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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950547
Clone id TST38A01NGRL0008_P06
Library
Length 663
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0008_P06. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
AGCATTCTCTCTTCTGCAGGACGATTGTAGTTCTTGCTCCTGCTAAGTTCAGGTAGTCAA
GCAATGGCGACCATGTCTGCGTCTCTAGCAGTGAGCGCCCCGGGATGTGCCCCAGCAGAG
CTGAGCCTCTCACAGAAGAGCTTCTCGGGCCTCAAGGCCTCCACCATCGTCGCGCCCAAG
TGTGGCAATCCCCTCGCCGTTTCCAATGGCAGCCGTGTCAGCGCCATGCTGGTGTGGAAG
CCGTACGACAACAAGAAGTTCGAGACTCTGTCATATCTGCCGCAGCTGAGTAGCGAGCAG
ATAGCAAAGCAGGTGGACTACATGGTGCGACAGAACTTTACTCCCTGCATCGAGTTCGAC
AACATTGGGAGCGTGTACCGGGAGCACTTCCACGGGAGCGGGTACTACGATGGGAGGTAC
TGGGTGATGTGGAAGCTGCCCATGTTTGGCTGCACCGACTCCGCCGCCGTGCTGCGCGAG
ATCACGGAGTGCGCCAAGGAGTACCCCAAGGCATTCATCCGGGTGCTCGGCTTCGATGCC
AAGCGGCAAGTTCAGGTTGCTGGCTTCCTTGTCCAGAAGCCCGGCCAGTGAAGTAAATTT
TTTCTGCTGCCTCTGAATTTCCCCAGCCCATATATCTAATTTGTTGTGAGCTATCATGAA
AGC
■■Homology search results ■■ -
sp_hit_id Q96542
Definition sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa
Align length 179
Score (bit) 187.0
E-value 4.0e-47
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950547|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_P06, 5'
         (663 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...   187   4e-47
sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai...   186   7e-47
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch...   184   3e-46
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch...   183   6e-46
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch...   183   8e-46
sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai...   182   1e-45
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch...   182   1e-45
sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small cha...   182   1e-45
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai...   181   4e-45
sp|P27985|RBS2_BRANA Ribulose bisphosphate carboxylase small cha...   180   5e-45
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai...   180   7e-45
sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha...   179   9e-45
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha...   179   1e-44
sp|P08135|RBS_RAPSA Ribulose bisphosphate carboxylase small chai...   179   2e-44
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai...   179   2e-44
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha...   178   2e-44
sp|Q39744|RBS2_FLAPR Ribulose bisphosphate carboxylase small cha...   178   2e-44
sp|Q02980|RBS_MALSP Ribulose bisphosphate carboxylase small chai...   178   3e-44
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha...   178   3e-44
sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small cha...   176   1e-43
sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai...   176   1e-43
sp|P07089|RBS_FLATR Ribulose bisphosphate carboxylase small chai...   176   1e-43
sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha...   176   1e-43
sp|Q39743|RBS1_FLAPR Ribulose bisphosphate carboxylase small cha...   176   1e-43
sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai...   175   2e-43
sp|P19309|RBS3_LEMGI Ribulose bisphosphate carboxylase small cha...   174   3e-43
sp|O24634|RBS1_FRIAG Ribulose bisphosphate carboxylase small cha...   174   3e-43
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai...   174   4e-43
sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha...   174   4e-43
sp|O22572|RBS2_FRIAG Ribulose bisphosphate carboxylase small cha...   173   6e-43

>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
          Length = 182

 Score =  187 bits (475), Expect = 4e-47
 Identities = 97/179 (54%), Positives = 120/179 (67%), Gaps = 9/179 (5%)
 Frame = +1

