DK951002
Clone id TST38A01NGRL0010_D16
Library
Length 619
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0010_D16. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence
GCTACCTTGTCACATGGAGTTAATATCATACTTTTTTTTTTTTTTTCTTTCTCTGTTCCC
CTTCTTCACTCAGTAAGGATAGAGAAATAAAGGATAAATAAATAGATTTGATTGATTACC
AGCCTCGCTTCAGTTTGTAGGAACTTACATTCAGCGATCGTCGCTAAATACGTACTATCT
GATGCTGATTTTGACAAATAGTTTCACATCAATTGATTGAAACGAGAGCTATTTATATAT
ACCATACCATTTCAAAAACAGGCAGAGAATCTTTTCGACACTTAACTTAAATATATTTGT
CAAAATAGATAGATAAGATAGAGAAAAAATATCTATCTATTAAATTAAGGAGAAGTAATG
AATCTAGAAATAATCACACAACTCGTCGTACTCACACTTGTAGCTGCATCGGGACCGTTA
GTAATTGCACTATTGGCTATCCGTAAAGGTAATTTATGAGATTGTTCCGCAATTAATTTT
GTATTTTACAGGGATTCATTCAATTCATAAGAAATGGGAAAGGGGGGGGGGGGGAGGGGG
CTCCCTCTATACCAATGCAGATATGTTGATTTGTGCAAGTCTCAACAAACATTGTGCAAT
TAATCTCTCTATTTACATC
■■Homology search results ■■ -
sp_hit_id Q85FN5
Definition sp|Q85FN5|YCF12_ADICA Photosystem II reaction center protein ycf12 OS=Adiantum capillus-veneris
Align length 33
Score (bit) 62.4
E-value 2.0e-09
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK951002|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_D16, 5'
(569 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q85FN5|YCF12_ADICA Photosystem II reaction center protein ycf... 62 2e-09
sp|A6H5F0|YCF12_CYCTA Photosystem II reaction center protein ycf... 54 7e-07
sp|P31560|YCF12_MARPO Photosystem II reaction center protein ycf... 53 1e-06
sp|Q85AJ6|YCF12_ANTFO Photosystem II reaction center protein ycf... 53 1e-06
sp|A2T316|YCF12_ANGEV Photosystem II reaction center protein ycf... 53 1e-06
sp|P61051|YCF12_PHYPA Photosystem II reaction center protein ycf... 51 5e-06
sp|Q32RP1|YCF12_ZYGCR Photosystem II reaction center protein ycf... 50 6e-06
sp|P41600|YCF12_PINTH Photosystem II reaction center protein ycf... 49 2e-05
sp|A4QM02|YCF12_PINKO Photosystem II reaction center protein ycf... 49 2e-05
sp|Q5SCX7|YCF12_HUPLU Photosystem II reaction center protein ycf... 49 2e-05
sp|Q8M9Z7|YCF12_CHAGL Photosystem II reaction center protein ycf... 48 3e-05
sp|Q32RW9|YCF12_STAPU Photosystem II reaction center protein ycf... 48 4e-05
sp|Q19V96|YCF12_CHLAT Photosystem II reaction center protein ycf... 46 1e-04
sp|B2Y1W3|YCF12_WELMI Photosystem II reaction center protein ycf... 46 1e-04
sp|Q9MS72|YCF12_LEPBU Photosystem II reaction center protein ycf... 46 1e-04
sp|Q8WI31|YCF12_PSINU Photosystem II reaction center protein ycf... 45 2e-04
sp|B0YPM6|YCF12_ANEMR Photosystem II reaction center protein ycf... 45 2e-04
sp|Q9MS66|YCF12_EUGMU Photosystem II reaction center protein ycf... 44 7e-04
sp|P56328|YCF12_CHLVU Photosystem II reaction center protein ycf... 43 0.001
sp|Q1KVW3|YCF12_SCEOB Photosystem II reaction center protein ycf... 42 0.002
sp|P48256|YCF12_CYAPA Photosystem II reaction center protein ycf... 42 0.002
sp|Q1ACL9|YCF12_CHAVU Photosystem II reaction center protein ycf... 42 0.002
sp|Q9MS60|YCF12_EUGSA Photosystem II reaction center protein ycf... 42 0.003
sp|Q9MS63|YCF12_EUGMY Photosystem II reaction center protein ycf... 42 0.003
sp|Q8DJI1|YCF12_THEEB Photosystem II reaction center protein ycf... 41 0.005
sp|Q9MUS3|YCF12_MESVI Photosystem II reaction center protein ycf... 41 0.005
sp|Q20EY4|YCF12_OLTVI Photosystem II reaction center protein ycf... 40 0.006
sp|P31559|YCF12_EUGGR Photosystem II reaction center protein ycf... 40 0.006
sp|Q9MS69|YCF12_EUGDE Photosystem II reaction center protein ycf... 40 0.008
sp|A6MVU9|YCF12_RHDSA Photosystem II reaction center protein ycf... 39 0.014

