DK950667
Clone id TST38A01NGRL0009_E19
Library
Length 480
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_E19. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence
GGCCGCACAACTTTGTACAAGAAAGTTGGGTTTTTTTTTTTTTTTTTACTGCCCAGATGA
CTTCGACGGCACATGATTTCAATTTCACTTAAGGTCTCGTGATTGAGTCTCTGGATCTCT
TTGTCTAAGTCTTCGTGCAAAGCTTCGATGGAGATGCAGTGATGTGGAAGTAGAGTAAAA
TGCTTGGAATTTCAAGATTTTGTAGCTAATCGAAGAATAAAGCTATGCTTCAACCTATCT
TGAGATGATTTCTGAAATCCAATAGGGATTTTACCTTGCATGGCTAATTACATACAGCTG
TATTTAAGTTGGATGTTGAGATTTAGAAGAAATTGACAATCAAATGGCCAAACTGACTTA
TTTTTTTTCCTTGCCCCCCCGCCCTCAAGGTTTTACCGAGGAAAAAAAAAAACGGGGTGC
TTGTAAGAACCTTGTGACGTTCATGTCCCGACAGCAATGTCTTGAGTNAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q5L6Z3
Definition sp|Q5L6Z3|RUVA_CHLAB Holliday junction ATP-dependent DNA helicase ruvA OS=Chlamydophila abortus
Align length 90
Score (bit) 28.9
E-value 8.6
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950667|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_E19, 5'
(421 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q5L6Z3|RUVA_CHLAB Holliday junction ATP-dependent DNA helicas... 29 8.6
sp|P24038|NIRT_PSEST Denitrification system component nirT OS=Ps... 29 8.6

>sp|Q5L6Z3|RUVA_CHLAB Holliday junction ATP-dependent DNA helicase
ruvA OS=Chlamydophila abortus GN=ruvA PE=3 SV=2
Length = 207

Score = 28.9 bits (63), Expect = 8.6
Identities = 25/90 (27%), Positives = 38/90 (42%)
Frame = -2

Query: 324 RKKNKSVWPFDCQFLLNLNIQLKYSCM*LAMQGKIPIGFQKSSQDRLKHSFILRLATKS* 145
++K + P D Q L + K SCM +Q +G+ KSS +R+
Sbjct: 130 KQKLADLLPLDAQILASWE-PAKPSCMEEGIQALAALGYPKSSAERM------------- 175

Query: 144 NSKHFTLLPHHCISIEALHEDLDKEIQRLN 55
++ + LP H E L L K +Q LN
Sbjct: 176 IAEAMSELPDHASVAEILPIALKKNLQGLN 205


>sp|P24038|NIRT_PSEST Denitrification system component nirT
OS=Pseudomonas stutzeri GN=nirT PE=2 SV=1
Length = 201

Score = 28.9 bits (63), Expect = 8.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -2

Query: 114 HCISIEALHEDLDKEIQRLNHETLSEIEIMCRRSHLG 4
+C S+E++ D+ K+ R HE E + C H G
Sbjct: 150 NCHSLESMSSDMQKQRARKQHEMAREDNLTCIACHKG 186


tr_hit_id Q8DG21
Definition tr|Q8DG21|Q8DG21_VIBVU TRAP-type C4-dicarboxylate transport system, large permease component OS=Vibrio vulnificus
Align length 46
Score (bit) 32.7
E-value 9.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950667|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_E19, 5'
(421 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q8DG21|Q8DG21_VIBVU TRAP-type C4-dicarboxylate transport syst... 33 9.2
tr|Q7MMH3|Q7MMH3_VIBVY TRAP-type C4-dicarboxylate transport syst... 33 9.2

>tr|Q8DG21|Q8DG21_VIBVU TRAP-type C4-dicarboxylate transport system,
large permease component OS=Vibrio vulnificus
GN=VV1_0028 PE=4 SV=1
Length = 453

Score = 32.7 bits (73), Expect = 9.2
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -3

Query: 416 KTLLSGHERHKVLTSTPFFFFLGKTLRAGGQGKKISQFGHLIVNFF 279
+TL + E H L + PFF + GG K+I +F +V +F
Sbjct: 45 QTLFNAFEGHYTLLAIPFFILASSFMSTGGVAKRIIRFAIAMVGWF 90


>tr|Q7MMH3|Q7MMH3_VIBVY TRAP-type C4-dicarboxylate transport system,
large permease component OS=Vibrio vulnificus (strain
YJ016) GN=VV1098 PE=4 SV=1
Length = 453

Score = 32.7 bits (73), Expect = 9.2
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -3

Query: 416 KTLLSGHERHKVLTSTPFFFFLGKTLRAGGQGKKISQFGHLIVNFF 279
+TL + E H L + PFF + GG K+I +F +V +F
Sbjct: 45 QTLFNAFEGHYTLLAIPFFILASSFMSTGGVAKRIIRFAIAMVGWF 90