Query: 73  MSASLAVSAPGCAPAELSLSQKS----FSGLKASTI--VAPKCGNPLA--VSNGSRVSAM 228
           M+ S+  SA   A +  S +Q S    F+ LK+++   V  K  N +    SNG RV  M
Sbjct: 1   MACSMISSATVAAVSRASPAQSSMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCM 60

Query: 229 LVWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGY 405
            VW P   KKFETLSYLP LSSEQ+AK+VDY++R+N  PC+EF+   G VYREH    GY
Sbjct: 61  QVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGY 120

Query: 406 YDGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 582
           YDGRYW MWKLPMFGC DS+ VL+E+ EC K YP AFIR++GFD KRQVQ+  F+  KP
Sbjct: 121 YDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKP 179


>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
          Length = 181

 Score =  186 bits (473), Expect = 7e-47
 Identities = 94/178 (52%), Positives = 119/178 (66%), Gaps = 5/178 (2%)
 Frame = +1

Query: 64  MATMSASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLAV--SNGSRVSAML 231
           MA++S+S   +       + SL+   F+GLK++    V  K  N  +   SNG RV  M 
Sbjct: 1   MASISSSAIATVNRTTSTQASLAAP-FTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMK 59

Query: 232 VWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYY 408
           VW P   KK+ETLSYLP LS E ++K++DY++R  + PC+EF+   G VYREH H  GYY
Sbjct: 60  VWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYY 119

Query: 409 DGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 582
           DGRYW MWKLPMFGCTDSA V++E+ EC KEYP AFIRV+GFD  RQVQ   F+V KP
Sbjct: 120 DGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKP 177


>sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small chain
           1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A
           PE=1 SV=2
          Length = 180

 Score =  184 bits (468), Expect = 3e-46
 Identities = 91/175 (52%), Positives = 115/175 (65%), Gaps = 5/175 (2%)
 Frame = +1

Query: 73  MSASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLA--VSNGSRVSAMLVWK 240
           M++S+  SA   A    +     F+GLK+S       K  N +    SNG RV+ M VW 
Sbjct: 1   MASSMLSSATMVASPAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWP 60

Query: 241 PYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGR 417
           P   KKFETLSYLP L+  ++AK+VDY++R  + PC+EF+   G VYREH +  GYYDGR
Sbjct: 61  PIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGR 120

Query: 418 YWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 582
           YW MWKLP+FGCTDSA VL+E+ EC KEYP AFIR++GFD  RQVQ   F+  KP
Sbjct: 121 YWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKP 175


>sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small chain
           1B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1B
           PE=1 SV=1
          Length = 181

 Score =  183 bits (465), Expect = 6e-46
 Identities = 93/174 (53%), Positives = 119/174 (68%), Gaps = 5/174 (2%)
 Frame = +1

Query: 76  SASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLA--VSNGSRVSAMLVWKP 243
           S+ L+ +A   +PA+ ++    F+GLK+S    V  K  N +    SNG RVS M VW P
Sbjct: 3   SSMLSSAAVVTSPAQATMVAP-FTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWPP 61

Query: 244 YDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGRY 420
              KKFETLSYLP L+  ++AK+VDY++R  + PC+EF+   G VYREH +  GYYDGRY
Sbjct: 62  IGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRY 121

Query: 421 WVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 582
           W MWKLP+FGCTDSA VL+E+ EC KEYP AFIR++GFD  RQVQ   F+  KP
Sbjct: 122 WTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175


>sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small chain
           2B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-2B
           PE=2 SV=2
          Length = 181

 Score =  183 bits (464), Expect = 8e-46
 Identities = 93/174 (53%), Positives = 118/174 (67%), Gaps = 5/174 (2%)
 Frame = +1

Query: 76  SASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLA--VSNGSRVSAMLVWKP 243
           S+  + +A   +PA+ ++    F+GLK+S    V  K  N +    SNG RVS M VW P
Sbjct: 3   SSMFSSTAVVTSPAQATMVAP-FTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWPP 61

