DK951306
Clone id TST38A01NGRL0011_A23
Library
Length 690
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0011_A23. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence
CAAGGAGCTTCTGCCACGTGTCAACCGGGGGATATGTAGATATATATATATATTTTTGTT
TTCCTTTCTTAACATGAAAGGTAATAGACGATGAAATAACGTCGGTCTAAAATCTATCGT
TTTCCTTTGGAGAGAGTGAGTGGGAATCATCCCGCCAGGGTTCGAAACTCACTCCCCTTT
CGCTTCTCTGCGTGGGCGGAGCTTCGAGCAACTGAACGAAGGGCTTTGCTTAAGCGGAAT
TTCCCTCTTAGGGCTACCGGTCAAAAGCTTCAGGCAGCTCAGACGCTCCTTGAGAAGGAG
ATGCTGCAGATTCTGTTGTAGGTGTGTTCTCTTCACTCCGGTGAAGTGAAGACCGGTGAT
ATGTACAAAGATAGGGGTGATGGGCGTGGTGGAAGCCGTGAATCTATCGATGCTAAGAAG
CGCATTGAGGAGACTCTAGAGAGGACATCTCCTTCGACATCCAAGGGAAATGCAAGGGAA
AAAGATCGTGTTTCTATGGTGCCTGCATCAACTGGTAGACGCCTAGGCTCTGTTGACTTA
AGGCCTACATTTGACAAGACCAAGTATGCAGACGATGGCGAAGAATCAGAGACTGACAGC
GAAGAATCGGATGTTAGTGGATCAGATGGTGACGACACTTCTTGGGTTTCTTGGTTTTGC
GGTTTGAGAGGGAATGAGTTCTTTTGTGAG
■■Homology search results ■■ -
sp_hit_id P40228
Definition sp|P40228|CSK2B_ARATH Casein kinase II subunit beta OS=Arabidopsis thaliana
Align length 107
Score (bit) 36.2
E-value 0.17
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK951306|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_A23, 5'
(690 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P40228|CSK2B_ARATH Casein kinase II subunit beta OS=Arabidops... 36 0.17
sp|P28021|CSK2B_XENLA Casein kinase II subunit beta OS=Xenopus l... 33 1.9
sp|O76485|CSK2B_SPOFR Casein kinase II subunit beta OS=Spodopter... 33 1.9
sp|P67874|CSK2B_RAT Casein kinase II subunit beta OS=Rattus norv... 33 1.9
sp|P67873|CSK2B_RABIT Casein kinase II subunit beta OS=Oryctolag... 33 1.9
sp|P67872|CSK2B_PIG Casein kinase II subunit beta OS=Sus scrofa ... 33 1.9
sp|P67871|CSK2B_MOUSE Casein kinase II subunit beta OS=Mus muscu... 33 1.9
sp|P67870|CSK2B_HUMAN Casein kinase II subunit beta OS=Homo sapi... 33 1.9
sp|P08182|CSK2B_DROME Casein kinase II subunit beta OS=Drosophil... 33 1.9
sp|Q91398|CSK2B_DANRE Casein kinase II subunit beta OS=Danio rer... 33 1.9
sp|P67869|CSK2B_CHICK Casein kinase II subunit beta OS=Gallus ga... 33 1.9
sp|P28548|CSK2B_CAEEL Casein kinase II subunit beta OS=Caenorhab... 33 1.9
sp|P67868|CSK2B_BOVIN Casein kinase II subunit beta OS=Bos tauru... 33 1.9
sp|Q91678|GAT6A_XENLA GATA-binding factor 6-A OS=Xenopus laevis ... 32 4.2
sp|O80507|CSK2E_ARATH Putative casein kinase II subunit beta-4 O... 30 9.4
sp|P40229|CSK2C_ARATH Casein kinase II subunit beta' OS=Arabidop... 30 9.4

>sp|P40228|CSK2B_ARATH Casein kinase II subunit beta OS=Arabidopsis
thaliana GN=CKB1 PE=1 SV=1
Length = 287

Score = 36.2 bits (82), Expect = 0.17
Identities = 29/107 (27%), Positives = 38/107 (35%), Gaps = 8/107 (7%)
Frame = +1

