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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951267
Clone id TST38A01NGRL0010_P06
Library
Length 629
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0010_P06. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
AGAAGAGCTGCAGCAGAAAAATATGGCTTCCCTGCCCATGCAAGCTCTACTCTCATGGCT
GCTGCTGTTGCTGCTTGCAAGCAGCGTGCAGGCAAACTACTACGGCGGCGGATCGAGCCC
CGTGACCAAGCCGCCAGAGTACAAGGCACCCAAGGAGAAGGCCCCTGAGTACAAGCCGCC
CGTATACAAGGCGCCCAAGGAGAAATCCCCTGTGTACAAGCCTCCGATGGAGAAGCCTCC
GATGGAGAAACCTCCGATGGAGAAGCCGCCGATGGAGAAGCCTCCGATGGAGAAGCCGCC
TATGGAGAAACCTCCTATGGAGAAACCTCCGATGGAGAAGCCGCCTATGGAGAAGCCGCC
TATGGAGAAACCTCCGATGGAGAAGCCGCCGATGGAGAAGCCTCCGATGGAGAAGCCGCC
GATGGAGAAGCCGCCTATGGAGAAACCTCCGATGGAGAAGCCGCCGATGGAGAAGCCTCC
GATGGAGAAGCCCCCAGTGTACAAACCCCCGGTGGAGAAGCCACCTGTGTACAAACCCCC
TTTCTACAAGCCCGGCCCCTACTACAAGCACCCCTCCTTCCCTAAGTTCAAATTCCCAAA
ATTCACCATTCCCAAATTCAAGCTGCCTA
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951267|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_P06, 5'
         (629 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done

 ***** No hits found ******
tr_hit_id A7RX60
Definition tr|A7RX60|A7RX60_NEMVE Predicted protein (Fragment) OS=Nematostella vectensis
Align length 35
Score (bit) 37.7
E-value 0.57
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951267|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_P06, 5'
         (629 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7RX60|A7RX60_NEMVE Predicted protein (Fragment) OS=Nematoste...    38   0.57 
tr|A7SCE9|A7SCE9_NEMVE Predicted protein (Fragment) OS=Nematoste...    35   3.7  
tr|Q1N9I5|Q1N9I5_9SPHN Putative uncharacterized protein OS=Sphin...    34   8.2  
tr|Q941W7|Q941W7_ORYSJ Putative uncharacterized protein B1088C09...    34   8.2  

>tr|A7RX60|A7RX60_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g163707 PE=4 SV=1
          Length = 533

 Score = 37.7 bits (86), Expect = 0.57
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = -3

Query: 219 LYTGDFSLGALYTGGLYSGAFSLGALYSGGLVTGL 115
           L TG +  GAL TGG ++GA S G  ++G L TG+
Sbjct: 344 LCTGGYFTGALSTGGYFTGALSTGVCFTGALSTGV 378



 Score = 37.0 bits (84), Expect = 0.97
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = -3

Query: 219 LYTGDFSLGALYTGGLYSGAFSLGALYSGGLVTGL 115
           L TG +  GAL TGG ++GA S G  ++G L TG+
Sbjct: 134 LCTGVYFTGALSTGGYFTGALSTGVYFTGALSTGV 168



 Score = 37.0 bits (84), Expect = 0.97
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = -3

Query: 219 LYTGDFSLGALYTGGLYSGAFSLGALYSGGLVTGL 115
           L TG +  GAL TGG ++GA S G  ++G L TG+
Sbjct: 334 LCTGVYFTGALCTGGYFTGALSTGGYFTGALSTGV 368



 Score = 35.4 bits (80), Expect = 2.8
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = -3

Query: 219 LYTGDFSLGALYTGGLYSGAFSLGALYSGGLVTGL 115
           L+TG +  GAL TG  ++GA S G  ++G L TG+
Sbjct: 34  LFTGVYFTGALCTGVYFTGALSTGVYFTGALSTGV 68



 Score = 34.7 bits (78), Expect = 4.8
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -3

Query: 219 LYTGDFSLGALYTGGLYSGAFSLGALYSGGLVTGL 115
           L TG +  GAL TG  ++GA S G  ++G L TG+
Sbjct: 144 LSTGGYFTGALSTGVYFTGALSTGVYFTGALCTGV 178



 Score = 34.7 bits (78), Expect = 4.8
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -3

Query: 219 LYTGDFSLGALYTGGLYSGAFSLGALYSGGLVTGL 115
           L TG +  GAL TG  ++GA S G  ++G L TG+
Sbjct: 354 LSTGGYFTGALSTGVCFTGALSTGVYFTGALCTGV 388



