DK950816 |
Clone id |
TST38A01NGRL0009_L09 |
Library |
TST38 |
Length |
635 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_L09. 5' end sequence. |
Accession |
DK950816 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
- |
Sequence |
CTTCGCGTTTACGCCTTGCCCCATGCAAGAAAGGGTGATACAATTGTGATTGTAGAGACA CCCTTGGCCATAATGCAAGGACGCTTTAGACACCCTTCTAATGTCACTCCTTCTCTGATG GCAAAGTTGGCCTGCAAACTTTTTCACCCTACGTCATCTCTTGCTACTGCGTGCGGCATG CAGGCACTTCTTGATATAGCTGGAAGGTTAAGAGCTGTGCTTGCAATTATTGTTGCAGTG TTTGGACGGCTTGTGGGCGTACGAGGTCTCTTCTACCGATTGGCAGGTGAGCAGGCTCGG CTGATTGATGACGTTAGTGGAACCCTTCCACCGTATGATCAGTTTATTACGCTTGGACCG GTTCAAGCTCAGGCCCCCCCCCATTTGCTTCAACAGAAAACAGGTTTTAAGGTTGCGATC GTCGATGCCAACAATTTACGAAGAGTCCACATTCTTGCTGCATCGAATAAGGTGGACTGC ACTCTTGTGAATAGATTGCTCGAAACCAATCCCCAAGGAAATGACGATGAACAAACACCC CTTGTCATTCTACGCCCCGTCAGAGAACCAGGAGCTTTATAGATTGCTGAAGCTTACCAT GTTATTCACAATTTTTTTTGGCAAGCTGGAGAAAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P50872 |
Definition |
sp|P50872|TRPE_AZOBR Anthranilate synthase OS=Azospirillum brasilense |
Align length |
54 |
Score (bit) |
32.7 |
E-value |
1.6 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK950816|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0009_L09, 5' (635 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P50872|TRPE_AZOBR Anthranilate synthase OS=Azospirillum brasi... 33 1.6 sp|Q86WI1|PKHL1_HUMAN Fibrocystin-L OS=Homo sapiens GN=PKHD1L1 P... 33 1.6 sp|Q6FIY2|SEC12_CANGA Guanine nucleotide-exchange factor SEC12 O... 32 2.7 sp|P19712|POLG_CSFVA Genome polyprotein OS=Classical swine fever... 32 3.6 sp|Q01499|POLG_BVDVS Genome polyprotein OS=Bovine viral diarrhea... 31 4.7 sp|Q740D6|ENGA_MYCPA GTP-binding protein engA OS=Mycobacterium p... 31 4.7 sp|A0QH59|ENGA_MYCA1 GTP-binding protein engA OS=Mycobacterium a... 31 4.7 sp|Q3MIN7|RGL3_HUMAN Ral guanine nucleotide dissociation stimula... 31 6.1 sp|P19711|POLG_BVDVN Genome polyprotein OS=Bovine viral diarrhea... 31 6.1 sp|P21530|POLG_CSFVB Genome polyprotein OS=Classical swine fever... 30 8.0 sp|Q96662|POLG_BVDVC Genome polyprotein OS=Bovine viral diarrhea... 30 8.0 sp|Q16AX0|GCSP_ROSDO Glycine dehydrogenase [decarboxylating] OS=... 30 8.0 sp|P15312|AGI_HORVU Root-specific lectin OS=Hordeum vulgare PE=1... 30 8.0
>sp|P50872|TRPE_AZOBR Anthranilate synthase OS=Azospirillum brasilense GN=trpE(G) PE=4 SV=1 Length = 732
Score = 32.7 bits (73), Expect = 1.6 Identities = 19/54 (35%), Positives = 29/54 (53%) Frame = +1
