DK951309
Clone id TST38A01NGRL0011_B02
Library
Length 458
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0011_B02. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence
ACACAATTTATTTTAGAAAGGTGCATGGAGCTTCACATTGGGTTATTTAAGAATGACGCA
CATAAACGTGCTACCGGCTTCCTGCACGAAATGTCCACCTGGAATGCGCTGATTGTAGGG
TGTACCGACCATAGCTGTGAAAAGGAGTCCCTATGCTGTTTTCACCGAAGGACTGGCACC
TTGAAAGGCTTGCGACATCATGCAAGATGTTGGCTCAATGGTCCTTTGGACAGTATGTAT
GCTAAATGTGGTGCCCTATAGGTATCCTCTTTGGGATGTTGTCTCATTGATTGTCAACAT
GGCTCTCTCCAAGGAAGCTCAAGGCACCCCAAAAACTAGATGTGGAGGGAAGCCCTTTCT
CCAAATGCAAAGGGAGTGCACATAGACCGGTAGCGGAAGACTTGTCAGCATGTGCTTAAA
AACAACCTGATTGTCCACATGTACACGGACGAACATTG
■■Homology search results ■■ -
sp_hit_id Q9FK93
Definition sp|Q9FK93|PP406_ARATH Pentatricopeptide repeat-containing protein At5g39680 OS=Arabidopsis thaliana
Align length 39
Score (bit) 32.3
E-value 1.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK951309|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_B02, 5'
(458 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9FK93|PP406_ARATH Pentatricopeptide repeat-containing protei... 32 1.0
sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protei... 32 1.0
sp|P51638|CAV3_RAT Caveolin-3 OS=Rattus norvegicus GN=Cav3 PE=1 ... 32 1.7
sp|P51637|CAV3_MOUSE Caveolin-3 OS=Mus musculus GN=Cav3 PE=2 SV=1 32 1.7
sp|P56539|CAV3_HUMAN Caveolin-3 OS=Homo sapiens GN=CAV3 PE=1 SV=1 32 1.7
sp|Q2KI43|CAV3_BOVIN Caveolin-3 OS=Bos taurus GN=CAV3 PE=2 SV=1 32 1.7
sp|Q3ZDQ5|CAV3_PIG Caveolin-3 OS=Sus scrofa GN=CAV3 PE=2 SV=1 31 2.3
sp|P24603|OPSD_LOLFO Rhodopsin OS=Loligo forbesi GN=RHO PE=1 SV=1 30 6.6
sp|P09241|OPSD_OCTDO Rhodopsin OS=Octopus dofleini GN=RHO PE=2 SV=1 29 8.6
sp|Q9YGM8|CAV1_FUGRU Caveolin-1 OS=Fugu rubripes GN=cav1 PE=3 SV=1 29 8.6
sp|P35431|CAV1_CHICK Caveolin-1 OS=Gallus gallus GN=CAV1 PE=2 SV=1 29 8.6

>sp|Q9FK93|PP406_ARATH Pentatricopeptide repeat-containing protein
At5g39680 OS=Arabidopsis thaliana GN=EMB2744 PE=2 SV=1
Length = 710

Score = 32.3 bits (72), Expect = 1.0
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1

Query: 55 DAHKRATGF-LHEMSTWNALIVGCTDHSCEKESLCCFHR 168
DA K +G ++ TWN +I GC+ H +E+L F R
Sbjct: 391 DARKAFSGMTFRDIVTWNTMISGCSHHGLGREALEAFDR 429


>sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein
At4g21300 OS=Arabidopsis thaliana GN=PCMP-E36 PE=2 SV=1
Length = 857

Score = 32.3 bits (72), Expect = 1.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1

Query: 97 TWNALIVGCTDHSCEKESLCCFH 165
+WN++I C +H K+SLC FH
Sbjct: 610 SWNSIIAACGNHGKLKDSLCLFH 632


>sp|P51638|CAV3_RAT Caveolin-3 OS=Rattus norvegicus GN=Cav3 PE=1
SV=1
Length = 151

Score = 31.6 bits (70), Expect = 1.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -1

Query: 146 SFSQLWSVHPTISAFQVDISCRKPVARLCASFLNNPM 36
SF +W+V P I ++ ++I C + LC NP+
Sbjct: 96 SFCHIWAVVPCIKSYLIEIQCISHIYSLCIRTFCNPL 132