Query: 394 SRESIDAKKRIEETLERTSPSTSKG-NAREKDRVS-------MVPASTGRRLGSVDLRPT 549
SR + +KRI + LER SPSTS+ N + K V+ ++ + D R
Sbjct: 10 SRPEVVDRKRINDALERPSPSTSRQVNGKGKGTVTAATTTANLIGKQQSNNINHRDSRSA 69

Query: 550 FDKTKYAXXXXXXXXXXXXXXXXXXXXXXXXXXXXFCGLRGNEFFCE 690
FC LRGNEFFCE
Sbjct: 70 SLSKNNTVSDDESDTDSEESDVSGSDGEDTSWISWFCNLRGNEFFCE 116


>sp|P28021|CSK2B_XENLA Casein kinase II subunit beta OS=Xenopus
laevis GN=csnk2b PE=1 SV=1
Length = 215

Score = 32.7 bits (73), Expect = 1.9
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1

Query: 655 FCGLRGNEFFCE 690
FCGLRGNEFFCE
Sbjct: 13 FCGLRGNEFFCE 24


>sp|O76485|CSK2B_SPOFR Casein kinase II subunit beta OS=Spodoptera
frugiperda PE=2 SV=1
Length = 221

Score = 32.7 bits (73), Expect = 1.9
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1

Query: 655 FCGLRGNEFFCE 690
FCGLRGNEFFCE
Sbjct: 13 FCGLRGNEFFCE 24


>sp|P67874|CSK2B_RAT Casein kinase II subunit beta OS=Rattus
norvegicus GN=Csnk2b PE=2 SV=1
Length = 215

Score = 32.7 bits (73), Expect = 1.9
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1

Query: 655 FCGLRGNEFFCE 690
FCGLRGNEFFCE
Sbjct: 13 FCGLRGNEFFCE 24


>sp|P67873|CSK2B_RABIT Casein kinase II subunit beta OS=Oryctolagus
cuniculus GN=CSNK2B PE=2 SV=1
Length = 215

Score = 32.7 bits (73), Expect = 1.9
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1

Query: 655 FCGLRGNEFFCE 690
FCGLRGNEFFCE
Sbjct: 13 FCGLRGNEFFCE 24


>sp|P67872|CSK2B_PIG Casein kinase II subunit beta OS=Sus scrofa
GN=CSNK2B PE=2 SV=1
Length = 215

Score = 32.7 bits (73), Expect = 1.9
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1

Query: 655 FCGLRGNEFFCE 690
FCGLRGNEFFCE
Sbjct: 13 FCGLRGNEFFCE 24


>sp|P67871|CSK2B_MOUSE Casein kinase II subunit beta OS=Mus musculus
GN=Csnk2b PE=1 SV=1
Length = 215

Score = 32.7 bits (73), Expect = 1.9
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1

Query: 655 FCGLRGNEFFCE 690
FCGLRGNEFFCE
Sbjct: 13 FCGLRGNEFFCE 24


>sp|P67870|CSK2B_HUMAN Casein kinase II subunit beta OS=Homo sapiens
GN=CSNK2B PE=1 SV=1
Length = 215

Score = 32.7 bits (73), Expect = 1.9
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1

Query: 655 FCGLRGNEFFCE 690
FCGLRGNEFFCE
Sbjct: 13 FCGLRGNEFFCE 24


>sp|P08182|CSK2B_DROME Casein kinase II subunit beta OS=Drosophila
melanogaster GN=CkIIbeta PE=1 SV=2
Length = 235

Score = 32.7 bits (73), Expect = 1.9
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1

Query: 655 FCGLRGNEFFCE 690
FCGLRGNEFFCE
Sbjct: 13 FCGLRGNEFFCE 24


>sp|Q91398|CSK2B_DANRE Casein kinase II subunit beta OS=Danio rerio
GN=csnk2b PE=2 SV=1
Length = 215

Score = 32.7 bits (73), Expect = 1.9
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1