Query: 244 YDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGRY 420
              KKFETLSYLP LS  ++AK+VDY++R  + PC+EF+   G VYREH +  GYYDGRY
Sbjct: 62  IGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRY 121

Query: 421 WVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 582
           W MWKLP+FGCTDSA VL+E+ EC KEYP AFIR++GFD  RQVQ   F+  KP
Sbjct: 122 WTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175


>sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1
          Length = 180

 Score =  182 bits (462), Expect = 1e-45
 Identities = 96/178 (53%), Positives = 115/178 (64%), Gaps = 5/178 (2%)
 Frame = +1

Query: 64  MATMSASLAVSAPGCAPAELSLSQKSF----SGLKASTIVAPKCGNPLAVSNGSRVSAML 231
           MA++ AS AV  P  A A  +          +GLKA              +NGSRVS M 
Sbjct: 1   MASVVASAAVVTPFAASAASTTKSSQIVSVQAGLKAGVFGGKSEWQTKTQTNGSRVSCMQ 60

Query: 232 VWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHGSGYYD 411
           VW+PY+N KFETLSYLP LS + +AKQ+DY+++  + PCIEFD  G+V RE     GYYD
Sbjct: 61  VWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQGTVTREGSTMPGYYD 120

Query: 412 GRYWVMWKLPMFGCTDSAAVLREITECAKEY-PKAFIRVLGFDAKRQVQVAGFLVQKP 582
           GRYW MWKLPMFGCTDSA+VLREI EC K Y  K +IR LGFD  RQVQ A F+V +P
Sbjct: 121 GRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCASFIVHQP 178


>sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small chain
           3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B
           PE=1 SV=2
          Length = 181

 Score =  182 bits (462), Expect = 1e-45
 Identities = 93/174 (53%), Positives = 118/174 (67%), Gaps = 5/174 (2%)
 Frame = +1

Query: 76  SASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLA--VSNGSRVSAMLVWKP 243
           S+ L+ +A   +PA+ ++    F+GLK+S    V  K    +    SNG RVS M VW P
Sbjct: 3   SSMLSSAAVVTSPAQATMVAP-FTGLKSSAAFPVTRKTNKDITSIASNGGRVSCMKVWPP 61

Query: 244 YDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGRY 420
              KKFETLSYLP LS  ++AK+VDY++R  + PC+EF+   G VYREH +  GYYDGRY
Sbjct: 62  IGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRY 121

Query: 421 WVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 582
           W MWKLP+FGCTDSA VL+E+ EC KEYP AFIR++GFD  RQVQ   F+  KP
Sbjct: 122 WTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175


>sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Brassica napus GN=RBCS PE=2 SV=2
          Length = 181

 Score =  182 bits (462), Expect = 1e-45
 Identities = 92/174 (52%), Positives = 118/174 (67%), Gaps = 5/174 (2%)
 Frame = +1

Query: 76  SASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLA--VSNGSRVSAMLVWKP 243
           S+ L+ +A   +PA+ ++    F+GLK+S+   V  K  N +   VSNG RVS M VW P
Sbjct: 3   SSMLSSAAVVTSPAQATMVAP-FTGLKSSSAFPVTRKANNDITSIVSNGGRVSCMKVWPP 61

Query: 244 YDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGRY 420
              KKFETLSYLP L+  ++ K+VDY++R  + PC+EF+   G VYREH    GYYDGRY
Sbjct: 62  VGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRY 121

Query: 421 WVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 582
           W MWKLP+FGCTDSA VL+E+ EC  EYP AFIR++GFD  RQVQ   F+  KP
Sbjct: 122 WTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKP 175


>sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1
          Length = 189

 Score =  181 bits (458), Expect = 4e-45
 Identities = 91/182 (50%), Positives = 121/182 (66%), Gaps = 8/182 (4%)
 Frame = +1