>sp|P51637|CAV3_MOUSE Caveolin-3 OS=Mus musculus GN=Cav3 PE=2 SV=1
Length = 151

Score = 31.6 bits (70), Expect = 1.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -1

Query: 146 SFSQLWSVHPTISAFQVDISCRKPVARLCASFLNNPM 36
SF +W+V P I ++ ++I C + LC NP+
Sbjct: 96 SFCHIWAVVPCIKSYLIEIQCISHIYSLCIRTFCNPL 132


>sp|P56539|CAV3_HUMAN Caveolin-3 OS=Homo sapiens GN=CAV3 PE=1 SV=1
Length = 151

Score = 31.6 bits (70), Expect = 1.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -1

Query: 146 SFSQLWSVHPTISAFQVDISCRKPVARLCASFLNNPM 36
SF +W+V P I ++ ++I C + LC NP+
Sbjct: 96 SFCHIWAVVPCIKSYLIEIQCISHIYSLCIRTFCNPL 132


>sp|Q2KI43|CAV3_BOVIN Caveolin-3 OS=Bos taurus GN=CAV3 PE=2 SV=1
Length = 151

Score = 31.6 bits (70), Expect = 1.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -1

Query: 146 SFSQLWSVHPTISAFQVDISCRKPVARLCASFLNNPM 36
SF +W+V P I ++ ++I C + LC NP+
Sbjct: 96 SFCHIWAVVPCIKSYLIEIQCISHIYSLCIRTFCNPL 132


>sp|Q3ZDQ5|CAV3_PIG Caveolin-3 OS=Sus scrofa GN=CAV3 PE=2 SV=1
Length = 151

Score = 31.2 bits (69), Expect = 2.3
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -1

Query: 146 SFSQLWSVHPTISAFQVDISCRKPVARLCASFLNNPM 36
SF +W+V P I ++ ++I C + LC NP+
Sbjct: 96 SFCHIWAVVPCIKSYLIEIQCISHIYSLCIRTFCNPV 132


>sp|P24603|OPSD_LOLFO Rhodopsin OS=Loligo forbesi GN=RHO PE=1 SV=1
Length = 452

Score = 29.6 bits (65), Expect = 6.6
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = +3

Query: 189 LATSCKMLAQWSFGQYVC*MWCPIGILFGMLSH*LSTWLSPRKLKAPQKLDVEGSPFSKC 368
+ SC M W FG C ++ IG +FG++S T +S + +V G P S
Sbjct: 92 MTISCFM-KYWVFGNAACKVYGLIGGIFGLMSIMTMTMIS------IDRYNVIGRPMSAS 144

Query: 369 KGSAHR 386
K +HR
Sbjct: 145 KKMSHR 150


>sp|P09241|OPSD_OCTDO Rhodopsin OS=Octopus dofleini GN=RHO PE=2 SV=1
Length = 455

Score = 29.3 bits (64), Expect = 8.6
Identities = 16/66 (24%), Positives = 32/66 (48%)
Frame = +3

Query: 189 LATSCKMLAQWSFGQYVC*MWCPIGILFGMLSH*LSTWLSPRKLKAPQKLDVEGSPFSKC 368
L T + +W FG+ C ++ +G +FG +S ++ + + + +V G P +
Sbjct: 92 LKTISAFMKKWIFGKVACQLYGLLGGIFGFMS------INTMAMISIDRYNVIGRPMAAS 145

Query: 369 KGSAHR 386
K +HR
Sbjct: 146 KKMSHR 151


>sp|Q9YGM8|CAV1_FUGRU Caveolin-1 OS=Fugu rubripes GN=cav1 PE=3 SV=1
Length = 181

Score = 29.3 bits (64), Expect = 8.6
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = -1