>sp|Q85FN5|YCF12_ADICA Photosystem II reaction center protein ycf12
OS=Adiantum capillus-veneris GN=ycf12 PE=2 SV=1
Length = 33

Score = 62.4 bits (150), Expect = 2e-09
Identities = 33/33 (100%), Positives = 33/33 (100%)
Frame = +2

Query: 308 MNLEIITQLVVLTLVAASGPLVIALLAIRKGNL 406
MNLEIITQLVVLTLVAASGPLVIALLAIRKGNL
Sbjct: 1 MNLEIITQLVVLTLVAASGPLVIALLAIRKGNL 33


>sp|A6H5F0|YCF12_CYCTA Photosystem II reaction center protein ycf12
OS=Cycas taitungensis GN=ycf12 PE=3 SV=1
Length = 33

Score = 53.5 bits (127), Expect = 7e-07
Identities = 25/33 (75%), Positives = 29/33 (87%)
Frame = +2

Query: 308 MNLEIITQLVVLTLVAASGPLVIALLAIRKGNL 406
MNLE++ QL VLTL+ SGPLVIALLA+RKGNL
Sbjct: 1 MNLEVLAQLTVLTLIVISGPLVIALLAVRKGNL 33


>sp|P31560|YCF12_MARPO Photosystem II reaction center protein ycf12
OS=Marchantia polymorpha GN=ycf12 PE=3 SV=1
Length = 33

Score = 52.8 bits (125), Expect = 1e-06
Identities = 26/33 (78%), Positives = 28/33 (84%)
Frame = +2

Query: 308 MNLEIITQLVVLTLVAASGPLVIALLAIRKGNL 406
MNLE+I QL VL L+ ASGPLVIALLA RKGNL
Sbjct: 1 MNLEVIAQLTVLALIVASGPLVIALLAARKGNL 33


>sp|Q85AJ6|YCF12_ANTFO Photosystem II reaction center protein ycf12
OS=Anthoceros formosae GN=ycf12 PE=2 SV=1
Length = 33

Score = 52.8 bits (125), Expect = 1e-06
Identities = 27/33 (81%), Positives = 28/33 (84%)
Frame = +2

Query: 308 MNLEIITQLVVLTLVAASGPLVIALLAIRKGNL 406
MNLEII QL VL L+ ASGPLVIALLA RKGNL
Sbjct: 1 MNLEIIAQLTVLALIIASGPLVIALLAARKGNL 33


>sp|A2T316|YCF12_ANGEV Photosystem II reaction center protein ycf12
OS=Angiopteris evecta GN=ycf12 PE=3 SV=1
Length = 33

Score = 52.8 bits (125), Expect = 1e-06
Identities = 25/33 (75%), Positives = 28/33 (84%)
Frame = +2

Query: 308 MNLEIITQLVVLTLVAASGPLVIALLAIRKGNL 406
MNLEI+ QL VL L+ SGPLVIALLA+RKGNL
Sbjct: 1 MNLEIVAQLTVLALIVVSGPLVIALLAVRKGNL 33


>sp|P61051|YCF12_PHYPA Photosystem II reaction center protein ycf12
OS=Physcomitrella patens GN=ycf12 PE=3 SV=1
Length = 33

Score = 50.8 bits (120), Expect = 5e-06
Identities = 24/33 (72%), Positives = 27/33 (81%)
Frame = +2

