DK951326 |
Clone id |
TST38A01NGRL0011_B19 |
Library |
TST38 |
Length |
685 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0011_B19. 5' end sequence. |
Accession |
DK951326 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
- |
Sequence |
TGACGGTGCTGCTGCAGCAGCAGCATTGGACTGCCTGGCCATCCTCGCCTTCCCGGCGTT TGCGTCTCCTCAACAGTGCCCCGCATTGTCTCCTCGGAGCAGATAATGGTAGCTCTTTGG CAGCTGTGGATCTACTCTTCAGAACTCATCCGCAAGGTTTCTCCTTCTCACACGTTCGGC ATCCACAGAGGTCATCATTGAGTGTCCAATGTGTCCTGGATAATGAGGGATCATCTTCAG TTACTGTAGAGCCAAAGTGGAAGCAGAAGCTAGCTGCTGCTGACAATCATGCGGAGATGA CCAGACAGAGGACCTTACTCGTACAAGAAGAATACAGACAAAGGCAGGCAGCTTTGGAAA AGCGGCAGCTGGGTTCATCCAAAGAGATCATCCCTTTGAAGGATTTGGAATTTGTGCCTT ATCTGAATGAAGATGGTTTAATCACCAACTGTAGTGAACCCTCAGCGAAAGCTTGCGTTT ATGCCATTTTTGACAGTGATAGGGTGCTGCACTATATTGGAATTTCGAGGCAGGTTCATT CAAGCATGCGGCTTCACTTTGCCCGTATGCCTTTGAAGTGTTTCTTTGTGAAAGTACAGA ACATTAACAAGCCTAGCCGCTCCCTGCTGGAATTGATCAGGGAGAAATGGACTGAAGAAA ATGGTTCACGTCCAAGTGGGAATGA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q8H7F6 |
Definition |
sp|Q8H7F6|GRS16_ARATH Monothiol glutaredoxin-S16, chloroplastic OS=Arabidopsis thaliana |
Align length |
116 |
Score (bit) |
53.1 |
E-value |
1.0e-06 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK951326|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0011_B19, 5' (685 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q8H7F6|GRS16_ARATH Monothiol glutaredoxin-S16, chloroplastic ... 53 1e-06 sp|Q2QX01|GRS12_ORYSJ Monothiol glutaredoxin-S12, chloroplastic ... 41 0.007 sp|P71083|YGAE_BACSU UPF0421 protein ygaE OS=Bacillus subtilis G... 33 1.8 sp|P29995|ITPR2_RAT Inositol 1,4,5-trisphosphate receptor type 2... 31 7.0 sp|Q9Z329|ITPR2_MOUSE Inositol 1,4,5-trisphosphate receptor type... 31 7.0 sp|Q16206|ENOX2_HUMAN Ecto-NOX disulfide-thiol exchanger 2 OS=Ho... 31 7.0 sp|Q13474|DRP2_HUMAN Dystrophin-related protein 2 OS=Homo sapien... 31 7.0 sp|P22049|VS48_TBRVE Satellite RNA 48 kDa protein OS=Tomato blac... 30 9.1
>sp|Q8H7F6|GRS16_ARATH Monothiol glutaredoxin-S16, chloroplastic OS=Arabidopsis thaliana GN=GRXS16 PE=2 SV=2 Length = 293
Score = 53.1 bits (126), Expect = 1e-06 Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 4/116 (3%) Frame = +3
Query: 348 AALEKRQLGSSKEIIPLKDLEFVPYLNEDGLITNCSEPSAKACVYAIFDSDRVLHYIGIS 527 A +R + + L + E +P D + PSA VYA++D L ++GIS Sbjct: 53 APSRRRSFFIASAVKSLTETELLPITEADSI------PSASG-VYAVYDKSDELQFVGIS 105
Query: 528 RQVHSSMRLHFARMPLKCFFVKVQNINKPSRSLLELIREKWTEEN----GSRPSGN 683 R + +S+ H +P C VKV + +P +++L + W EE+ G P GN Sbjct: 106 RNIAASVSAHLKSVPELCGSVKVGIVEEPDKAVLTQAWKLWIEEHIKVTGKVPPGN 161
>sp|Q2QX01|GRS12_ORYSJ Monothiol glutaredoxin-S12, chloroplastic OS=Oryza sativa subsp. japonica GN=GRXS12 PE=2 SV=1 Length = 285
Score = 40.8 bits (94), Expect = 0.007 Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 7/79 (8%) Frame = +3
Query: 468 KACVYAIFDSDRVLHYIGISRQVHSSMRLHFARMPLK-CFFVKVQNINK--PSRSLLELI 638 K VY ++D L ++GISR V +S+ H ++P C VKV ++ P R++L Sbjct: 75 KPGVYGVYDPAGELQFVGISRNVRASVEGHRRKVPADLCGSVKVSIADEETPDRTVLTNA 134