Query: 146 SFSQLWSVHPTISAFQVDISCRKPVARLCASFLNNPM*SSM 24
SF +W+V P + ++ ++I C V +C +P+ +M
Sbjct: 126 SFIHIWAVVPCVKSYLIEIHCISRVYSICVHTFCDPLFEAM 166


tr_hit_id B0MNG8
Definition tr|B0MNG8|B0MNG8_9FIRM Putative uncharacterized protein OS=Eubacterium siraeum DSM 15702
Align length 35
Score (bit) 35.0
E-value 1.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK951309|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_B02, 5'
(458 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B0MNG8|B0MNG8_9FIRM Putative uncharacterized protein OS=Eubac... 35 1.9
tr|Q8ERE7|Q8ERE7_OCEIH D-lactate dehydrogenase OS=Oceanobacillus... 35 2.4
tr|Q8LG72|Q8LG72_ARATH Putative uncharacterized protein OS=Arabi... 34 3.2
tr|Q56Y15|Q56Y15_ARATH Putative uncharacterized protein At4g2762... 34 3.2
tr|Q02AV8|Q02AV8_SOLUE Glucokinase OS=Solibacter usitatus (strai... 33 5.4
tr|Q6D7I6|Q6D7I6_ERWCT Sensor protein OS=Erwinia carotovora subs... 33 7.1

>tr|B0MNG8|B0MNG8_9FIRM Putative uncharacterized protein
OS=Eubacterium siraeum DSM 15702 GN=EUBSIR_01373 PE=4
SV=1
Length = 316

Score = 35.0 bits (79), Expect = 1.9
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = -2

Query: 448 PCTCGQSGCF*AHADKSSATGLCALPLHLEKGLPS 344
PCTCG++GCF A+ SSATGL + + + PS
Sbjct: 173 PCTCGRNGCFEAY---SSATGLVRMTREMIEKYPS 204


>tr|Q8ERE7|Q8ERE7_OCEIH D-lactate dehydrogenase OS=Oceanobacillus
iheyensis GN=OB1357 PE=4 SV=1
Length = 457

Score = 34.7 bits (78), Expect = 2.4
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = -1

Query: 287 MRQHPKEDTYRAPH--LAYILSKGPLS-QHLA*CRKPFKVPV 171
+ QH K+++Y APH LA I K QH+ C FKVP+
Sbjct: 28 LEQHSKDESYHAPHKPLAVIFPKDTTDVQHITRCCSQFKVPI 69


>tr|Q8LG72|Q8LG72_ARATH Putative uncharacterized protein
OS=Arabidopsis thaliana PE=2 SV=1
Length = 325

Score = 34.3 bits (77), Expect = 3.2
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = +1

Query: 61 HKRATGFLHEMSTWN-ALIVGCTDHS----CEKESLCCFHRRTGTLKGLRHHA 204
H ATG L T + GC HS CE+ + CCFH GT G +HA
Sbjct: 54 HSNATGGLKPNGTTDRGRFKGCCLHSNASPCERNNDCCFHCTPGTENGEGNHA 106


>tr|Q56Y15|Q56Y15_ARATH Putative uncharacterized protein At4g27620
(At4g27620) OS=Arabidopsis thaliana GN=At4g27620 PE=2
SV=1
Length = 325

Score = 34.3 bits (77), Expect = 3.2
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = +1

Query: 61 HKRATGFLHEMSTWN-ALIVGCTDHS----CEKESLCCFHRRTGTLKGLRHHA 204
H ATG L T + GC HS CE+ + CCFH GT G +HA
Sbjct: 54 HSNATGGLKPNGTTDRGRFKGCCLHSNASPCERNNDCCFHCTPGTENGEGNHA 106


>tr|Q02AV8|Q02AV8_SOLUE Glucokinase OS=Solibacter usitatus (strain
Ellin6076) GN=Acid_0809 PE=4 SV=1
Length = 314

Score = 33.5 bits (75), Expect = 5.4
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = -2

Query: 457 NVRPCTCGQSGCF*AHADKSSATGLCALPLHLEKGLPSTSSF 332
N PC CG GC HA S+ T + L + L GL S F
Sbjct: 175 NGNPCGCGNQGCLEKHASASAVTAMAKL-MRLGDGLSSKDVF 215


>tr|Q6D7I6|Q6D7I6_ERWCT Sensor protein OS=Erwinia carotovora subsp.
atroseptica GN=kdpD PE=4 SV=1
Length = 910

Score = 33.1 bits (74), Expect = 7.1
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1

Query: 181 LKGLRHHARCWLNGPLDSMYAKCGAL*VSSLGCCLID-CQHGSLQGSSRHPKN*MWRE 351
LK LRHH R + LD+ A+C AL LID H ++ G SRHPK W++
Sbjct: 81 LKHLRHHGRHTVEFDLDAALARCPAL-------ILIDELAHSNVNG-SRHPKR--WQD 128