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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951008
Clone id TST38A01NGRL0010_D22
Library
Length 693
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0010_D22. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GGTTACTTTGACCTATGAAGGAAGTGGGAGTTGCAGCATCTTTCCTCCCCAGCGTGAAGG
GAAGAAAAAAGTGTTGACTTCCCTTTTTTTTTTGTAGGGAGAAAGGAGGTAGAGATCAAG
TAAGTGGGGCAACAACTGTCACCCCTGCCAGTTGTTCCACGTATAGGAGATAGGGATGAC
GGGATTTGAACCTGCGACATTTTGTACCCAAAACAAACACGCTACCGAGCTGCGTTACAT
CCCTTTTGGTTGTACTTGATACCATCAACCCCTTGCTTGTTATTCGATCCAATTGATTAT
AATCTTTTCCCACGAATACTGGCTACCGTCGAAGTAGGAATGCATTTTTTGGGAAGCTGC
TAATCCCTGCCCTCTCTTTATTTTAATTCCCACTTTTCATTCTCTACACCACTTCTCGAC
TTAGTATTCTGGAGTCGGGTACTGGAAAAAACTTTATTCTTCTTTCAAGTAAATGTGAGA
ATTTGATTTAGATATAGTTAGATTTTAAGTAGTAAAGCTGGTGAGGATAAAGGCAAGTAG
GTAGGGAAATAAAAAATTGATAAGAAGGAGGATTCCAATGCAACATGTAAAAATATATCT
TTCCACAGCCCCTGTTGTAGCTACAATATGGTTTGGCTTACTGGCTGGTTTATTAATAGA
AATAAATCGATTCTTTCCGGATGCTTTATTATT
■■Homology search results ■■ -
sp_hit_id Q85FK2
Definition sp|Q85FK2|PSAJ_ADICA Photosystem I reaction center subunit IX OS=Adiantum capillus-veneris
Align length 38
Score (bit) 79.0
E-value 2.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951008|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_D22, 5'
         (693 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q85FK2|PSAJ_ADICA Photosystem I reaction center subunit IX OS...    79   2e-14
sp|Q1ACI1|PSAJ_CHAVU Photosystem I reaction center subunit IX OS...    70   1e-11
sp|Q8M9Y5|PSAJ_CHAGL Photosystem I reaction center subunit IX OS...    70   1e-11
sp|A2T353|PSAJ_ANGEV Photosystem I reaction center subunit IX OS...    69   2e-11
sp|Q8WI01|PSAJ_PSINU Photosystem I reaction center subunit IX OS...    69   2e-11
sp|Q6YXM2|PSAJ_PHYPA Photosystem I reaction center subunit IX OS...    69   2e-11
sp|P12191|PSAJ_MARPO Photosystem I reaction center subunit IX OS...    69   2e-11
sp|A6BM27|PSAJ_GNEPA Photosystem I reaction center subunit IX OS...    69   2e-11
sp|Q32RT6|PSAJ_STAPU Photosystem I reaction center subunit IX OS...    69   3e-11
sp|Q32RH5|PSAJ_ZYGCR Photosystem I reaction center subunit IX OS...    68   5e-11
sp|Q5SD35|PSAJ_HUPLU Photosystem I reaction center subunit IX OS...    67   7e-11
sp|A6H5K2|PSAJ_CYCTA Photosystem I reaction center subunit IX OS...    66   2e-10
sp|B2Y1X9|PSAJ_WELMI Photosystem I reaction center subunit IX OS...    65   3e-10
sp|Q2PMR4|PSAJ_SOYBN Photosystem I reaction center subunit IX OS...    64   6e-10
sp|A4GGC6|PSAJ_PHAVU Photosystem I reaction center subunit IX OS...    64   6e-10
sp|A9L9B6|PSAJ_LEMMI Photosystem I reaction center subunit IX OS...    64   6e-10
sp|Q3BAM0|PSAJ_PHAAO Photosystem I reaction center subunit IX OS...    64   1e-09
sp|Q9MUP4|PSAJ_MESVI Photosystem I reaction center subunit IX OS...    64   1e-09
sp|Q7YJV6|PSAJ_CALFG Photosystem I reaction center subunit IX OS...    64   1e-09
sp|Q09G26|PSAJ_PLAOC Photosystem I reaction center subunit IX OS...    63   1e-09
sp|Q06FK6|PSAJ_PELHO Photosystem I reaction center subunit IX OS...    63   1e-09
sp|A4GYT1|PSAJ_POPTR Photosystem I reaction center subunit IX OS...    63   2e-09
sp|Q14FD7|PSAJ_POPAL Photosystem I reaction center subunit IX OS...    63   2e-09
sp|B1NWH0|PSAJ_MANES Photosystem I reaction center subunit IX OS...    63   2e-09
sp|B2XWM5|PSAJ_FAGEA Photosystem I reaction center subunit IX OS...    63   2e-09
sp|A6MMM7|PSAJ_DIOEL Photosystem I reaction center subunit IX OS...    63   2e-09
sp|Q859W0|PSAJ_ANTFO Photosystem I reaction center subunit IX OS...    63   2e-09
sp|Q70XY6|PSAJ_AMBTC Photosystem I reaction center subunit IX OS...    63   2e-09
sp|Q0ZJ00|PSAJ_VITVI Photosystem I reaction center subunit IX OS...    62   2e-09
sp|P12193|PSAJ_TOBAC Photosystem I reaction center subunit IX OS...    62   2e-09