Query: 308 MNLEIITQLVVLTLVAASGPLVIALLAIRKGNL 406
MNLE+I QL+ L L+ SGPLVIALLA RKGNL
Sbjct: 1 MNLEVIAQLIALALIVGSGPLVIALLAARKGNL 33


>sp|Q32RP1|YCF12_ZYGCR Photosystem II reaction center protein ycf12
OS=Zygnema circumcarinatum GN=ycf12 PE=3 SV=1
Length = 33

Score = 50.4 bits (119), Expect = 6e-06
Identities = 23/33 (69%), Positives = 27/33 (81%)
Frame = +2

Query: 308 MNLEIITQLVVLTLVAASGPLVIALLAIRKGNL 406
MNLE++ QL VL L+ SGPLVI LLA+RKGNL
Sbjct: 1 MNLEVVAQLTVLALIVVSGPLVIGLLALRKGNL 33


>sp|P41600|YCF12_PINTH Photosystem II reaction center protein ycf12
OS=Pinus thunbergii GN=ycf12 PE=3 SV=1
Length = 33

Score = 48.5 bits (114), Expect = 2e-05
Identities = 24/33 (72%), Positives = 27/33 (81%)
Frame = +2

Query: 308 MNLEIITQLVVLTLVAASGPLVIALLAIRKGNL 406
M+LE+I QL VLTL+ SGPLVI L AIRKGNL
Sbjct: 1 MDLEVIAQLTVLTLMVVSGPLVIVLSAIRKGNL 33


>sp|A4QM02|YCF12_PINKO Photosystem II reaction center protein ycf12
OS=Pinus koraiensis GN=ycf12 PE=3 SV=1
Length = 33

Score = 48.5 bits (114), Expect = 2e-05
Identities = 24/33 (72%), Positives = 27/33 (81%)
Frame = +2

Query: 308 MNLEIITQLVVLTLVAASGPLVIALLAIRKGNL 406
M+LE+I QL VLTL+ SGPLVI L AIRKGNL
Sbjct: 1 MDLEVIAQLTVLTLMVVSGPLVIVLSAIRKGNL 33


>sp|Q5SCX7|YCF12_HUPLU Photosystem II reaction center protein ycf12
OS=Huperzia lucidula GN=ycf12 PE=3 SV=1
Length = 33

Score = 48.5 bits (114), Expect = 2e-05
Identities = 24/33 (72%), Positives = 26/33 (78%)
Frame = +2

Query: 308 MNLEIITQLVVLTLVAASGPLVIALLAIRKGNL 406
MNLE+I QL VL L+ SGPLVIAL A RKGNL
Sbjct: 1 MNLEVIAQLTVLALIVISGPLVIALSAARKGNL 33