Query: 160 LATACGMQALLDIAGRLRAVLAIIVAVFGRLVGVRGLFYRLAGEQARLIDDVSG 321 L+ G A D+AG + A LA+ + VFG +G++G+ R G L + V G Sbjct: 580 LSPGPGRPADFDVAGTIDAALALGLPVFGVCLGLQGMVERFGGALDVLPEPVHG 633
>sp|Q86WI1|PKHL1_HUMAN Fibrocystin-L OS=Homo sapiens GN=PKHD1L1 PE=2 SV=1 Length = 4243
Score = 32.7 bits (73), Expect = 1.6 Identities = 41/173 (23%), Positives = 67/173 (38%), Gaps = 15/173 (8%) Frame = +1
Query: 22 HARKGDTI--VIVETPLAIM-----QGRFRHPSNVTPSLMAKLACKLFHPTSSLATACGM 180 H KG + V+ E PL I QG F +T + F+P +S+ CG Sbjct: 1983 HKTKGSAMSTVVFEYPLNIQNINPSQGSFGGGQTMTVTGTG------FNPQNSIILVCGS 2036
Query: 181 QALLDIAGRLRAVLAIIVAVFGRLVGVRGLFYRLAGEQARLID-----DVSGTLPPYDQF 345 + +D RLR+ ++ G EQA + D+S ++ P+ Sbjct: 2037 ECAID---RLRSDYTTLLCEIPSNNGT-------GAEQACEVSVVNGKDLSQSMTPFTYA 2086
Query: 346 ITLGPVQAQAPPHLLQQKTGFKVAIVD---ANNLRRVHILAASNKVDCTLVNR 495 ++L P+ P G ++ +V + N+ VHI A K D N+ Sbjct: 2087 VSLTPLITAVSPKRGSTAGGTRLTVVGSGFSENMEDVHITIAEAKCDVEYSNK 2139
>sp|Q6FIY2|SEC12_CANGA Guanine nucleotide-exchange factor SEC12 OS=Candida glabrata GN=SEC12 PE=3 SV=1 Length = 459
Score = 32.0 bits (71), Expect = 2.7 Identities = 21/102 (20%), Positives = 47/102 (46%) Frame = -3
Query: 534 LFIVISLGIGFEQSIHKSAVHLIRCSKNVDSS*IVGIDDRNLKTCFLLKQMGGGLSLNRS 355 LF+ L +++ +HK+ ++ R K++DSS I+ ++D T + R Sbjct: 360 LFLAFVLNSMYKEDMHKNVLNYFRSVKSIDSSSILSMEDMEQVTLVGTISTSVRSTTQRF 419
Query: 354 KRNKLIIRWKGSTNVINQPSLLTCQSVEETSYAHKPSKHCNN 229 + +K + ST+V+ + ++ + ++ P +H N Sbjct: 420 ESSKSV----SSTSVVARTNVSEKERSQQDPVKKSPEQHQQN 457
>sp|P19712|POLG_CSFVA Genome polyprotein OS=Classical swine fever virus (strain Alfort) PE=1 SV=2 Length = 3898
Score = 31.6 bits (70), Expect = 3.6 Identities = 17/61 (27%), Positives = 26/61 (42%) Frame = -3
Query: 417 RNLKTCFLLKQMGGGLSLNRSKRNKLIIRWKGSTNVINQPSLLTCQSVEETSYAHKPSKH 238 + LK FLL L + RN++++RW G + P L+ S +KH Sbjct: 1428 KGLKKFFLLSSRVKELIIKHKVRNEVVVRWFGDEEIYGMPKLIGLVKAATLS----RNKH 1483
Query: 237 C 235 C Sbjct: 1484 C 1484
>sp|Q01499|POLG_BVDVS Genome polyprotein OS=Bovine viral diarrhea virus (strain SD-1) PE=3 SV=1 Length = 3898
Score = 31.2 bits (69), Expect = 4.7 Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 10/115 (8%) Frame = -3
Query: 549 NDKGCLFIVISLGIGFEQSIHKSAVHLIRCSKNVDSS*IVGI----------DDRNLKTC 400 + K L + L + F +H+ + I N+ S + + + + LK Sbjct: 1374 SSKWQLIYMAYLSVDFMYYMHRKVIEEISGGTNMISRIVAALIELNWSMEEEESKGLKKF 1433
Query: 399 FLLKQMGGGLSLNRSKRNKLIIRWKGSTNVINQPSLLTCQSVEETSYAHKPSKHC 235 +LL L + RN+ + W G V P ++T + + S +K +KHC Sbjct: 1434 YLLSGRLRNLIIKHKVRNETVAGWYGEEEVYGMPKIMT---IIKASTLNK-NKHC 1484