>sp|Q85FK2|PSAJ_ADICA Photosystem I reaction center subunit IX
           OS=Adiantum capillus-veneris GN=psaJ PE=2 SV=2
          Length = 42

 Score = 79.0 bits (193), Expect = 2e-14
 Identities = 38/38 (100%), Positives = 38/38 (100%)
 Frame = +2

Query: 578 MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFPDALL 691
           MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFPDALL
Sbjct: 1   MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFPDALL 38


>sp|Q1ACI1|PSAJ_CHAVU Photosystem I reaction center subunit IX
           OS=Chara vulgaris GN=psaJ PE=3 SV=1
          Length = 41

 Score = 69.7 bits (169), Expect = 1e-11
 Identities = 32/38 (84%), Positives = 36/38 (94%)
 Frame = +2

Query: 578 MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFPDALL 691
           MQ VK YLSTAPV+AT+WFGLLAG+LIEINRFFPDAL+
Sbjct: 1   MQDVKTYLSTAPVLATLWFGLLAGILIEINRFFPDALV 38


>sp|Q8M9Y5|PSAJ_CHAGL Photosystem I reaction center subunit IX
           OS=Chaetosphaeridium globosum GN=psaJ PE=3 SV=1
          Length = 42

 Score = 69.7 bits (169), Expect = 1e-11
 Identities = 32/38 (84%), Positives = 35/38 (92%)
 Frame = +2

Query: 578 MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFPDALL 691
           MQ+ K YLSTAPV+ATIWFG LAGLLIEINRFFPDAL+
Sbjct: 1   MQYFKTYLSTAPVIATIWFGFLAGLLIEINRFFPDALV 38


>sp|A2T353|PSAJ_ANGEV Photosystem I reaction center subunit IX
           OS=Angiopteris evecta GN=psaJ PE=3 SV=1
          Length = 44

 Score = 69.3 bits (168), Expect = 2e-11
 Identities = 32/38 (84%), Positives = 35/38 (92%)
 Frame = +2

Query: 578 MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFPDALL 691
           MQ VK YLSTAPV+AT+WFG LAGLLIEINRFFPDAL+
Sbjct: 1   MQDVKTYLSTAPVLATLWFGFLAGLLIEINRFFPDALI 38


>sp|Q8WI01|PSAJ_PSINU Photosystem I reaction center subunit IX
           OS=Psilotum nudum GN=psaJ PE=3 SV=1
          Length = 42

 Score = 68.9 bits (167), Expect = 2e-11
 Identities = 32/38 (84%), Positives = 35/38 (92%)
 Frame = +2

Query: 578 MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFPDALL 691
           MQ VK YLSTAPV+AT+WFG LAGLLIEINRFFPDAL+
Sbjct: 1   MQDVKTYLSTAPVLATLWFGFLAGLLIEINRFFPDALV 38