Query: 639 REKWTEEN----GSRPSGN 683 + W EE+ G P GN Sbjct: 135 WKSWLEEHITATGKAPPGN 153
>sp|P71083|YGAE_BACSU UPF0421 protein ygaE OS=Bacillus subtilis GN=ygaE PE=3 SV=1 Length = 353
Score = 32.7 bits (73), Expect = 1.8 Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%) Frame = -3
Query: 644 LPDQFQQGAARLVN-VLYFHKETLQRHTGKVKPH 546 +P++FQ+ ++ +LY+H+ L R GK+KPH Sbjct: 248 MPEEFQETLTEELDYLLYWHERILMRFVGKIKPH 281
>sp|P29995|ITPR2_RAT Inositol 1,4,5-trisphosphate receptor type 2 OS=Rattus norvegicus GN=Itpr2 PE=2 SV=1 Length = 2701
Score = 30.8 bits (68), Expect = 7.0 Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 2/94 (2%) Frame = +3
Query: 96 GADNG--SSLAAVDLLFRTHPQGFSFSHVRHPQRSSLSVQCVLDNEGSSSVTVEPKWKQK 269 G+ NG S+L VD HP+ ++ R L C ++ + + WK K Sbjct: 21 GSVNGFISTLGLVDDRCVVHPEAGDLTNPPKKFRDCLFKVCPMNRYSAQ----KQYWKAK 76
Query: 270 LAAADNHAEMTRQRTLLVQEEYRQRQAALEKRQL 371 A NH E + L E Q+Q E R+L Sbjct: 77 QAKQGNHTEAALLKKLQHAAELEQKQNESENRKL 110
>sp|Q9Z329|ITPR2_MOUSE Inositol 1,4,5-trisphosphate receptor type 2 OS=Mus musculus GN=Itpr2 PE=1 SV=3 Length = 2701
Score = 30.8 bits (68), Expect = 7.0 Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 2/94 (2%) Frame = +3
Query: 96 GADNG--SSLAAVDLLFRTHPQGFSFSHVRHPQRSSLSVQCVLDNEGSSSVTVEPKWKQK 269 G+ NG S+L VD HP+ ++ R L C ++ + + WK K Sbjct: 21 GSVNGFISTLGLVDDRCVVHPEAGDLANPPKKFRDCLFKVCPMNRYSAQ----KQYWKAK 76
Query: 270 LAAADNHAEMTRQRTLLVQEEYRQRQAALEKRQL 371 A NH E + L E Q+Q E R+L Sbjct: 77 QAKQGNHTEAALLKKLQHAAELEQKQNESENRKL 110
>sp|Q16206|ENOX2_HUMAN Ecto-NOX disulfide-thiol exchanger 2 OS=Homo sapiens GN=ENOX2 PE=1 SV=2 Length = 610
Score = 30.8 bits (68), Expect = 7.0 Identities = 16/53 (30%), Positives = 28/53 (52%) Frame = +3
Query: 204 VQCVLDNEGSSSVTVEPKWKQKLAAADNHAEMTRQRTLLVQEEYRQRQAALEK 362 V+ + +G +P +Q+L + +Q L VQEEY++++A LEK Sbjct: 432 VELLKQEQGKVHREDDPNKEQQLKLLQQALQGMQQHLLKVQEEYKKKEAELEK 484
>sp|Q13474|DRP2_HUMAN Dystrophin-related protein 2 OS=Homo sapiens GN=DRP2 PE=2 SV=2 Length = 957
Score = 30.8 bits (68), Expect = 7.0 Identities = 17/52 (32%), Positives = 25/52 (48%) Frame = +3
Query: 177 RHPQRSSLSVQCVLDNEGSSSVTVEPKWKQKLAAADNHAEMTRQRTLLVQEE 332 +HPQR L VQ VL+ + S + P W AD H+ + + L + E Sbjct: 685 KHPQRGYLPVQSVLEADYSETPASSPMWPH----ADTHSRIEHFASRLAEME 732
>sp|P22049|VS48_TBRVE Satellite RNA 48 kDa protein OS=Tomato black ring virus (strain E) PE=3 SV=1 Length = 419
Score = 30.4 bits (67), Expect = 9.1 Identities = 13/46 (28%), Positives = 23/46 (50%) Frame = +3
Query: 183 PQRSSLSVQCVLDNEGSSSVTVEPKWKQKLAAADNHAEMTRQRTLL 320 P ++ +V C+L NE ++ V+ +P W + + M QR L Sbjct: 302 PSKNQRAVPCLLQNESATVVSAKPDWYAPVKVCTHKQYMKVQRVFL 347
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SSQ0 |
Definition |
tr|A9SSQ0|A9SSQ0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
145 |
Score (bit) |
179.0 |
E-value |
2.0e-43 |
Report |
|