>sp|Q740D6|ENGA_MYCPA GTP-binding protein engA OS=Mycobacterium paratuberculosis GN=engA PE=3 SV=1 Length = 466
Score = 31.2 bits (69), Expect = 4.7 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 2/44 (4%) Frame = +1
Query: 232 VAVFGRL-VGVRGLFYRLAGEQARLIDDVSG-TLPPYDQFITLG 357 VA+ G+ VG L +LAG+Q ++ DV+G T+ P D I LG Sbjct: 205 VALVGKPNVGKSSLLNKLAGDQRSVVHDVAGTTVDPVDSLIELG 248
>sp|A0QH59|ENGA_MYCA1 GTP-binding protein engA OS=Mycobacterium avium (strain 104) GN=engA PE=3 SV=1 Length = 466
Score = 31.2 bits (69), Expect = 4.7 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 2/44 (4%) Frame = +1
Query: 232 VAVFGRL-VGVRGLFYRLAGEQARLIDDVSG-TLPPYDQFITLG 357 VA+ G+ VG L +LAG+Q ++ DV+G T+ P D I LG Sbjct: 205 VALVGKPNVGKSSLLNKLAGDQRSVVHDVAGTTVDPVDSLIELG 248
>sp|Q3MIN7|RGL3_HUMAN Ral guanine nucleotide dissociation stimulator-like 3 OS=Homo sapiens GN=RGL3 PE=1 SV=1 Length = 710
Score = 30.8 bits (68), Expect = 6.1 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 3/54 (5%) Frame = +3
Query: 420 RRCQQFTKSPHSCCIE*GGLHSCE*IARNQSPRK*R*TNTP---CHSTPRQRTR 572 RRCQ +T SPH + LH+ + QS R R P C S+PR R R Sbjct: 467 RRCQSYTLSPHPPIL--AALHAQNQLTEEQSYRLSRVIEPPAASCPSSPRIRRR 518
>sp|P19711|POLG_BVDVN Genome polyprotein OS=Bovine viral diarrhea virus (isolate NADL) PE=1 SV=2 Length = 3988
Score = 30.8 bits (68), Expect = 6.1 Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 10/115 (8%) Frame = -3
Query: 549 NDKGCLFIVISLGIGFEQSIHKSAVHLIRCSKNVDSS*IVGI----------DDRNLKTC 400 + K L + L + F +H+ + I N+ S + + + + LK Sbjct: 1374 SSKWQLIYMSYLTLDFMYYMHRKVIEEISGGTNIISRLVAALIELNWSMEEEESKGLKKF 1433
Query: 399 FLLKQMGGGLSLNRSKRNKLIIRWKGSTNVINQPSLLTCQSVEETSYAHKPSKHC 235 +LL L + RN+ + W G V P ++T S S+HC Sbjct: 1434 YLLSGRLRNLIIKHKVRNETVASWYGEEEVYGMPKIMTIIKASTLS----KSRHC 1484
>sp|P21530|POLG_CSFVB Genome polyprotein OS=Classical swine fever virus (strain Brescia) PE=3 SV=1 Length = 3898
Score = 30.4 bits (67), Expect = 8.0 Identities = 18/61 (29%), Positives = 25/61 (40%) Frame = -3
Query: 417 RNLKTCFLLKQMGGGLSLNRSKRNKLIIRWKGSTNVINQPSLLTCQSVEETSYAHKPSKH 238 R LK FLL L + RN++++ W G V P L+ S +KH Sbjct: 1428 RGLKKFFLLSSRVKELIIKHKVRNEVMVHWFGDEEVYGMPKLVGLVKAATLS----KNKH 1483
Query: 237 C 235 C Sbjct: 1484 C 1484
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SI88 |
Definition |
tr|A9SI88|A9SI88_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
158 |
Score (bit) |
213.0 |
E-value |
8.0e-54 |
Report |
|