Query: 655 FCGLRGNEFFCE 690
FCGLRGNEFFCE
Sbjct: 13 FCGLRGNEFFCE 24


tr_hit_id A9T768
Definition tr|A9T768|A9T768_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 100
Score (bit) 66.2
E-value 2.0e-09
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK951306|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0011_A23, 5'
(690 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9T768|A9T768_PHYPA Predicted protein OS=Physcomitrella paten... 66 2e-09
tr|A9T5Q0|A9T5Q0_PHYPA Predicted protein OS=Physcomitrella paten... 50 2e-04
tr|B8LPQ3|B8LPQ3_PICSI Putative uncharacterized protein OS=Picea... 44 0.007
tr|A9FB10|A9FB10_SORC5 Putative uncharacterized protein OS=Soran... 39 0.24
tr|A1YBS7|A1YBS7_SORCE Putative uncharacterized protein (Fragmen... 39 0.41
tr|A7R7B2|A7R7B2_VITVI Chromosome undetermined scaffold_1657, wh... 36 2.7
tr|A7PCI2|A7PCI2_VITVI Chromosome chr2 scaffold_11, whole genome... 36 2.7
tr|B8MP81|B8MP81_9EURO Putative uncharacterized protein OS=Talar... 35 3.5
tr|Q16KS7|Q16KS7_AEDAE Putative uncharacterized protein OS=Aedes... 34 7.6
tr|B6PZG5|B6PZG5_BRAFL Putative uncharacterized protein OS=Branc... 34 10.0

>tr|A9T768|A9T768_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_59578 PE=4 SV=1
Length = 298

Score = 66.2 bits (160), Expect = 2e-09
Identities = 38/100 (38%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Frame = +1

Query: 397 RESIDAKKRIEETLERTSPSTSKGN-AREKDRVSMVPAST-GRRLGSVDLRPTFDKTKYA 570
R+ D KKR+E+ ++++SPSTS+G REKDR++ A+T RR + RPT +K KY
Sbjct: 26 RDVTDNKKRLEDGIDKSSPSTSRGGIGREKDRIAAPAATTQSRRNAGHETRPTMEKAKYP 85

Query: 571 XXXXXXXXXXXXXXXXXXXXXXXXXXXXFCGLRGNEFFCE 690
FC LRGNEFFCE
Sbjct: 86 EDAEDSESESEDSDVSASDGEDTSWISWFCSLRGNEFFCE 125


>tr|A9T5Q0|A9T5Q0_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_219176 PE=4 SV=1
Length = 299

Score = 49.7 bits (117), Expect = 2e-04
Identities = 37/103 (35%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Frame = +1

Query: 397 RESIDAKKRIEETLERTSP-STSKGN-AREKDRVSMVPASTGR-RLGSVDLRPTFDKTKY 567
R+ D KKR E + P STSKG REKDR++ + T R +++ RPT +K KY
Sbjct: 24 RDVTDNKKRFEGGIPLLQPPSTSKGLIGREKDRIAAAASKTQTSRNAALEARPTLEKAKY 83

Query: 568 A--XXXXXXXXXXXXXXXXXXXXXXXXXXXXFCGLRGNEFFCE 690
FCGLRGNEFFCE
Sbjct: 84 PEDVAAEDSESESEDSDVSASDGEDTSWISWFCGLRGNEFFCE 126


>tr|B8LPQ3|B8LPQ3_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 297

Score = 44.3 bits (103), Expect = 0.007
Identities = 34/99 (34%), Positives = 40/99 (40%), Gaps = 7/99 (7%)
Frame = +1

Query: 415 KKRIEETL------ERTSPSTSKGNAREKDRVSMVPASTGRRL-GSVDLRPTFDKTKYAX 573
+KRI + L E++ PSTSKG R+S+ S GRR G DKT YA
Sbjct: 29 RKRINDALDKHLHLEKSPPSTSKGL---NGRLSIPSTSAGRRAPGDSRNASALDKTNYAE 85

Query: 574 XXXXXXXXXXXXXXXXXXXXXXXXXXXFCGLRGNEFFCE 690
FC LRGNEFFCE
Sbjct: 86 DVEDSDTDSEESDVSGSDGDDTSWISWFCNLRGNEFFCE 124


>tr|A9FB10|A9FB10_SORC5 Putative uncharacterized protein
OS=Sorangium cellulosum (strain So ce56) GN=sce7795 PE=4
SV=1
Length = 818

Score = 39.3 bits (90), Expect = 0.24
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +1

Query: 136 VSGNHPARVRNSLPFRFSAWAELRATERRALLKRNFPLRATGQKLQAAQ-TLLEKE 300
+ G P R +++LP A+A L ATERR LL+ R G K +AAQ LLEK+
Sbjct: 741 LGGILPERFKDTLPVLRRAFAALGATERRYLLENVLAARKLGDKARAAQAVLLEKD 796