Query: 61  AMATMSASLAVSAPGCAPAELSLSQKSFSGLKA-----STIVAPKCG---NPLAVSNGSR 216
           A+++ +A  AV+AP        +S  +F+GLK+     S+      G        SNGSR
Sbjct: 7   ALSSTAAVAAVAAPSKTGNSNVVS--AFTGLKSMAQFPSSKTMSNAGAEWEQKTTSNGSR 64

Query: 217 VSAMLVWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG 396
           V  M VW PY NKKFETLSYLP+L+ EQ+ K+V+Y+++  + PC+EF+  G + R + + 
Sbjct: 65  VRCMQVWPPYANKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFEEDGEIKRVYGNS 124

Query: 397 SGYYDGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQ 576
            GYYDGRYWVMWKLPMFGCT+++ VL E+ ECAK YP AFIRV+GFD  RQVQ   F+V 
Sbjct: 125 PGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFIVH 184

Query: 577 KP 582
           KP
Sbjct: 185 KP 186


>sp|P27985|RBS2_BRANA Ribulose bisphosphate carboxylase small chain
           F1, chloroplastic OS=Brassica napus GN=RBCS F1 PE=3 SV=1
          Length = 181

 Score =  180 bits (457), Expect = 5e-45
 Identities = 91/174 (52%), Positives = 116/174 (66%), Gaps = 5/174 (2%)
 Frame = +1

Query: 76  SASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLA--VSNGSRVSAMLVWKP 243
           S+ L+ +A   +PA+ ++    F+GLK+S    V  K  N +    SNG RVS M VW P
Sbjct: 3   SSMLSSAAVVTSPAQATMVAP-FTGLKSSAAFPVTRKANNDITSIASNGGRVSCMKVWPP 61

Query: 244 YDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGRY 420
              KKFETLSYLP L+  ++ K+VDY++R  + PC+EF+   G VYREH    GYYDGRY
Sbjct: 62  VGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRY 121

Query: 421 WVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 582
           W MWKLP+FGCTDSA VL+E+ EC  EYP AFIR++GFD  RQVQ   F+  KP
Sbjct: 122 WTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKP 175
tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 175
Score (bit) 304.0
E-value 4.0e-81
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950547|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_P06, 5'
         (663 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...   304   4e-81
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c...   212   2e-53
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c...   210   6e-53
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...   208   2e-52
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...   207   5e-52
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...   207   5e-52
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...   206   1e-51
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c...   195   2e-48
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c...   194   4e-48
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c...   194   5e-48
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c...   193   7e-48
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c...   193   7e-48
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c...   190   8e-47
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c...   190   8e-47
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c...   190   8e-47
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c...   189   1e-46
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c...   188   2e-46
tr|A9S8M9|A9S8M9_PHYPA Ribulose bisphosphate carboxylase small c...   187   5e-46
tr|A9RG04|A9RG04_PHYPA Ribulose bisphosphate carboxylase small c...   187   5e-46
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c...   187   7e-46
tr|A9S8M6|A9S8M6_PHYPA Ribulose bisphosphate carboxylase small c...   186   9e-46
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c...   186   1e-45
tr|A9NZM2|A9NZM2_PICSI Ribulose bisphosphate carboxylase small c...   185   3e-45
tr|Q0WVH4|Q0WVH4_ARATH Ribulose bisphosphate carboxylase small c...   184   3e-45
tr|A9U377|A9U377_PHYPA Ribulose bisphosphate carboxylase small c...   184   6e-45
tr|A9NNZ8|A9NNZ8_PICSI Ribulose bisphosphate carboxylase small c...   183   1e-44
tr|A9NML5|A9NML5_PICSI Ribulose bisphosphate carboxylase small c...   182   2e-44
tr|A9NMJ1|A9NMJ1_PICSI Ribulose bisphosphate carboxylase small c...   182   2e-44
tr|A9NM29|A9NM29_PICSI Ribulose bisphosphate carboxylase small c...   182   2e-44
tr|A0FIP7|A0FIP7_CAMSI Ribulose bisphosphate carboxylase small c...   181   4e-44

