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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950768
Clone id TST38A01NGRL0009_J03
Library
Length 700
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_J03. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
GAGAGAGAGAGAGAGAGAGAGAGATGCAGACCCGCCGCAAGAGAGAACCGCTCCATGAAG
ATGCAGCAGAAACTGAGAAGCCAAGAAGAGGGGCAAAGAAACGTGGCCGCCCAGTGTCGT
CCGAGGAAGAAAAACCAGAGCAGGCTGGCCCAAAGAAGGCACCCTCTCGCCCTCGACTGC
AAAAAACCCCATCAAAGAAGCGTACGGCAGGCAAGAAGGGCCCAAAGAGTGGCAAGAAAG
GTGCACCACAAGCAGAGCCCTCGGCGGCTCAAGCCTCAACGTCGGGTCATGAATCAGAGA
TGAAGGAGGCAGAAAATAAAATTAAAGTAAATCGAGCACCTGTGCTGACCATGTGGGTGG
CAGCCGTGGCAGAACGAGAGGGCTATTCTTTCGAGGAAGGGCTTAGCTTTGGTAAGGCCA
TCGCCGGGCTCATGGCGCAGTCGAAAGGGCGGAGCTTGGGTGTGTACGAGGAGCCCTCGG
AGGAGAAGAAAGAAGAGAGGAAGAGGAAGAGGAAGGAACTAGAAAGGTTTCCTGTGTTTG
GCATGAATGTTCCTGGCAAGACGACGCANGAGGGTTTTCGGCTGGCAGTGCAAAGTGGGA
AGCCTATATCGCCTTCATCTGTGGCGGAATATCTTTATAGAAGCTTTGGAGCCAACTACG
AAAGAGCCAAAGGTGCAATGGAAGATCTAGCAAACTCTTT
■■Homology search results ■■ -
sp_hit_id Q80923
Definition sp|Q80923|VE2_HPV48 Regulatory protein E2 OS=Human papillomavirus type 48
Align length 81
Score (bit) 33.5
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950768|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_J03, 5'
         (700 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q80923|VE2_HPV48 Regulatory protein E2 OS=Human papillomaviru...    33   1.1  
sp|P0C5Z8|ATL_STAAU Bifunctional autolysin OS=Staphylococcus aur...    31   5.6  
sp|Q99V41|ATL_STAAN Bifunctional autolysin OS=Staphylococcus aur...    31   5.6  
sp|Q931U5|ATL_STAAM Bifunctional autolysin OS=Staphylococcus aur...    31   5.6  
sp|A7X0T9|ATL_STAA1 Bifunctional autolysin OS=Staphylococcus aur...    31   5.6  
sp|Q5ZMJ9|SRRM1_CHICK Serine/arginine repetitive matrix protein ...    31   7.4  
sp|Q8NX96|ATL_STAAW Bifunctional autolysin OS=Staphylococcus aur...    31   7.4  
sp|Q6GAG0|ATL_STAAS Bifunctional autolysin OS=Staphylococcus aur...    31   7.4  
sp|Q6GI31|ATL_STAAR Bifunctional autolysin OS=Staphylococcus aur...    31   7.4  
sp|Q5HH31|ATL_STAAC Bifunctional autolysin OS=Staphylococcus aur...    31   7.4  
sp|Q2FZK7|ATL_STAA8 Bifunctional autolysin OS=Staphylococcus aur...    31   7.4  
sp|Q83EJ0|THIC_COXBU Thiamine biosynthesis protein thiC OS=Coxie...    30   9.6  
sp|Q7Z2Y5|NRK_HUMAN Nik-related protein kinase OS=Homo sapiens G...    30   9.6  

>sp|Q80923|VE2_HPV48 Regulatory protein E2 OS=Human papillomavirus
           type 48 GN=E2 PE=3 SV=1
          Length = 396

 Score = 33.5 bits (75), Expect = 1.1
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
 Frame = +2

Query: 29  DPPQERTAP*RCSRN*EAKKRGKETWP-PSVVRGRKT---RAGWPKEGTLSPSTAKNPIK 196
           +P +  T      R    +K G ++ P PS V  R T   R G+ + G L       P+ 
Sbjct: 259 EPRESGTTDTTPRRRGTKRKLGSDSAPTPSEVGSRSTTLARHGYSRLGRLQEEARDPPLV 318