>tr|A1YBS7|A1YBS7_SORCE Putative uncharacterized protein (Fragment)
OS=Sorangium cellulosum PE=4 SV=1
Length = 301

Score = 38.5 bits (88), Expect = 0.41
Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +1

Query: 151 PARVRNSLPFRFSAWAELRATERRALLKRNFPLRATGQKLQAAQ-TLLEKE 300
P R +++LP A+A L ATERR LL+ R G K +AAQ LLEK+
Sbjct: 229 PERFKDTLPVLRRAFAGLGATERRYLLENVLAARKLGDKARAAQAVLLEKD 279


>tr|A7R7B2|A7R7B2_VITVI Chromosome undetermined scaffold_1657, whole
genome shotgun sequence OS=Vitis vinifera
GN=GSVIVT00009906001 PE=4 SV=1
Length = 147

Score = 35.8 bits (81), Expect = 2.7
Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 4/43 (9%)
Frame = +1

Query: 403 SIDAKK---RIEETLERTSPSTSKG-NAREKDRVSMVPASTGR 519
SID K+ +++ LER+SPSTSKG N ++KDRVS G+
Sbjct: 71 SIDRKRINDALDKHLERSSPSTSKGLNGKDKDRVSAQSTLIGK 113


>tr|A7PCI2|A7PCI2_VITVI Chromosome chr2 scaffold_11, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00015874001
PE=4 SV=1
Length = 94

Score = 35.8 bits (81), Expect = 2.7
Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 4/43 (9%)
Frame = +1

Query: 403 SIDAKK---RIEETLERTSPSTSKG-NAREKDRVSMVPASTGR 519
SID K+ +++ LER+SPSTSKG N ++KDRVS G+
Sbjct: 18 SIDRKRINDALDKHLERSSPSTSKGLNGKDKDRVSAQSTLIGK 60


>tr|B8MP81|B8MP81_9EURO Putative uncharacterized protein
OS=Talaromyces stipitatus ATCC 10500 GN=TSTA_105320 PE=4
SV=1
Length = 275

Score = 35.4 bits (80), Expect = 3.5
Identities = 25/69 (36%), Positives = 35/69 (50%)
Frame = +1

Query: 103 RSKIYRFPLERVSGNHPARVRNSLPFRFSAWAELRATERRALLKRNFPLRATGQKLQAAQ 282
R++ R LERV N R+R+ R A + +AT+R L + N LRA +KLQ Q
Sbjct: 18 RAQFARPRLERVDNNPRTRLRDEATAREQA-TQQQATQRATLERENRTLRAQVRKLQHEQ 76

Query: 283 TLLEKEMLQ 309
L + Q
Sbjct: 77 AALREHAAQ 85


>tr|Q16KS7|Q16KS7_AEDAE Putative uncharacterized protein OS=Aedes
aegypti GN=AAEL012890 PE=4 SV=1
Length = 871

Score = 34.3 bits (77), Expect = 7.6
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Frame = -3

Query: 367 CTYHRSSLHRSEENTPTTESAASPSQGASELPEAF-----DR*P*EGNSA*AKPFVQLLE 203
C R+ +E E AASP++ ++ E + P + +++ P V ++E
Sbjct: 6 CVSSRTKSDDDDEEDEAAEIAASPARTMDKIEEEYRVESPPTIPEQPSTSRGLPSVSIIE 65

Query: 202 APPTQRSERGVSFEPWRDDSHSLSPKEN 119
PP R E ++ D HS SP +
Sbjct: 66 VPPDYRGESSRVYDIALDKQHSPSPSSS 93


>tr|B6PZG5|B6PZG5_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_112830 PE=4 SV=1
Length = 842

Score = 33.9 bits (76), Expect = 10.0
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Frame = -3

Query: 352 SSLHRSEENTPTTESAASPSQGASELPEAFDR*P----*EGNSA*AKPFVQLLEAPPTQR 185
+ LH +E +T +T + + S +E E+F P EGN+A K L P R
Sbjct: 748 TGLHTTERSTTSTTGSTTKSDATTEKTESFTTIPTTEKSEGNTASTKTTDDL----PMAR 803

Query: 184 SERGVS---FEPWRDDSHSLSPKE 122
S RGV WRD+ H+ + E
Sbjct: 804 SFRGVMKVVNRDWRDELHNQASDE 827