 Score = 34.3 bits (77), Expect = 6.3
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -3

Query: 216 YTGDFSLGALYTGGLYSGAFSLGALYSGGLVTG 118
           +TG  S G  +TG L +G +  GAL +GG  TG
Sbjct: 120 FTGALSTGVYFTGALCTGVYFTGALSTGGYFTG 152



 Score = 33.9 bits (76), Expect = 8.2
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -3

Query: 219 LYTGDFSLGALYTGGLYSGAFSLGALYSGGLVTGL 115
           L TG +  GAL TG  ++GA S G  ++G L TG+
Sbjct: 4   LCTGVYFTGALSTGVYFTGALSTGVYFTGALFTGV 38



 Score = 33.9 bits (76), Expect = 8.2
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -3

Query: 219 LYTGDFSLGALYTGGLYSGAFSLGALYSGGLVTGL 115
           L TG +  GAL TG  ++GA S G  ++G L TG+
Sbjct: 104 LSTGVYFTGALSTGVYFTGALSTGVYFTGALCTGV 138



 Score = 33.9 bits (76), Expect = 8.2
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -3

Query: 219 LYTGDFSLGALYTGGLYSGAFSLGALYSGGLVTGL 115
           L TG +  GAL TG  ++GA S G  ++G L TG+
Sbjct: 224 LSTGVYFTGALSTGVYFTGALSTGVCFTGALCTGV 258



 Score = 33.9 bits (76), Expect = 8.2
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -3

Query: 219 LYTGDFSLGALYTGGLYSGAFSLGALYSGGLVTGL 115
           L TG +  GAL TG  ++GA S G  ++G L TG+
Sbjct: 294 LSTGVYFTGALSTGVYFTGALSTGVCFTGALCTGV 328



 Score = 33.9 bits (76), Expect = 8.2
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -3

Query: 219 LYTGDFSLGALYTGGLYSGAFSLGALYSGGLVTGL 115
           L TG +  GAL TG  ++GA S G  ++G L TG+
Sbjct: 374 LSTGVYFTGALCTGVCFTGALSTGVYFTGALCTGV 408



 Score = 33.9 bits (76), Expect = 8.2
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -3

Query: 219 LYTGDFSLGALYTGGLYSGAFSLGALYSGGLVTGL 115
           L TG +  GAL TG  ++GA S G  ++G L TG+
Sbjct: 404 LCTGVYFTGALCTGVCFTGALSTGVYFTGALCTGV 438



 Score = 33.9 bits (76), Expect = 8.2
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -3

Query: 219 LYTGDFSLGALYTGGLYSGAFSLGALYSGGLVTGL 115
           L TG +  GAL TG  ++GA S G  ++G L TG+
Sbjct: 424 LSTGVYFTGALCTGVYFTGALSTGVCFTGALCTGV 458


>tr|A7SCE9|A7SCE9_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g113077 PE=4 SV=1
          Length = 172

 Score = 35.0 bits (79), Expect = 3.7
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -1

Query: 218 CTQGISPWAPCIRAACTQGPSPWVPCTLAAWSRGSIRRRSSLPARCLQAA 69
           CT+G S    C R +CT+G      CT  + +RGS  R S     C + +
Sbjct: 82  CTRGSSTRGSCTRGSCTRGSCNRGSCTRGSCTRGSCTRGSCTRGSCTRGS 131


>tr|Q1N9I5|Q1N9I5_9SPHN Putative uncharacterized protein
           OS=Sphingomonas sp. SKA58 GN=SKA58_00265 PE=4 SV=1
          Length = 840

 Score = 33.9 bits (76), Expect = 8.2
 Identities = 22/47 (46%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -1

Query: 134 AAWSRGSIRRRSSLPARCLQAATAAAM---RVELAWAGKPYFSAAAL 3
           AA  RG+I RRS    R L A T A +    + L  AG P FSAA L
Sbjct: 385 AALFRGAIERRSGFDRRSLAAMTLAGLLLVALALGTAGDPLFSAAVL 431


>tr|Q941W7|Q941W7_ORYSJ Putative uncharacterized protein B1088C09.12
           OS=Oryza sativa subsp. japonica GN=B1088C09.12 PE=4 SV=1
          Length = 229

 Score = 33.9 bits (76), Expect = 8.2
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = -1

Query: 176 ACTQGPSPWVPCTLAAWSRGSIRRRSSLPARCLQAATAAA 57
           +C + P P+ P  +  +  G+ RRR  LPA  L A TAAA
Sbjct: 121 SCAERPPPYPPPLVLCYLLGAARRRRVLPALHLSAMTAAA 160