVGLIVTI 127

Query: 545 AGNEVISFSIHATQIVRAII 604
                  FSIH+  +  AI+
Sbjct: 128 LSLYFADFSIHSLPVTIAIV 147


>tr|B1ZKD3|B1ZKD3_METPB 2-dehydro-3-deoxyphosphogluconate
           aldolase/4-hydroxy-2-oxoglutarate aldolase
           OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB
           13946 / BJ001) GN=Mpop_1962 PE=4 SV=1
          Length = 206

 Score = 35.0 bits (79), Expect = 4.0
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = +2

Query: 140 ASVEGCISSNGTLLQASKAEADNQEGAMDIVSQRLSAP---SICATGAEYIPSL 292
           ASVEG +   GT+L A   +A    GA  +VS  L+AP   +  A+G  Y+P +
Sbjct: 57  ASVEGAVVGAGTVLNARDLDAAIGAGAKFVVSPGLTAPLTEAAIASGVPYLPGV 110


>tr|A5W5B2|A5W5B2_PSEP1 TonB-dependent siderophore receptor
           OS=Pseudomonas putida (strain F1 / ATCC 700007)
           GN=Pput_3196 PE=3 SV=1
          Length = 803

 Score = 33.9 bits (76), Expect = 9.0
 Identities = 26/66 (39%), Positives = 30/66 (45%)
 Frame = +2

Query: 452 LLGLGPPWIVVAGYSSPGSSRAL*PSCFGIIAGNEVISFSIHATQIVRAIIAHGLYTTH* 631
           LLG    W    GYS P  S A     F   +G  VISFS  A   + +   HG Y  H 
Sbjct: 25  LLGTAHAWAEPVGYSIPAGSLAHALDQFADASG-AVISFSHEAVAGLHSKGLHGNYALHQ 83

Query: 632 AIWELL 649
           A+ ELL
Sbjct: 84  ALAELL 89