Query: 197 EAYGRQEGPKEWQERCTTSRA 259
              G+Q   K W+ RCTT  A
Sbjct: 319 LFTGQQNNLKCWRNRCTTKYA 339


>sp|P0C5Z8|ATL_STAAU Bifunctional autolysin OS=Staphylococcus aureus
           GN=atl PE=1 SV=1
          Length = 1255

 Score = 31.2 bits (69), Expect = 5.6
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +2

Query: 143 GWPKEGTLSPSTAKNP--IKEAYGRQEGPKEWQERCTTSRALGGSSLNVGS 289
           GW KEG +  +TAK+P  + ++Y  + G K +     TS+ + GS    G+
Sbjct: 504 GWVKEGDVVYNTAKSPVNVNQSYSIKSGTKLYTVPWGTSKQVAGSVSGSGN 554


>sp|Q99V41|ATL_STAAN Bifunctional autolysin OS=Staphylococcus aureus
           (strain N315) GN=atl PE=1 SV=1
          Length = 1248

 Score = 31.2 bits (69), Expect = 5.6
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +2

Query: 143 GWPKEGTLSPSTAKNP--IKEAYGRQEGPKEWQERCTTSRALGGSSLNVGS 289
           GW KEG +  +TAK+P  + ++Y  + G K +     TS+ + GS    G+
Sbjct: 497 GWVKEGDVVYNTAKSPVNVNQSYSIKSGTKLYTVPWGTSKQVAGSVSGSGN 547


>sp|Q931U5|ATL_STAAM Bifunctional autolysin OS=Staphylococcus aureus
           (strain Mu50 / ATCC 700699) GN=atl PE=3 SV=2
          Length = 1248

 Score = 31.2 bits (69), Expect = 5.6
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +2

Query: 143 GWPKEGTLSPSTAKNP--IKEAYGRQEGPKEWQERCTTSRALGGSSLNVGS 289
           GW KEG +  +TAK+P  + ++Y  + G K +     TS+ + GS    G+
Sbjct: 497 GWVKEGDVVYNTAKSPVNVNQSYSIKSGTKLYTVPWGTSKQVAGSVSGSGN 547


>sp|A7X0T9|ATL_STAA1 Bifunctional autolysin OS=Staphylococcus aureus
           (strain Mu3 / ATCC 700698) GN=atl PE=3 SV=2
          Length = 1255

 Score = 31.2 bits (69), Expect = 5.6
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +2

Query: 143 GWPKEGTLSPSTAKNP--IKEAYGRQEGPKEWQERCTTSRALGGSSLNVGS 289
           GW KEG +  +TAK+P  + ++Y  + G K +     TS+ + GS    G+
Sbjct: 504 GWVKEGDVVYNTAKSPVNVNQSYSIKSGTKLYTVPWGTSKQVAGSVSGSGN 554


>sp|Q5ZMJ9|SRRM1_CHICK Serine/arginine repetitive matrix protein 1
           OS=Gallus gallus GN=SRRM1 PE=2 SV=1
          Length = 888

 Score = 30.8 bits (68), Expect = 7.4
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
 Frame = +2

Query: 95  KETWPPSVVRGRKTRAGWP-----KEGTLSPSTAKNPIKEAYGRQEGPKE 229
           K   PPS  R R   A W      K  T SPS A+N  +E  G+++  K+
Sbjct: 755 KHQGPPSPARSRSPSANWSPAKKAKSPTQSPSPARNSDQEGGGKKKKKKK 804


>sp|Q8NX96|ATL_STAAW Bifunctional autolysin OS=Staphylococcus aureus
           (strain MW2) GN=atl PE=3 SV=1
          Length = 1256

 Score = 30.8 bits (68), Expect = 7.4
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +2

Query: 143 GWPKEGTLSPSTAKNP--IKEAYGRQEGPKEWQERCTTSRALGGSSLNVGS 289
           GW KEG +  +TAK+P  + ++Y  + G K +     TS+ + GS    G+
Sbjct: 505 GWVKEGDVVYNTAKSPVNVNQSYSIKPGTKLYTVPWGTSKQVAGSVSGSGN 555