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score =  304 bits (778), Expect = 4e-81
 Identities = 145/175 (82%), Positives = 160/175 (91%)
 Frame = +1

Query: 64  MATMSASLAVSAPGCAPAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVSAMLVWKP 243
           MATM A++AVSAP CA A  SLS KSFSGLKA+T+ APKC NPLA+SNGSR+SAMLVWKP
Sbjct: 1   MATMLAAMAVSAPSCAAAAESLS-KSFSGLKANTLFAPKCANPLAISNGSRISAMLVWKP 59

Query: 244 YDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHGSGYYDGRYW 423
           YDNKKFETLSYLP L+++QIAKQV+YMVR+ +TPCIEFD IGSVYREHFHGSGYYDGRYW
Sbjct: 60  YDNKKFETLSYLPPLTNDQIAKQVEYMVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYW 119

Query: 424 VMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKPGQ 588
           +MWKLPMFGCTDS +VLREI ECAKEYP AFIRVLGFDAKRQVQVAGFLV+KP Q
Sbjct: 120 IMWKLPMFGCTDSGSVLREIAECAKEYPTAFIRVLGFDAKRQVQVAGFLVKKPSQ 174


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87740 PE=3 SV=1
          Length = 179

 Score =  212 bits (539), Expect = 2e-53
 Identities = 103/177 (58%), Positives = 125/177 (70%), Gaps = 3/177 (1%)
 Frame = +1

Query: 61  AMATMSASLAVSAPGCAPAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVSAMLVWK 240
           A A +S S+  +A   A    S S K FSGLK++T+ A K     +V NGSRV  M VW 
Sbjct: 2   ASAVVSVSIVAAASPAAVCRESSSVKQFSGLKSTTLFASKARRLSSVHNGSRVQCMQVWN 61

Query: 241 PYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYD 411
           P    KFET SYLP L+ +QIAKQVD+M++QN  PCIEFD +GSV R +F G   SGYYD
Sbjct: 62  PIGQPKFETFSYLPPLTDDQIAKQVDFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYD 121

Query: 412 GRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 582
           GRYW MWKLPMFGCTDSA VLREI EC + +P  ++RVLGFD+K+QVQ+ GFLV +P
Sbjct: 122 GRYWTMWKLPMFGCTDSAQVLREIQECKQSFPSCWVRVLGFDSKKQVQICGFLVARP 178


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87752 PE=3 SV=1
          Length = 179

 Score =  210 bits (535), Expect = 6e-53
 Identities = 102/177 (57%), Positives = 125/177 (70%), Gaps = 3/177 (1%)
 Frame = +1

Query: 61  AMATMSASLAVSAPGCAPAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVSAMLVWK 240
           A A +S S+  +A   +    S S K FSGLK++T+ A K     +V NGSRV  M VW 
Sbjct: 2   ASAVVSVSIVAAASPASVCRESSSVKQFSGLKSTTLSASKARRLSSVHNGSRVQCMQVWN 61

Query: 241 PYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYD 411
           P    KFET SYLP L+ +QIAKQVD+M++QN  PCIEFD +GSV R +F G   SGYYD
Sbjct: 62  PIGQPKFETFSYLPPLTDDQIAKQVDFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYD 121

Query: 412 GRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 582
           GRYW MWKLPMFGCTDSA VLREI EC + +P  ++RVLGFD+K+QVQ+ GFLV +P
Sbjct: 122 GRYWTMWKLPMFGCTDSAQVLREIQECKQSFPSCWVRVLGFDSKKQVQICGFLVARP 178


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_221004 PE=3 SV=1
          Length = 184

 Score =  208 bits (530), Expect = 2e-52
 Identities = 100/170 (58%), Positives = 122/170 (71%), Gaps = 3/170 (1%)
 Frame = +1