tr_hit_id B3U0E1
Definition tr|B3U0E1|B3U0E1_9FILI Ycf12 OS=Archangiopteris itoi
Align length 33
Score (bit) 52.8
E-value 1.0e-05
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK951002|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_D16, 5'
(569 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B3U0E1|B3U0E1_9FILI Ycf12 OS=Archangiopteris itoi PE=4 SV=1 53 1e-05
tr|B3U0D9|B3U0D9_9FILI Ycf12 OS=Angiopteris smithii PE=4 SV=1 53 1e-05
tr|B3U0D5|B3U0D5_9FILI Ycf12 OS=Angiopteris caudatiformis PE=4 SV=1 53 1e-05
tr|B3U0D3|B3U0D3_9FILI Ycf12 OS=Angiopteris sp. China PE=4 SV=1 53 1e-05
tr|B3U0D1|B3U0D1_9FILI Ycf12 OS=Angiopteris durvilleana PE=4 SV=1 53 1e-05
tr|B3U0C7|B3U0C7_9FILI Ycf12 OS=Angiopteris boninensis PE=4 SV=1 53 1e-05
tr|B3U0B9|B3U0B9_9FILI Ycf12 OS=Angiopteris angustifolia PE=4 SV=1 53 1e-05
tr|B3U0B5|B3U0B5_ANGLY Ycf12 OS=Angiopteris lygodiifolia PE=4 SV=1 53 1e-05
tr|B3U0B3|B3U0B3_9FILI Ycf12 OS=Angiopteris hypoleuca PE=4 SV=1 53 1e-05
tr|B3U0B1|B3U0B1_9FILI Ycf12 OS=Angiopteris fokiensis PE=4 SV=1 53 1e-05
tr|B3U077|B3U077_ANGEV Ycf12 OS=Angiopteris evecta PE=4 SV=1 53 1e-05
tr|B3U073|B3U073_9FILI Ycf12 OS=Marattia purpurascens PE=4 SV=1 53 1e-05
tr|B3U053|B3U053_9FILI Ycf12 OS=Marattia smithii PE=4 SV=1 53 1e-05
tr|B3U023|B3U023_9FILI Ycf12 OS=Marattia kaulfussii PE=4 SV=1 53 1e-05
tr|B3U020|B3U020_9FILI Ycf12 OS=Marattia laevis PE=4 SV=1 53 1e-05
tr|B3U016|B3U016_9FILI Ycf12 OS=Christensenia aesculifolia PE=4 ... 53 1e-05
tr|B3U014|B3U014_9FILI Ycf12 OS=Danaea wendlandii PE=4 SV=1 53 1e-05
tr|B3U008|B3U008_9FILI Ycf12 OS=Danaea nodosa PE=4 SV=1 53 1e-05
tr|B3U006|B3U006_9FILI Ycf12 OS=Danaea leprieurii PE=4 SV=1 53 1e-05
tr|B3U004|B3U004_9FILI Ycf12 OS=Danaea elliptica PE=4 SV=1 53 1e-05
tr|B2BWV0|B2BWV0_9FILI Hypothetical chloroplast RF12 OS=Hymenoph... 53 1e-05
tr|B2BWR0|B2BWR0_9FILI Hypothetical chloroplast RF12 OS=Abrodict... 53 1e-05
tr|B2BWU4|B2BWU4_9FILI Hypothetical chloroplast RF12 OS=Hymenoph... 52 2e-05
tr|B2BWU2|B2BWU2_9FILI Hypothetical chloroplast RF12 OS=Hymenoph... 52 2e-05
tr|B2BWT6|B2BWT6_9FILI Hypothetical chloroplast RF12 OS=Hymenoph... 52 2e-05
tr|B2BWV6|B2BWV6_9FILI Hypothetical chloroplast RF12 OS=Polyphle... 52 3e-05
tr|B3U067|B3U067_9FILI Ycf12 OS=Marattia oreades PE=4 SV=1 51 5e-05
tr|B3U065|B3U065_9FILI Ycf12 OS=Marattia howeana PE=4 SV=1 51 5e-05
tr|B2BWS8|B2BWS8_9FILI Hypothetical chloroplast RF12 OS=Crepidom... 51 5e-05
tr|B2BWS4|B2BWS4_9FILI Hypothetical chloroplast RF12 OS=Crepidom... 51 5e-05

>tr|B3U0E1|B3U0E1_9FILI Ycf12 OS=Archangiopteris itoi PE=4 SV=1
Length = 33

Score = 52.8 bits (125), Expect = 1e-05
Identities = 25/33 (75%), Positives = 28/33 (84%)
Frame = +2

Query: 308 MNLEIITQLVVLTLVAASGPLVIALLAIRKGNL 406
MNLEI+ QL VL L+ SGPLVIALLA+RKGNL
Sbjct: 1 MNLEIVAQLTVLALIVVSGPLVIALLAVRKGNL 33


>tr|B3U0D9|B3U0D9_9FILI Ycf12 OS=Angiopteris smithii PE=4 SV=1
Length = 33

Score = 52.8 bits (125), Expect = 1e-05
Identities = 25/33 (75%), Positives = 28/33 (84%)
Frame = +2

Query: 308 MNLEIITQLVVLTLVAASGPLVIALLAIRKGNL 406
MNLEI+ QL VL L+ SGPLVIALLA+RKGNL
Sbjct: 1 MNLEIVAQLTVLALIVVSGPLVIALLAVRKGNL 33


>tr|B3U0D5|B3U0D5_9FILI Ycf12 OS=Angiopteris caudatiformis PE=4 SV=1
Length = 33

Score = 52.8 bits (125), Expect = 1e-05
Identities = 25/33 (75%), Positives = 28/33 (84%)
Frame = +2