>sp|Q6GAG0|ATL_STAAS Bifunctional autolysin OS=Staphylococcus aureus
           (strain MSSA476) GN=atl PE=3 SV=1
          Length = 1250

 Score = 30.8 bits (68), Expect = 7.4
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +2

Query: 143 GWPKEGTLSPSTAKNP--IKEAYGRQEGPKEWQERCTTSRALGGSSLNVGS 289
           GW KEG +  +TAK+P  + ++Y  + G K +     TS+ + GS    G+
Sbjct: 499 GWVKEGDVVYNTAKSPVNVNQSYSIKPGTKLYTVPWGTSKQVAGSVSGSGN 549


>sp|Q6GI31|ATL_STAAR Bifunctional autolysin OS=Staphylococcus aureus
           (strain MRSA252) GN=atl PE=3 SV=1
          Length = 1257

 Score = 30.8 bits (68), Expect = 7.4
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +2

Query: 143 GWPKEGTLSPSTAKNP--IKEAYGRQEGPKEWQERCTTSRALGGSSLNVGS 289
           GW KEG +  +TAK+P  + ++Y  + G K +     TS+ + GS    G+
Sbjct: 506 GWVKEGDVVYNTAKSPVNVNQSYSIKPGTKLYTVPWGTSKQVAGSVSGSGN 556


>sp|Q5HH31|ATL_STAAC Bifunctional autolysin OS=Staphylococcus aureus
           (strain COL) GN=atl PE=3 SV=1
          Length = 1256

 Score = 30.8 bits (68), Expect = 7.4
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +2

Query: 143 GWPKEGTLSPSTAKNP--IKEAYGRQEGPKEWQERCTTSRALGGSSLNVGS 289
           GW KEG +  +TAK+P  + ++Y  + G K +     TS+ + GS    G+
Sbjct: 505 GWVKEGDVVYNTAKSPVNVNQSYSIKPGTKLYTVPWGTSKQVAGSVSGSGN 555
tr_hit_id B8LMP8
Definition tr|B8LMP8|B8LMP8_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 133
Score (bit) 136.0
E-value 1.0e-30
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950768|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_J03, 5'
         (700 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LMP8|B8LMP8_PICSI Putative uncharacterized protein OS=Picea...   136   1e-30
tr|A9RPG3|A9RPG3_PHYPA Predicted protein OS=Physcomitrella paten...   109   2e-22
tr|B0CYG9|B0CYG9_LACBS Predicted protein OS=Laccaria bicolor (st...    56   3e-06
tr|A8PSJ6|A8PSJ6_MALGO Putative uncharacterized protein OS=Malas...    52   5e-05
tr|Q4PB59|Q4PB59_USTMA Predicted protein OS=Ustilago maydis GN=U...    50   1e-04
tr|A8NXP6|A8NXP6_COPC7 Predicted protein OS=Coprinopsis cinerea ...    44   0.013
tr|A3AFV9|A3AFV9_ORYSJ Putative uncharacterized protein OS=Oryza...    37   1.2  
tr|Q7Z9J3|Q7Z9J3_9PEZI MAP kinase kinase kinase Czk3 OS=Cercospo...    35   3.5  
tr|A2XEB5|A2XEB5_ORYSI Putative uncharacterized protein OS=Oryza...    34   7.9  

>tr|B8LMP8|B8LMP8_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 216

 Score =  136 bits (342), Expect = 1e-30
 Identities = 72/133 (54%), Positives = 89/133 (66%), Gaps = 1/133 (0%)
 Frame = +3

Query: 303 KEAENKIKVNRAPVLTMWVAAVAEREGYSFEEGLSFGKAIAGLMAQSKGRSLGVY-XXXX 479
           KE   +I++NRAPVLT+WVA VAER+GY++EEGLSFGKAI+G++A SKGR LGVY     
Sbjct: 33  KEELERIEINRAPVLTLWVAVVAERQGYAYEEGLSFGKAISGILAHSKGRRLGVYEDKDQ 92