Query: 82  SLAVSAPGCAPAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVSAMLVWKPYDNKKF 261
           SL  +A   A +  S + K+FSGLK +T+ + K     AV NGSRV  M VW P    KF
Sbjct: 14  SLGAAASSVAASNESATVKAFSGLKPATLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKF 73

Query: 262 ETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYDGRYWVMW 432
           ET SYLP L+ +QIAKQVDYM++QN  PCIEFD +GSV R +F G   SGYYDGRYW MW
Sbjct: 74  ETFSYLPPLTDDQIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMW 133

Query: 433 KLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 582
           KLPMFGCTDS+ VLREI EC  ++P  ++RVLGFD+K+QVQ+ GFLV +P
Sbjct: 134 KLPMFGCTDSSQVLREIQECKSQFPSCWVRVLGFDSKKQVQICGFLVSRP 183


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
          Length = 214

 Score =  207 bits (527), Expect = 5e-52
 Identities = 104/179 (58%), Positives = 131/179 (73%), Gaps = 6/179 (3%)
 Frame = +1

Query: 64  MATMSASLAVS-APGC--APAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVSAMLV 234
           ++T+ A +A+  A  C  AP+E S S K+FSGLK++T+ + K     +V NGSRV  M V
Sbjct: 36  VSTVVAPVALGGASSCVGAPSESS-SVKAFSGLKSATLFSGKTQKLSSVQNGSRVQCMQV 94

Query: 235 WKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGY 405
           W P    KFET SYLP L+ +QIAKQVDYM++QN  PCIEFD +GSV R +F G   SGY
Sbjct: 95  WNPIGQPKFETFSYLPPLTDDQIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGY 154

Query: 406 YDGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 582
           YDGRYW MWKLPMFGCTDS+ VLREI EC  ++P  ++RVLGFD+K+QVQ+ GFLV +P
Sbjct: 155 YDGRYWTMWKLPMFGCTDSSQVLREIQECKSQFPSCWVRVLGFDSKKQVQICGFLVSRP 213


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score =  207 bits (527), Expect = 5e-52
 Identities = 99/170 (58%), Positives = 122/170 (71%), Gaps = 3/170 (1%)
 Frame = +1

Query: 82  SLAVSAPGCAPAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVSAMLVWKPYDNKKF 261
           S+ V++   A +  S S K+FSGLK++T+   K     +V NGSRV  M VW P    KF
Sbjct: 14  SVTVASSSVAASRESSSVKAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKF 73

Query: 262 ETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYDGRYWVMW 432
           ET SYLP LS +QIA+QVDYM++QN  PCIEFD +G+V R +F G   SGYYDGRYW MW
Sbjct: 74  ETFSYLPPLSDDQIARQVDYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMW 133

Query: 433 KLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 582
           KLPMFGCTDS+ VLREI EC   YP  ++RVLGFD+K+QVQ+ GFLV +P
Sbjct: 134 KLPMFGCTDSSQVLREIQECKTSYPSCWVRVLGFDSKKQVQICGFLVARP 183


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_225236 PE=3 SV=1
          Length = 183

 Score =  206 bits (524), Expect = 1e-51
 Identities = 98/170 (57%), Positives = 124/170 (72%), Gaps = 3/170 (1%)
 Frame = +1

Query: 82  SLAVSAPGCAPAELSLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVSAMLVWKPYDNKKF 261
           SLA ++P     + S S K+FSGLK++T+ + +     +V NGSRV  M VW P    KF
Sbjct: 14  SLAAASPAAVSRD-STSVKAFSGLKSATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKF 72

Query: 262 ETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYDGRYWVMW 432
           ET SYLP L+ ++IAKQVDYM++QN  PCIEFD +GSV R +F G   SGYYDGRYW MW
Sbjct: 73  ETFSYLPPLTDDEIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMW 132