>sp|Q6YXM2|PSAJ_PHYPA Photosystem I reaction center subunit IX
           OS=Physcomitrella patens GN=psaJ PE=3 SV=1
          Length = 41

 Score = 68.9 bits (167), Expect = 2e-11
 Identities = 32/38 (84%), Positives = 35/38 (92%)
 Frame = +2

Query: 578 MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFPDALL 691
           MQ VK YLSTAPV+AT+WFG LAGLLIEINRFFPDAL+
Sbjct: 1   MQDVKTYLSTAPVLATLWFGFLAGLLIEINRFFPDALV 38


>sp|P12191|PSAJ_MARPO Photosystem I reaction center subunit IX
           OS=Marchantia polymorpha GN=psaJ PE=3 SV=1
          Length = 42

 Score = 68.9 bits (167), Expect = 2e-11
 Identities = 32/38 (84%), Positives = 35/38 (92%)
 Frame = +2

Query: 578 MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFPDALL 691
           MQ VK YLSTAPV+AT+WFG LAGLLIEINRFFPDAL+
Sbjct: 1   MQDVKTYLSTAPVLATLWFGFLAGLLIEINRFFPDALV 38


>sp|A6BM27|PSAJ_GNEPA Photosystem I reaction center subunit IX
           OS=Gnetum parvifolium GN=psaJ PE=3 SV=1
          Length = 43

 Score = 68.9 bits (167), Expect = 2e-11
 Identities = 32/37 (86%), Positives = 34/37 (91%)
 Frame = +2

Query: 578 MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFPDAL 688
           MQ +K YLSTAPV+AT WFGLLAGLLIEINRFFPDAL
Sbjct: 1   MQDIKTYLSTAPVLATFWFGLLAGLLIEINRFFPDAL 37


>sp|Q32RT6|PSAJ_STAPU Photosystem I reaction center subunit IX
           OS=Staurastrum punctulatum GN=psaJ PE=3 SV=1
          Length = 42

 Score = 68.6 bits (166), Expect = 3e-11
 Identities = 32/38 (84%), Positives = 35/38 (92%)
 Frame = +2

Query: 578 MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFPDALL 691
           MQ VK YLSTAPV+A IWFG+LAGLLIEINRFFPDAL+
Sbjct: 1   MQDVKTYLSTAPVLAAIWFGILAGLLIEINRFFPDALV 38


>sp|Q32RH5|PSAJ_ZYGCR Photosystem I reaction center subunit IX
           OS=Zygnema circumcarinatum GN=psaJ PE=3 SV=1
          Length = 42

 Score = 67.8 bits (164), Expect = 5e-11
 Identities = 31/38 (81%), Positives = 35/38 (92%)
 Frame = +2