Query: 480 XXXXXXXXXXXXXXXXFPVFGMNVPGKTTXEGFRLAVQSGKPISPSSVAEYLYRSFGANY 659
                           F VFGM + G+TT EG RLA+Q+ KPISP SV  YL R+FG  Y
Sbjct: 93  QDRKRKTKQQQKEKEKFDVFGMRIAGQTTKEGTRLALQNNKPISPVSVESYLRRAFGPYY 152

Query: 660 ERAKGAMEDLANS 698
           E+ K AM  LA +
Sbjct: 153 EQGKEAMRALAKA 165


>tr|A9RPG3|A9RPG3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_160256 PE=4 SV=1
          Length = 593

 Score =  109 bits (272), Expect = 2e-22
 Identities = 58/126 (46%), Positives = 84/126 (66%)
 Frame = +3

Query: 312 ENKIKVNRAPVLTMWVAAVAEREGYSFEEGLSFGKAIAGLMAQSKGRSLGVYXXXXXXXX 491
           E +IK+NRAPVLTMWVAAVAER+G++F+E ++FGK+IAGL A +KG+ +GV         
Sbjct: 375 EGEIKINRAPVLTMWVAAVAERQGFTFDEAVTFGKSIAGLFAHAKGKRIGV------VED 428

Query: 492 XXXXXXXXXXXXFPVFGMNVPGKTTXEGFRLAVQSGKPISPSSVAEYLYRSFGANYERAK 671
                       F VFG +V GKTT +G R A++SGK I+P+ V  YL R+F  +Y+R +
Sbjct: 429 TPSKKSKKDMEKFEVFGCSVYGKTTAKG-RFALESGKAIAPNVVKAYLQRAFKDDYDRVR 487

Query: 672 GAMEDL 689
             ++++
Sbjct: 488 VNVDEI 493


>tr|B0CYG9|B0CYG9_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_311862 PE=4 SV=1
          Length = 388

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 40/124 (32%), Positives = 53/124 (42%)
 Frame = +3

Query: 327 VNRAPVLTMWVAAVAEREGYSFEEGLSFGKAIAGLMAQSKGRSLGVYXXXXXXXXXXXXX 506
           VNRAP++T W   VAER  +  EE LS       + A SKG SLG+Y             
Sbjct: 158 VNRAPIMTAWATLVAERMHFKREEALSIASVYTEINAISKGISLGIY--DKGKGKCLEVP 215

Query: 507 XXXXXXXFPVFGMNVPGKTTXEGFRLAVQSGKPISPSSVAEYLYRSFGANYERAKGAMED 686
                    + G   P   T  G   A+ +G P+ PS+   Y+ RSF        GA+  
Sbjct: 216 TEGSQPYVELMGRR-PLYHTQSGEWRALSNGSPVPPSTAFSYISRSFRQTTASIVGALRL 274

Query: 687 LANS 698
           L+ S
Sbjct: 275 LSES 278


>tr|A8PSJ6|A8PSJ6_MALGO Putative uncharacterized protein
           OS=Malassezia globosa (strain ATCC 96807 / CBS 7966)
           GN=MGL_0269 PE=4 SV=1
          Length = 407

 Score = 51.6 bits (122), Expect = 5e-05
 Identities = 33/127 (25%), Positives = 53/127 (41%)
 Frame = +3

Query: 318 KIKVNRAPVLTMWVAAVAEREGYSFEEGLSFGKAIAGLMAQSKGRSLGVYXXXXXXXXXX 497
           ++ VNRAPV+T W   V E  G++  E LS         A+++ R++G+           
Sbjct: 177 RVVVNRAPVMTAWAVVVLEAMGFATNEALSLAHCYVSQTAEARARNIGIAGPKRPASEQH 236

Query: 498 XXXXXXXXXXFPVFGMNVPGKTTXEGFRLAVQSGKPISPSSVAEYLYRSFGANYERAKGA 677
                     F    + +P      G    + +G+ + PS   +YL+RS         GA
Sbjct: 237 LMSENQPHIEF--LRVRIPVFRLRNGEYRGLHAGEVMPPSRAYDYLHRSMFQMLPHVMGA 294

Query: 678 MEDLANS 698
           +  LANS
Sbjct: 295 LTLLANS 301


>tr|Q4PB59|Q4PB59_USTMA Predicted protein OS=Ustilago maydis
           GN=UM02654.1 PE=4 SV=1
          Length = 486

 Score = 50.4 bits (119), Expect = 1e-04
 Identities = 31/124 (25%), Positives = 50/124 (40%)
 Frame = +3

Query: 327 VNRAPVLTMWVAAVAEREGYSFEEGLSFGKAIAGLMAQSKGRSLGVYXXXXXXXXXXXXX 506
           VNRAPV+T+W   + E+  +S  E LS         +  +G SLG+              
Sbjct: 232 VNRAPVMTVWATILLEKLNFSRPEALSLAHCYVNYTSTMRGISLGI--IPAAEKERAVHI 289

Query: 507 XXXXXXXFPVFGMNVPGKTTXEGFRLAVQSGKPISPSSVAEYLYRSFGANYERAKGAMED 686
                  F + G+ +P     +G    + +G+ + P     Y+ RS         GA+  
Sbjct: 290 VGPNQPHFELMGVKIPVMQMQDGSYRGISAGEVVGPEKAFNYMRRSMAQTLSSVVGALTL 349

Query: 687 LANS 698
           LA+S
Sbjct: 350 LADS 353


>tr|A8NXP6|A8NXP6_COPC7 Predicted protein OS=Coprinopsis cinerea
           (strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_00365 PE=4
           SV=1
          Length = 239

 Score = 43.5 bits (101), Expect = 0.013
 Identities = 20/49 (40%), Positives = 28/49 (57%)
 Frame = +3

Query: 321 IKVNRAPVLTMWVAAVAEREGYSFEEGLSFGKAIAGLMAQSKGRSLGVY 467
           + +NRAPV+T W   VAE   +  EE LS       + A S+G S+G+Y
Sbjct: 165 VVINRAPVMTAWAMVVAETMNFKREEALSIASVYTEMNAISRGVSIGLY 213


>tr|A3AFV9|A3AFV9_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_009681 PE=4 SV=1
          Length = 340

 Score = 37.0 bits (84), Expect = 1.2
 Identities = 27/62 (43%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
 Frame = -2

Query: 219 PSCLPYASLMGFFAVEGERVPSLGQPAL-VFLPRTT----LGGHVSLPLFLASQFLLHLH 55
           PS  P     GFF+  G   P   +PA+ + LP TT    LG H  LP+  AS  L HLH
Sbjct: 149 PSLNPGGGYPGFFSGAGGFHPQ--EPAMPLTLPTTTQEFMLGTHSGLPMVSASALLNHLH 206

Query: 54  GA 49
           GA
Sbjct: 207 GA 208


>tr|Q7Z9J3|Q7Z9J3_9PEZI MAP kinase kinase kinase Czk3 OS=Cercospora
            zeae-maydis GN=CZK3 PE=4 SV=1
          Length = 1372

 Score = 35.4 bits (80), Expect = 3.5
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = -3

Query: 461  TQAPPFRLRHEPGDGLTKAKPFLERIALSFCHG-----CHPHGQ 345
            T++P F LR +P +G  KAK       L FC+G     CH HG+
Sbjct: 888  TRSPLFALRSKPREGKAKAKNSTHPELLCFCYGIWSAFCHSHGR 931


>tr|A2XEB5|A2XEB5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_10671 PE=4 SV=1
          Length = 340

 Score = 34.3 bits (77), Expect = 7.9
 Identities = 26/62 (41%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = -2

Query: 219 PSCLPYASLMGFFAVEGERVPSLGQPAL-VFLPRTT----LGGHVSLPLFLASQFLLHLH 55
           PS  P     GFF+  G   P   +PA+ + LP TT    LG H   P+  AS  L HLH
Sbjct: 149 PSLNPGGGYPGFFSGAGGFHPQ--EPAMPLTLPTTTQEFMLGTHSGHPMVSASALLNHLH 206

Query: 54  GA 49
           GA
Sbjct: 207 GA 208