Query: 433 KLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 582
           KLPMFGCTDS+ VLREI EC  ++P  ++RVLGFD+K+QVQ+ GFLV +P
Sbjct: 133 KLPMFGCTDSSQVLREIQECKTQFPSCWVRVLGFDSKKQVQICGFLVSRP 182


>tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_115069 PE=3 SV=1
          Length = 181

 Score =  195 bits (495), Expect = 2e-48
 Identities = 99/180 (55%), Positives = 120/180 (66%), Gaps = 7/180 (3%)
 Frame = +1

Query: 64  MATMSASLAVSAP----GCAPAEL---SLSQKSFSGLKASTIVAPKCGNPLAVSNGSRVS 222
           MA+  A+ AV AP      +PA     S + K+FSGLK++T+ + K  N  +V NGSRV 
Sbjct: 1   MASTVAASAVVAPTAFAAASPAASTSGSTTVKAFSGLKSATVFSGKAQNSSSVQNGSRVQ 60

Query: 223 AMLVWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHGSG 402
            M VW P    KFET SYLP LS + IAKQV+YM++Q   PC+EFDN   V R +    G
Sbjct: 61  CMQVWNPIGMTKFETFSYLPPLSDDAIAKQVEYMIQQKLIPCLEFDNANGVSRTNNSSPG 120

Query: 403 YYDGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 582
           YYDGRYW MWKLPMFGC DSA VLREI EC K +P  F+RVLGFD  +QVQ+ GFLV +P
Sbjct: 121 YYDGRYWTMWKLPMFGCQDSAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLVARP 180


>tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_152025 PE=3 SV=1
          Length = 183

 Score =  194 bits (493), Expect = 4e-48
 Identities = 98/181 (54%), Positives = 121/181 (66%), Gaps = 7/181 (3%)
 Frame = +1

Query: 61  AMATMSASLAVSAP---GCAPAELSLSQ----KSFSGLKASTIVAPKCGNPLAVSNGSRV 219
           AMA++ A+  V AP     A + +S S+    K+FSGLK++T+ + K     +V NGSRV
Sbjct: 2   AMASIVAATTVVAPTAFAAASSAVSTSESSSVKAFSGLKSNTLFSSKAQTLSSVQNGSRV 61

Query: 220 SAMLVWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHGS 399
             M VW P    KFET SYLP LS + IAKQV+YM++Q   PC+EFDN   V R +    
Sbjct: 62  QCMQVWNPIGMTKFETFSYLPPLSDDAIAKQVEYMIQQKLIPCLEFDNANGVSRTNNSSP 121

Query: 400 GYYDGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQK 579
           GYYDGRYW MWKLPMFGC DSA VLREI EC K +P  F+RVLGFD  +QVQ+ GFLV +
Sbjct: 122 GYYDGRYWTMWKLPMFGCNDSAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLVAR 181

Query: 580 P 582
           P
Sbjct: 182 P 182


>tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small
           chain OS=Lactuca sativa PE=2 SV=1
          Length = 181

 Score =  194 bits (492), Expect = 5e-48
 Identities = 96/178 (53%), Positives = 122/178 (68%), Gaps = 5/178 (2%)
 Frame = +1

Query: 64  MATMSASLAVSAPGCAPAELSLSQKSFSGLKASTI--VAPKCGNPLAV--SNGSRVSAML 231
           MA++S+S   +     PA+ SL+   F+GLK++    V  K  N  +   SNG RV  M 
Sbjct: 1   MASISSSAVATVNRSTPAQASLAAP-FTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMK 59

Query: 232 VWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYY 408
           VW P   KK+ETLSYLP LS E ++K++DY++R  + PC+EF+   G VYREH H  GYY
Sbjct: 60  VWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWVPCLEFELEHGFVYREHHHSPGYY 119

Query: 409 DGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 582
           DGRYW MWKLPMFGCTDSA V++E+ EC KEYP AFIRV+GFD+ RQVQ   F+V KP
Sbjct: 120 DGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDSVRQVQCISFIVSKP 177