DK951338 |
Clone id |
TST38A01NGRL0011_C08 |
Library |
TST38 |
Length |
704 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0011_C08. 5' end sequence. |
Accession |
DK951338 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL1391Contig1 |
Sequence |
CAGAGAGCGTCGCGCGAGCTCGGAGTAGTTAAAATTTGTGAAGCTAAAGAATATAGACCT TTGGGCAACGAGACACCTGCTGAAGGGCGACTGTTTTTGGTTAGAAGTGTAGGCGGTCCG GGAGCAGATCAGCAGTTTCCTTCTTTGCTCGGATGACATTGAGACAAACAAGAAATTCCC GACAGATGAGATAATAGACTCTCAAGTATGGCCACAAGCACTGAACCTTTTCGCAGGCTG GTGAAGCTAGTGGCAAGAGCATTCTATGATGATGACATGAATGCAAAGGGAGCAAATAAA CCCAAAACAGAAAAATTTGATAATCGAGGCATTGCAGTGGTGGTTCTTGATGCGCTAACC AGGCGACAGTGGGTTAAGGAGGATGATTTGGCAAAGAATTTACGGCTGCATCCAAAACAG TTAAGGCGAACTCTACGTACTTTAGAGGAAGAAGCATTGATTGTTCGAGAACATCGTCGG GAGACGGCCAAAGGAGTAAAAGCTTATAATGCAGCAATTGCAGCAACCAATGATGGATCA ATGAATCAACGGGAGGGAGAGGAGAAGCAAAAACTCCACACACATTCGTATTGTTGCTTG GATTATGCCCAGGTGTATGACATTGTAAGGTACAGAATACATAGAGCAAAAAAGAAGATC AAAGATGAACTGGAGGACAGAAACACTGTCCAGCATTATCTGTG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q557M8 |
Definition |
sp|Q557M8|T2EA_DICDI General transcription factor IIE subunit 1 OS=Dictyostelium discoideum |
Align length |
154 |
Score (bit) |
53.1 |
E-value |
1.0e-06 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9S7R4 |
Definition |
tr|A9S7R4|A9S7R4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
162 |
Score (bit) |
268.0 |
E-value |
3.0e-70 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK951338|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0011_C08, 5' (704 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9S7R4|A9S7R4_PHYPA Predicted protein OS=Physcomitrella paten... 268 3e-70 tr|B8LLR7|B8LLR7_PICSI Putative uncharacterized protein OS=Picea... 250 7e-65 tr|Q6ZB67|Q6ZB67_ORYSJ Os08g0343300 protein OS=Oryza sativa subs... 235 2e-60 tr|A2YU74|A2YU74_ORYSI Putative uncharacterized protein OS=Oryza... 235 2e-60 tr|B4FWI2|B4FWI2_MAIZE Putative uncharacterized protein OS=Zea m... 229 1e-58 tr|B4FSN5|B4FSN5_MAIZE Putative uncharacterized protein OS=Zea m... 229 2e-58 tr|Q93ZW3|Q93ZW3_ARATH Putative uncharacterized protein At1g0328... 213 1e-53 tr|Q9ZVS9|Q9ZVS9_ARATH F15K9.12 protein OS=Arabidopsis thaliana ... 205 2e-51 tr|Q9SUP2|Q9SUP2_ARATH Putative uncharacterized protein AT4g2034... 178 3e-43 tr|Q6S7C4|Q6S7C4_ARATH TFIIE-alpha 2 (Fragment) OS=Arabidopsis t... 178 3e-43 tr|B8BLY0|B8BLY0_ORYSI Putative uncharacterized protein OS=Oryza... 174 5e-42 tr|Q9SVG6|Q9SVG6_ARATH Putative uncharacterized protein AT4g2081... 154 5e-36 tr|B4FHH9|B4FHH9_MAIZE Putative uncharacterized protein OS=Zea m... 154 5e-36 tr|A5CAZ7|A5CAZ7_VITVI Putative uncharacterized protein OS=Vitis... 122 2e-26 tr|A7R8E9|A7R8E9_VITVI Chromosome undetermined scaffold_2500, wh... 122 3e-26 tr|Q2RAU2|Q2RAU2_ORYSJ Os11g0137500 protein OS=Oryza sativa subs... 119 2e-25 tr|A3C8F6|A3C8F6_ORYSJ Putative uncharacterized protein OS=Oryza... 119 2e-25 tr|A2ZB75|A2ZB75_ORYSI Putative uncharacterized protein OS=Oryza... 119 2e-25 tr|A3C3L3|A3C3L3_ORYSJ Putative uncharacterized protein OS=Oryza... 92 2e-17 tr|Q01FP4|Q01FP4_OSTTA Transcription initiation factor IIE, alph... 82 3e-14 tr|A4RRX3|A4RRX3_OSTLU Predicted protein OS=Ostreococcus lucimar... 80 1e-13 tr|Q0IQ75|Q0IQ75_ORYSJ Os12g0140200 protein OS=Oryza sativa subs... 79 2e-13 tr|B8BLZ9|B8BLZ9_ORYSI Putative uncharacterized protein OS=Oryza... 79 2e-13 tr|A7P2B5|A7P2B5_VITVI Chromosome chr1 scaffold_5, whole genome ... 67 1e-09 tr|B8BIZ7|B8BIZ7_ORYSI Putative uncharacterized protein OS=Oryza... 66 2e-09 tr|B8LCE0|B8LCE0_THAPS Predicted protein OS=Thalassiosira pseudo... 60 1e-07 tr|Q2RAU3|Q2RAU3_ORYSJ Transcription initiation factor IIE, puta... 54 1e-05 tr|A3C8F5|A3C8F5_ORYSJ Putative uncharacterized protein OS=Oryza... 54 1e-05 tr|B7P1M1|B7P1M1_IXOSC Transcription initiation factor iie, alph... 51 6e-05 tr|Q0P4H8|Q0P4H8_XENTR General transcription factor IIE, polypep... 49 3e-04
>tr|A9S7R4|A9S7R4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_105932 PE=4 SV=1 Length = 483
Score = 268 bits (684), Expect = 3e-70 Identities = 127/162 (78%), Positives = 145/162 (89%) Frame = +1
Query: 217 STEPFRRLVKLVARAFYDDDMNAKGANKPKTEKFDNRGIAVVVLDALTRRQWVKEDDLAK 396 S EPFRRLVKLVARAFYD+++ AKG N+ K++K DN+GIAVVVLDALTRRQWVKE+DLAK Sbjct: 2 SIEPFRRLVKLVARAFYDEEIPAKGPNRSKSDKSDNKGIAVVVLDALTRRQWVKEEDLAK 61
Query: 397 NLRLHPKQLRRTLRTLEEEALIVREHRRETAKGVKAYNAAIAATNDGSMNQREGEEKQKL 576 LRLHPKQLRRTLR LEEE LI+REHR+ET KG K YNAA+AA +DG+ ++EGEEK KL Sbjct: 62 KLRLHPKQLRRTLRVLEEEMLIIREHRKETVKGAKVYNAAVAAVSDGTTGEKEGEEKLKL 121
Query: 577 HTHSYCCLDYAQVYDIVRYRIHRAKKKIKDELEDRNTVQHYL 702 HTHSYCCLDYAQVYDIVRYRIHRA+KKIKDELEDRN +Q Y+ Sbjct: 122 HTHSYCCLDYAQVYDIVRYRIHRARKKIKDELEDRNAIQEYV 163
>tr|B8LLR7|B8LLR7_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 480
Score = 250 bits (638), Expect = 7e-65 Identities = 121/162 (74%), Positives = 138/162 (85%) Frame = +1
Query: 217 STEPFRRLVKLVARAFYDDDMNAKGANKPKTEKFDNRGIAVVVLDALTRRQWVKEDDLAK 396 S EPF+RLV+LVARAFYDD + N+PK+ + DNRG+AVVVLDALTRRQWVKEDDLAK Sbjct: 2 SAEPFKRLVRLVARAFYDDT-TTRAENQPKSGRSDNRGMAVVVLDALTRRQWVKEDDLAK 60
Query: 397 NLRLHPKQLRRTLRTLEEEALIVREHRRETAKGVKAYNAAIAATNDGSMNQREGEEKQKL 576 +L+LH KQLRRTLR EEE LI R+HRRETAKG K +NAAIAAT DG N +EGEEK KL Sbjct: 61 DLKLHSKQLRRTLRFFEEERLITRDHRRETAKGAKVFNAAIAATADGQQNGKEGEEKLKL 120
Query: 577 HTHSYCCLDYAQVYDIVRYRIHRAKKKIKDELEDRNTVQHYL 702 HTHSYCCLDYAQ YD+VRYRIHR KK++KDELEDRNT+Q Y+ Sbjct: 121 HTHSYCCLDYAQTYDVVRYRIHRMKKRLKDELEDRNTLQEYI 162
>tr|Q6ZB67|Q6ZB67_ORYSJ Os08g0343300 protein OS=Oryza sativa subsp. japonica GN=OJ1119_B10.8 PE=2 SV=1 Length = 462
Score = 235 bits (599), Expect = 2e-60 Identities = 112/162 (69%), Positives = 134/162 (82%) Frame = +1
Query: 217 STEPFRRLVKLVARAFYDDDMNAKGANKPKTEKFDNRGIAVVVLDALTRRQWVKEDDLAK 396 S EPF RLV+L ARAFYDD ++ KG N+PKT + DNRG+AVVVLDALTRRQWV+E+DLAK Sbjct: 3 SMEPFNRLVRLAARAFYDD-ISMKGDNQPKTSRGDNRGMAVVVLDALTRRQWVREEDLAK 61
Query: 397 NLRLHPKQLRRTLRTLEEEALIVREHRRETAKGVKAYNAAIAATNDGSMNQREGEEKQKL 576 L+LH KQLRR LR EEE L+ R+HR+E+AKG K Y+AA AA DG +EGEEK K+ Sbjct: 62 ALKLHSKQLRRILRFFEEEKLVTRDHRKESAKGAKIYSAAAAAAGDGQSITKEGEEKVKM 121
Query: 577 HTHSYCCLDYAQVYDIVRYRIHRAKKKIKDELEDRNTVQHYL 702 HTHSYCCLDYAQ+ D+VRYRIHR KKK+KDEL+ RNT+QHY+ Sbjct: 122 HTHSYCCLDYAQICDVVRYRIHRMKKKLKDELDSRNTIQHYI 163
>tr|A2YU74|A2YU74_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_28884 PE=4 SV=1 Length = 462
Score = 235 bits (599), Expect = 2e-60 Identities = 112/162 (69%), Positives = 134/162 (82%) Frame = +1
Query: 217 STEPFRRLVKLVARAFYDDDMNAKGANKPKTEKFDNRGIAVVVLDALTRRQWVKEDDLAK 396 S EPF RLV+L ARAFYDD ++ KG N+PKT + DNRG+AVVVLDALTRRQWV+E+DLAK Sbjct: 3 SMEPFNRLVRLAARAFYDD-ISMKGDNQPKTSRGDNRGMAVVVLDALTRRQWVREEDLAK 61
Query: 397 NLRLHPKQLRRTLRTLEEEALIVREHRRETAKGVKAYNAAIAATNDGSMNQREGEEKQKL 576 L+LH KQLRR LR EEE L+ R+HR+E+AKG K Y+AA AA DG +EGEEK K+ Sbjct: 62 ALKLHSKQLRRILRFFEEEKLVTRDHRKESAKGAKIYSAAAAAAGDGQSITKEGEEKVKM 121
Query: 577 HTHSYCCLDYAQVYDIVRYRIHRAKKKIKDELEDRNTVQHYL 702 HTHSYCCLDYAQ+ D+VRYRIHR KKK+KDEL+ RNT+QHY+ Sbjct: 122 HTHSYCCLDYAQICDVVRYRIHRMKKKLKDELDSRNTIQHYI 163
>tr|B4FWI2|B4FWI2_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 460
Score = 229 bits (585), Expect = 1e-58 Identities = 112/162 (69%), Positives = 133/162 (82%) Frame = +1
Query: 217 STEPFRRLVKLVARAFYDDDMNAKGANKPKTEKFDNRGIAVVVLDALTRRQWVKEDDLAK 396 S EPF RLVKL ARAFYDD ++ KG N+PKT + DNRG+AVVVLDALTRR WV+E+DLAK Sbjct: 3 SIEPFNRLVKLAARAFYDD-VSMKGDNQPKTSRGDNRGMAVVVLDALTRRPWVREEDLAK 61
Query: 397 NLRLHPKQLRRTLRTLEEEALIVREHRRETAKGVKAYNAAIAATNDGSMNQREGEEKQKL 576 L+LH KQLRR LR EEE L+ R+HR+E+AK KA+NA AA NDG +EGEEK K+ Sbjct: 62 ALKLHSKQLRRILRFFEEEKLVTRDHRKESAKNAKAHNA--AAANDGQTVAKEGEEKVKM 119
Query: 577 HTHSYCCLDYAQVYDIVRYRIHRAKKKIKDELEDRNTVQHYL 702 HTHSYCCLDYAQ+ D+VRYRIHR KKK+KDEL+ RNT+QHY+ Sbjct: 120 HTHSYCCLDYAQICDVVRYRIHRMKKKLKDELDSRNTIQHYI 161
>tr|B4FSN5|B4FSN5_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 457
Score = 229 bits (583), Expect = 2e-58 Identities = 112/162 (69%), Positives = 133/162 (82%) Frame = +1
Query: 217 STEPFRRLVKLVARAFYDDDMNAKGANKPKTEKFDNRGIAVVVLDALTRRQWVKEDDLAK 396 S EPF RLV+L ARAFYDD ++ KG N+PKT + DNRG+AVVVLDALTRR WV+E+DLAK Sbjct: 3 SIEPFNRLVRLAARAFYDD-VSMKGDNQPKTSRGDNRGMAVVVLDALTRRPWVREEDLAK 61
Query: 397 NLRLHPKQLRRTLRTLEEEALIVREHRRETAKGVKAYNAAIAATNDGSMNQREGEEKQKL 576 L+LH KQLRR LR EEE L+ R+HR+E+AK KA+NA AA NDG +EGEEK KL Sbjct: 62 ALKLHSKQLRRILRFFEEEKLVTRDHRKESAKNAKAHNA--AAANDGQPIAKEGEEKVKL 119
Query: 577 HTHSYCCLDYAQVYDIVRYRIHRAKKKIKDELEDRNTVQHYL 702 HTHSYCCLDYAQ+ D+VRYRIHR KKK+KDEL+ RNT+QHY+ Sbjct: 120 HTHSYCCLDYAQICDVVRYRIHRMKKKLKDELDSRNTIQHYI 161
>tr|Q93ZW3|Q93ZW3_ARATH Putative uncharacterized protein At1g03280 (TFIIE-alpha 1) OS=Arabidopsis thaliana GN=At1g03280 PE=2 SV=1 Length = 479
Score = 213 bits (542), Expect = 1e-53 Identities = 104/163 (63%), Positives = 129/163 (79%) Frame = +1
Query: 211 ATSTEPFRRLVKLVARAFYDDDMNAKGANKPKTEKFDNRGIAVVVLDALTRRQWVKEDDL 390 A +PF +LV+LVARAFYDD K N+ K+ + DNRGIA VVLDAL RRQWV+E+DL Sbjct: 10 AVVLQPFVKLVRLVARAFYDD-YTTKSDNQQKSARSDNRGIAAVVLDALARRQWVREEDL 68
Query: 391 AKNLRLHPKQLRRTLRTLEEEALIVREHRRETAKGVKAYNAAIAATNDGSMNQREGEEKQ 570 AK+L+LH KQLR+ +R EEE LI+R+HR+ETAKG K Y+AA+AAT DG E+K Sbjct: 69 AKDLQLHAKQLRKIIRLFEEEKLIMRDHRKETAKGAKMYSAAVAATTDG-----RAEDKV 123
Query: 571 KLHTHSYCCLDYAQVYDIVRYRIHRAKKKIKDELEDRNTVQHY 699 KLHTHSYCCLDYAQ+ D+VR+R+HR KK++KDELED+NTVQ Y Sbjct: 124 KLHTHSYCCLDYAQICDVVRFRLHRMKKRLKDELEDKNTVQEY 166
>tr|Q9ZVS9|Q9ZVS9_ARATH F15K9.12 protein OS=Arabidopsis thaliana GN=F15K9.12 PE=4 SV=1 Length = 506
Score = 205 bits (522), Expect = 2e-51 Identities = 104/172 (60%), Positives = 129/172 (75%), Gaps = 9/172 (5%) Frame = +1
Query: 211 ATSTEPFRRLVKLVARAFYDDDMNAKGANKPKTEKFDNRGIAVVVLDALTRRQWVKEDDL 390 A +PF +LV+LVARAFYDD K N+ K+ + DNRGIA VVLDAL RRQWV+E+DL Sbjct: 10 AVVLQPFVKLVRLVARAFYDD-YTTKSDNQQKSARSDNRGIAAVVLDALARRQWVREEDL 68
Query: 391 AKNLRLHPKQLRRTLRTLEEEALIVREHRRETAKGVKAYNAAIAATNDGSMNQREGEEKQ 570 AK+L+LH KQLR+ +R EEE LI+R+HR+ETAKG K Y+AA+AAT DG E+K Sbjct: 69 AKDLQLHAKQLRKIIRLFEEEKLIMRDHRKETAKGAKMYSAAVAATTDG-----RAEDKV 123
Query: 571 KLHTHSYCCLDYA---------QVYDIVRYRIHRAKKKIKDELEDRNTVQHY 699 KLHTHSYCCLDYA Q+ D+VR+R+HR KK++KDELED+NTVQ Y Sbjct: 124 KLHTHSYCCLDYAQARFISSFLQICDVVRFRLHRMKKRLKDELEDKNTVQEY 175
>tr|Q9SUP2|Q9SUP2_ARATH Putative uncharacterized protein AT4g20340 OS=Arabidopsis thaliana GN=F9F13.4 PE=4 SV=1 Length = 527
Score = 178 bits (451), Expect = 3e-43 Identities = 88/159 (55%), Positives = 116/159 (72%) Frame = +1
Query: 223 EPFRRLVKLVARAFYDDDMNAKGANKPKTEKFDNRGIAVVVLDALTRRQWVKEDDLAKNL 402 EPF +LV+L+ R FYD+ + N+ K+ K + +G AV+VLDALTRRQWV+E+DLAK + Sbjct: 15 EPFVKLVRLLVRIFYDN-YTPESDNQQKSVK-NVKGSAVIVLDALTRRQWVREEDLAKEV 72
Query: 403 RLHPKQLRRTLRTLEEEALIVREHRRETAKGVKAYNAAIAATNDGSMNQREGEEKQKLHT 582 + + K+LR+ +R EE+ ++R HR+ETAK K Y+ A+ T DG E+ K HT Sbjct: 73 KRNAKELRKLIRHFEEQKFVMRYHRKETAKRAKMYSYAVGGTTDG-----RAEDNVKFHT 127
Query: 583 HSYCCLDYAQVYDIVRYRIHRAKKKIKDELEDRNTVQHY 699 HSYCCLDYAQ+YDIVRY++HR KKK KDELEDRNTVQ Y Sbjct: 128 HSYCCLDYAQIYDIVRYKLHRLKKKFKDELEDRNTVQEY 166
>tr|Q6S7C4|Q6S7C4_ARATH TFIIE-alpha 2 (Fragment) OS=Arabidopsis thaliana GN=At4g20340 PE=2 SV=1 Length = 215
Score = 178 bits (451), Expect = 3e-43 Identities = 88/159 (55%), Positives = 116/159 (72%) Frame = +1
Query: 223 EPFRRLVKLVARAFYDDDMNAKGANKPKTEKFDNRGIAVVVLDALTRRQWVKEDDLAKNL 402 EPF +LV+L+ R FYD+ + N+ K+ K + +G AV+VLDALTRRQWV+E+DLAK + Sbjct: 15 EPFVKLVRLLVRIFYDN-YTPESDNQQKSVK-NVKGSAVIVLDALTRRQWVREEDLAKEV 72
Query: 403 RLHPKQLRRTLRTLEEEALIVREHRRETAKGVKAYNAAIAATNDGSMNQREGEEKQKLHT 582 + + K+LR+ +R EE+ ++R HR+ETAK K Y+ A+ T DG E+ K HT Sbjct: 73 KRNAKELRKLIRHFEEQKFVMRYHRKETAKRAKMYSYAVGGTTDG-----RAEDNVKFHT 127
Query: 583 HSYCCLDYAQVYDIVRYRIHRAKKKIKDELEDRNTVQHY 699 HSYCCLDYAQ+YDIVRY++HR KKK KDELEDRNTVQ Y Sbjct: 128 HSYCCLDYAQIYDIVRYKLHRLKKKFKDELEDRNTVQEY 166
|