Query: 578 MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFPDALL 691
           MQ+VK YLSTAPV+A IWF +LAGLLIEINRFFPDAL+
Sbjct: 1   MQYVKTYLSTAPVLAAIWFAILAGLLIEINRFFPDALI 38
tr_hit_id B7ZI94
Definition tr|B7ZI94|B7ZI94_GNEPA Photosystem I subunit IX OS=Gnetum parvifolium
Align length 37
Score (bit) 68.9
E-value 3.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951008|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_D22, 5'
         (693 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7ZI94|B7ZI94_GNEPA Photosystem I subunit IX OS=Gnetum parvif...    69   3e-10
tr|B3IWG8|B3IWG8_TAKLE Photosystem I subunit IX OS=Takakia lepid...    67   1e-09
tr|B7ZIH4|B7ZIH4_EPHEU Photosystem I subunit IX OS=Ephedra equis...    66   2e-09
tr|Q4FFL9|Q4FFL9_GINBI Photosystem I subunit IX (Fragment) OS=Gi...    66   2e-09
tr|A9QB35|A9QB35_9SPER Photosystem I subunit IX (Fragment) OS=Cy...    66   2e-09
tr|B7ZI29|B7ZI29_WELMI Photosystem I subunit IX OS=Welwitschia m...    65   4e-09
tr|Q4FFL5|Q4FFL5_9ASPA Photosystem I subunit IX (Fragment) OS=Yu...    64   1e-08
tr|B6RRE9|B6RRE9_9CARY PSI reaction centre subunit IX OS=Heliosp...    64   1e-08
tr|B7T458|B7T458_9ROSI Photosystem I subunit IX OS=Pelargonium c...    63   2e-08
tr|B7T3J5|B7T3J5_9ROSI Photosystem I subunit IX OS=Geranium palm...    63   2e-08
tr|B7T3C4|B7T3C4_9ROSI Photosystem I subunit IX OS=Geranium macr...    63   2e-08
tr|B7T354|B7T354_9ROSI Photosystem I subunit IX OS=Geranium caro...    63   2e-08
tr|Q06R45|Q06R45_9LAMI PSI reaction center subunit IX OS=Forsyth...    62   3e-08
tr|Q06R19|Q06R19_9LAMI PSI reaction center subunit IX OS=Jasminu...    62   3e-08
tr|Q06QZ2|Q06QZ2_9LAMI PSI reaction center subunit IX OS=Jasminu...    62   3e-08
tr|Q06QW6|Q06QW6_9LAMI PSI reaction center subunit IX OS=Jasminu...    62   3e-08
tr|Q06QT7|Q06QT7_9LAMI PSI reaction center subunit IX OS=Menodor...    62   3e-08
tr|B7T2Y3|B7T2Y3_EROTE Photosystem I subunit IX OS=Erodium texan...    62   3e-08
tr|B7T2R2|B7T2R2_9ROSI Photosystem I subunit IX OS=Erodium chrys...    62   3e-08
tr|B2D073|B2D073_OLEEU Photosystem II protein J OS=Olea europaea...    62   3e-08
tr|B0LP54|B0LP54_9CARY PSI reaction centre subunit IX OS=Silene ...    62   3e-08
tr|B0LP33|B0LP33_9CARY PSI reaction centre subunit IX OS=Silene ...    62   3e-08
tr|A7NVL0|A7NVL0_VITVI PSI reaction centre subunit IX OS=Vitis v...    62   3e-08
tr|B0LP12|B0LP12_9CARY PSI reaction centre subunit IX OS=Silene ...    62   3e-08
tr|B0LNZ4|B0LNZ4_9CARY PSI reaction centre subunit IX OS=Silene ...    62   3e-08
tr|B0LNX0|B0LNX0_9CARY PSI reaction centre subunit IX OS=Silene ...    62   3e-08
tr|B0LNU9|B0LNU9_9CARY PSI reaction centre subunit IX OS=Silene ...    62   3e-08
tr|B0LNS9|B0LNS9_9CARY PSI reaction centre subunit IX OS=Silene ...    62   3e-08
tr|B0LNQ7|B0LNQ7_SILLA PSI reaction centre subunit IX OS=Silene ...    62   3e-08
tr|B0LNP3|B0LNP3_SILCO PSI reaction centre subunit IX OS=Silene ...    62   3e-08

>tr|B7ZI94|B7ZI94_GNEPA Photosystem I subunit IX OS=Gnetum
           parvifolium GN=psaJ PE=4 SV=1
          Length = 43

 Score = 68.9 bits (167), Expect = 3e-10
 Identities = 32/37 (86%), Positives = 34/37 (91%)
 Frame = +2

Query: 578 MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFPDAL 688
           MQ +K YLSTAPV+AT WFGLLAGLLIEINRFFPDAL
Sbjct: 1   MQDIKTYLSTAPVLATFWFGLLAGLLIEINRFFPDAL 37


>tr|B3IWG8|B3IWG8_TAKLE Photosystem I subunit IX OS=Takakia
           lepidozioides GN=psaJ PE=4 SV=1
          Length = 42

 Score = 67.0 bits (162), Expect = 1e-09
 Identities = 31/38 (81%), Positives = 34/38 (89%)
 Frame = +2

Query: 578 MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFPDALL 691
           MQ VK YLSTAPV+AT+W G LAGLLIEINRFFPDAL+
Sbjct: 1   MQDVKTYLSTAPVLATLWLGFLAGLLIEINRFFPDALI 38


>tr|B7ZIH4|B7ZIH4_EPHEU Photosystem I subunit IX OS=Ephedra
           equisetina GN=psaJ PE=4 SV=1
          Length = 43

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 30/37 (81%), Positives = 34/37 (91%)
 Frame = +2

Query: 578 MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFPDAL 688
           MQ++K YLSTAPV+AT+WFG LAG LIEINRFFPDAL
Sbjct: 1   MQYIKKYLSTAPVLATLWFGSLAGFLIEINRFFPDAL 37


>tr|Q4FFL9|Q4FFL9_GINBI Photosystem I subunit IX (Fragment)
           OS=Ginkgo biloba GN=psaJ PE=4 SV=1
          Length = 44

 Score = 65.9 bits (159), Expect = 2e-09
 Identities = 30/37 (81%), Positives = 34/37 (91%)
 Frame = +2

Query: 578 MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFPDAL 688
           M+ +KIYLS APV+AT+WFG LAGLLIEINRFFPDAL
Sbjct: 1   MRDIKIYLSVAPVLATLWFGSLAGLLIEINRFFPDAL 37


>tr|A9QB35|A9QB35_9SPER Photosystem I subunit IX (Fragment) OS=Cycas
           micronesica GN=psaJ PE=4 SV=1
          Length = 44

 Score = 65.9 bits (159), Expect = 2e-09
 Identities = 30/37 (81%), Positives = 34/37 (91%)
 Frame = +2

Query: 578 MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFPDAL 688
           M+ +K YLSTAPV+AT+WFG LAGLLIEINRFFPDAL
Sbjct: 1   MRDIKTYLSTAPVLATLWFGSLAGLLIEINRFFPDAL 37


>tr|B7ZI29|B7ZI29_WELMI Photosystem I subunit IX OS=Welwitschia
           mirabilis GN=psaJ PE=4 SV=1
          Length = 44

 Score = 65.1 bits (157), Expect = 4e-09
 Identities = 30/37 (81%), Positives = 33/37 (89%)
 Frame = +2

Query: 578 MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFPDAL 688
           MQ +K YLSTAPV+AT+WF  LAGLLIEINRFFPDAL
Sbjct: 1   MQDIKTYLSTAPVLATLWFSSLAGLLIEINRFFPDAL 37


>tr|Q4FFL5|Q4FFL5_9ASPA Photosystem I subunit IX (Fragment) OS=Yucca
           schidigera GN=psaJ PE=4 SV=1
          Length = 44

 Score = 63.5 bits (153), Expect = 1e-08
 Identities = 29/37 (78%), Positives = 32/37 (86%)
 Frame = +2

Query: 578 MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFPDAL 688
           MQ +K YLSTAPV+ T+WFG LAGLLIEINR FPDAL
Sbjct: 1   MQDIKTYLSTAPVLTTLWFGSLAGLLIEINRLFPDAL 37


>tr|B6RRE9|B6RRE9_9CARY PSI reaction centre subunit IX
           OS=Heliosperma alpestre GN=psaJ PE=4 SV=1
          Length = 46

 Score = 63.5 bits (153), Expect = 1e-08
 Identities = 28/37 (75%), Positives = 34/37 (91%)
 Frame = +2

Query: 578 MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFPDAL 688
           M+++K YLS APV++T+WFG LAGLLIEINRFFPDAL
Sbjct: 1   MRNIKTYLSVAPVLSTLWFGSLAGLLIEINRFFPDAL 37


>tr|B7T458|B7T458_9ROSI Photosystem I subunit IX OS=Pelargonium
           cotyledonis GN=psaJ PE=4 SV=1
          Length = 44

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 29/37 (78%), Positives = 33/37 (89%)
 Frame = +2

Query: 578 MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFPDAL 688
           M+ +K YLS APV++TIWFG LAGLLIEINRFFPDAL
Sbjct: 1   MRDLKTYLSAAPVLSTIWFGALAGLLIEINRFFPDAL 37


>tr|B7T3J5|B7T3J5_9ROSI Photosystem I subunit IX OS=Geranium
           palmatum GN=psaJ PE=4 SV=1
          Length = 44

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 28/37 (75%), Positives = 33/37 (89%)
 Frame = +2

Query: 578 MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFPDAL 688
           M+ +K YLS APV++T+WFG LAGLLIEINRFFPDAL
Sbjct: 1   MRDLKTYLSAAPVISTLWFGALAGLLIEINRFFPDAL 37