Query: 308 MNLEIITQLVVLTLVAASGPLVIALLAIRKGNL 406
MNLEI+ QL VL L+ SGPLVIALLA+RKGNL
Sbjct: 1 MNLEIVAQLTVLALIVVSGPLVIALLAVRKGNL 33


>tr|B3U0D3|B3U0D3_9FILI Ycf12 OS=Angiopteris sp. China PE=4 SV=1
Length = 33

Score = 52.8 bits (125), Expect = 1e-05
Identities = 25/33 (75%), Positives = 28/33 (84%)
Frame = +2

Query: 308 MNLEIITQLVVLTLVAASGPLVIALLAIRKGNL 406
MNLEI+ QL VL L+ SGPLVIALLA+RKGNL
Sbjct: 1 MNLEIVAQLTVLALIVVSGPLVIALLAVRKGNL 33


>tr|B3U0D1|B3U0D1_9FILI Ycf12 OS=Angiopteris durvilleana PE=4 SV=1
Length = 33

Score = 52.8 bits (125), Expect = 1e-05
Identities = 25/33 (75%), Positives = 28/33 (84%)
Frame = +2

Query: 308 MNLEIITQLVVLTLVAASGPLVIALLAIRKGNL 406
MNLEI+ QL VL L+ SGPLVIALLA+RKGNL
Sbjct: 1 MNLEIVAQLTVLALIVVSGPLVIALLAVRKGNL 33


>tr|B3U0C7|B3U0C7_9FILI Ycf12 OS=Angiopteris boninensis PE=4 SV=1
Length = 33

Score = 52.8 bits (125), Expect = 1e-05
Identities = 25/33 (75%), Positives = 28/33 (84%)
Frame = +2

Query: 308 MNLEIITQLVVLTLVAASGPLVIALLAIRKGNL 406
MNLEI+ QL VL L+ SGPLVIALLA+RKGNL
Sbjct: 1 MNLEIVAQLTVLALIVVSGPLVIALLAVRKGNL 33


>tr|B3U0B9|B3U0B9_9FILI Ycf12 OS=Angiopteris angustifolia PE=4 SV=1
Length = 33

Score = 52.8 bits (125), Expect = 1e-05
Identities = 25/33 (75%), Positives = 28/33 (84%)
Frame = +2

Query: 308 MNLEIITQLVVLTLVAASGPLVIALLAIRKGNL 406
MNLEI+ QL VL L+ SGPLVIALLA+RKGNL
Sbjct: 1 MNLEIVAQLTVLALIVVSGPLVIALLAVRKGNL 33


>tr|B3U0B5|B3U0B5_ANGLY Ycf12 OS=Angiopteris lygodiifolia PE=4 SV=1
Length = 33

Score = 52.8 bits (125), Expect = 1e-05
Identities = 25/33 (75%), Positives = 28/33 (84%)
Frame = +2

Query: 308 MNLEIITQLVVLTLVAASGPLVIALLAIRKGNL 406
MNLEI+ QL VL L+ SGPLVIALLA+RKGNL
Sbjct: 1 MNLEIVAQLTVLALIVVSGPLVIALLAVRKGNL 33


>tr|B3U0B3|B3U0B3_9FILI Ycf12 OS=Angiopteris hypoleuca PE=4 SV=1
Length = 33

Score = 52.8 bits (125), Expect = 1e-05
Identities = 25/33 (75%), Positives = 28/33 (84%)
Frame = +2

Query: 308 MNLEIITQLVVLTLVAASGPLVIALLAIRKGNL 406
MNLEI+ QL VL L+ SGPLVIALLA+RKGNL
Sbjct: 1 MNLEIVAQLTVLALIVVSGPLVIALLAVRKGNL 33


>tr|B3U0B1|B3U0B1_9FILI Ycf12 OS=Angiopteris fokiensis PE=4 SV=1
Length = 33

Score = 52.8 bits (125), Expect = 1e-05
Identities = 25/33 (75%), Positives = 28/33 (84%)
Frame = +2

Query: 308 MNLEIITQLVVLTLVAASGPLVIALLAIRKGNL 406
MNLEI+ QL VL L+ SGPLVIALLA+RKGNL
Sbjct: 1 MNLEIVAQLTVLALIVVSGPLVIALLAVRKGNL 33