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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950523
Clone id TST38A01NGRL0008_O04
Library
Length 681
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0008_O04. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GGAATGCATCAGCAAAGGTCAATCTTGTCCCATCATGCTCCGACATCGCCATGTCCGTTA
CAGAGTCCTCAACTGGCAGCAAGTCCTATTGCTAGGACGAGTTTTCTTCCTACAGAAAGG
AAGAATATCGATAAACCCACCCATGTTGCATCCTCTCGACCCTCTGAAAGCAGTGATGCT
GGGACTAAGAGGGGACTCAAGGAACAACTTGAAGCGCCGTCAGGGCGTGGAAAAGGGTTG
ATAGGTCAGCCAGTTCTGATGGAGAGAAGACAGATTTCAGTGAAGGAATGGAGCCTCAAG
TGGTCAAATTAGAAAGGAATGGTTCGGTAAGGACATACAGCCTTACAGGAAATGGAACTG
ACAAGAATTCTGTTGCTCATCCCAAGGAAAGCAATGGCACCAAGTCCTGCTTTTCAGCCC
CACATGAAGACCTGAAAGTTCACCTTATAGAGCTAGTCAAGAAGCAGACTTGGCCTGTAT
ATCTTGCAGAGCGATTGGACAAGGAACAATTTAAACGGATTGCAAGAGCTGCGGTGCATT
CATTGCTTGCTGTATGTGACTCAAGCAATAACTCTCTGAGTTCATCCTGTCGTCATCTCG
AGGACCATGGTAAGGACCCTATAGTCAATTGCTGTACTAAGTGTCTTCAACAACATGTGG
AAAATGCAGTGAGGACTGCTA
■■Homology search results ■■ -
sp_hit_id Q5BK20
Definition sp|Q5BK20|HN1L_RAT Hematological and neurological expressed 1-like protein OS=Rattus norvegicus
Align length 74
Score (bit) 33.5
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950523|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_O04, 5'
         (681 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5BK20|HN1L_RAT Hematological and neurological expressed 1-li...    33   1.1  
sp|Q9H910|HN1L_HUMAN Hematological and neurological expressed 1-...    32   3.1  
sp|O14529|CUX2_HUMAN Homeobox protein cut-like 2 OS=Homo sapiens...    32   3.1  
sp|Q6PGH2|HN1L_MOUSE Hematological and neurological expressed 1-...    31   5.4  
sp|P53617|NRD1_YEAST Protein NRD1 OS=Saccharomyces cerevisiae GN...    31   7.0  
sp|Q96NZ1|FOXN4_HUMAN Forkhead box protein N4 OS=Homo sapiens GN...    31   7.0  
sp|P70298|CUX2_MOUSE Homeobox protein cut-like 2 OS=Mus musculus...    31   7.0  
sp|Q61X54|MED1_CAEBR Mediator of RNA polymerase II transcription...    30   9.1  
sp|P54583|GUN1_ACIC1 Endoglucanase E1 OS=Acidothermus cellulolyt...    30   9.1  

>sp|Q5BK20|HN1L_RAT Hematological and neurological expressed 1-like
           protein OS=Rattus norvegicus GN=Hn1l PE=2 SV=1
          Length = 190

 Score = 33.5 bits (75), Expect = 1.1
 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = +1

Query: 37  APTSPCPLQSPQLAASPIARTSFLPTER-KNIDKPTHVASSRPSESSDAGTKRGLKEQLE 213
           +P    P   P   AS I    F PTE  KNI K T+    + S   D  T    +++L 
Sbjct: 30  SPEEGVPSSKPHRMASNI----FGPTEEPKNIPKRTNPPGGKGSGIFDESTPVQTRQRLN 85

Query: 214 APSGRGKGLIGQPV 255
            P G+   + G PV
Sbjct: 86  PPGGKTSDIFGSPV 99


>sp|Q9H910|HN1L_HUMAN Hematological and neurological expressed
           1-like protein OS=Homo sapiens GN=HN1L PE=1 SV=1
          Length = 190

 Score = 32.0 bits (71), Expect = 3.1
 Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
 Frame = +1

Query: 37  APTSPCPLQSPQLAASPIARTSFLPTER-KNIDKPTHVASSRPSESSDAGTKRGLKEQLE 213
           +P    P   P   AS I    F PTE  +NI K T+    + S   D  T    ++ L 
Sbjct: 30  SPEEATPSSRPNRMASNI----FGPTEEPQNIPKRTNPPGGKGSGIFDESTPVQTRQHLN 85

Query: 214 APSGRGKGLIGQPVLMERR 270
            P G+   + G PV    R
Sbjct: 86  PPGGKTSDIFGSPVTATSR 104


>sp|O14529|CUX2_HUMAN Homeobox protein cut-like 2 OS=Homo sapiens
           GN=CUX2 PE=1 SV=3
          Length = 1424

 Score = 32.0 bits (71), Expect = 3.1
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
 Frame = +1

Query: 43  TSPCPLQSPQLAASP-----IARTSFLPTERKNIDKPTHVASSRPSESSDAGTKRGLKEQ 207
           +S C L  PQ  A P     IA+ +F PT++  ++KP+ +AS     S D   K  L  +
Sbjct: 317 SSTCSL--PQGMAKPEDSLLIAKEAFFPTQKFLLEKPSLLASPEEDPSEDDSIKDSLGTE 374

Query: 208 LEAPS 222
              PS
Sbjct: 375 QSYPS 379


>sp|Q6PGH2|HN1L_MOUSE Hematological and neurological expressed
           1-like protein OS=Mus musculus GN=Hn1l PE=2 SV=1
          Length = 190

 Score = 31.2 bits (69), Expect = 5.4
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +1

Query: 88  IARTSFLPTER-KNIDKPTHVASSRPSESSDAGTKRGLKEQLEAPSGRGKGLIGQPV 255
           +A   F PTE  KNI K T+    + S   D  T    +++L  P G+   + G PV
Sbjct: 43  MASNIFGPTEEPKNIPKRTNPPGGKGSGIFDESTPVQTRQRLNPPGGKTSDIFGSPV 99


>sp|P53617|NRD1_YEAST Protein NRD1 OS=Saccharomyces cerevisiae
           GN=NRD1 PE=1 SV=1
          Length = 575

 Score = 30.8 bits (68), Expect = 7.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 34  HAPTSPCPLQSPQLAASPIARTSFLPTERKN 126
           +AP  P P Q P  AA P+ +  F PT + N
Sbjct: 529 YAPNQPLPSQGPAAAAPPVPQQQFDPTAQLN 559


>sp|Q96NZ1|FOXN4_HUMAN Forkhead box protein N4 OS=Homo sapiens
           GN=FOXN4 PE=2 SV=2
          Length = 517

 Score = 30.8 bits (68), Expect = 7.0
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +1

Query: 4   MHQQRSILSHHAPTSPCPLQSPQLAASPIARTSFLP 111
           +H Q    +H AP SP P Q+P L A P    S LP
Sbjct: 361 LHHQVQPQAHLAPDSPAPAQTPPLHALPDLSPSPLP 396


>sp|P70298|CUX2_MOUSE Homeobox protein cut-like 2 OS=Mus musculus
           GN=Cux2 PE=2 SV=1
          Length = 1426

 Score = 30.8 bits (68), Expect = 7.0
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 11/72 (15%)
 Frame = +1

Query: 43  TSPCPLQSPQLAASP-----IARTSFLPTERKNIDKPTHVASSRPSESSD------AGTK 189
           +S C L  PQ+ A P     +A+  F PT++  ++KP  +AS     S D       GT+
Sbjct: 316 SSTCSL--PQMLAKPDDPLLVAKDVFFPTQKFLLEKPALLASPEEDPSEDDSIKGSLGTE 373

Query: 190 RGLKEQLEAPSG 225
                QL  P G
Sbjct: 374 PPYPPQLPPPPG 385


>sp|Q61X54|MED1_CAEBR Mediator of RNA polymerase II transcription
           subunit 1.1 OS=Caenorhabditis briggsae GN=sop-3 PE=3
           SV=1
          Length = 1529

 Score = 30.4 bits (67), Expect = 9.1
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = +1

Query: 22  ILSHHAPTSPCPLQS-PQLAASPIARTSFLPTERKNIDKPTHVASSRPSESSDAGTKRGL 198
           + SH + TSP P++  P +  S  +   + P    ++  P   A  +  +      K+  
Sbjct: 646 LASHQSFTSPGPMRHHPYMGGSYDSPGFYGPNIPASVPFPDAAAFGKGKQRKPRAKKQP- 704

Query: 199 KEQLEAPSGRGKGLIGQ 249
            E++ APSGRGKG  G+
Sbjct: 705 GEEVAAPSGRGKGRKGR 721


>sp|P54583|GUN1_ACIC1 Endoglucanase E1 OS=Acidothermus
           cellulolyticus (strain ATCC 43068 / 11B) GN=Acel_0614
           PE=1 SV=1
          Length = 562

 Score = 30.4 bits (67), Expect = 9.1
 Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 9/97 (9%)
 Frame = +1

Query: 43  TSPCPLQSPQLAASPIARTSFLPTERKNIDK---------PTHVASSRPSESSDAGTKRG 195
           + P P  SP  + SP A  +  PT                PT  AS  PS ++ +G +  
Sbjct: 407 SQPSPSVSPSPSPSPSASRTPTPTPTPTASPTPTLTPTATPTPTASPTPSPTAASGARCT 466

Query: 196 LKEQLEAPSGRGKGLIGQPVLMERRQISVKEWSLKWS 306
              Q+   S  G G      +     ++ K W++ W+
Sbjct: 467 ASYQVN--SDWGNGFTVTVAVTNSGSVATKTWTVSWT 501
tr_hit_id A9RAY8
Definition tr|A9RAY8|A9RAY8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 94
Score (bit) 45.1
E-value 0.004
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950523|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_O04, 5'
         (681 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RAY8|A9RAY8_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.004
tr|B4GWA4|B4GWA4_DROPE GL16486 OS=Drosophila persimilis GN=GL164...    39   0.40 
tr|B5DLK9|B5DLK9_DROPS GA22604 OS=Drosophila pseudoobscura pseud...    38   0.69 
tr|A1DE04|A1DE04_NEOFI Rho guanyl nucleotide exchange factor, pu...    37   1.5  
tr|Q2W378|Q2W378_MAGMM Periplasmic protein TonB, links inner and...    36   2.0  
tr|B6KMR9|B6KMR9_TOXGO Putative uncharacterized protein OS=Toxop...    36   2.0  
tr|B6KES0|B6KES0_TOXGO Putative uncharacterized protein OS=Toxop...    36   2.6  
tr|B4J1P7|B4J1P7_DROGR GH14929 OS=Drosophila grimshawi GN=GH1492...    35   3.4  
tr|Q00V17|Q00V17_OSTTA Chromatin remodeling complex WSTF-ISWI, l...    35   5.8  
tr|B6U0S2|B6U0S2_MAIZE PHD-finger family protein OS=Zea mays PE=...    35   5.8  
tr|Q4WVF2|Q4WVF2_ASPFU Rho guanyl nucleotide exchange factor, pu...    35   5.8  
tr|B2ASC8|B2ASC8_PODAN Predicted CDS Pa_1_23090 OS=Podospora ans...    35   5.8  
tr|B0Y133|B0Y133_ASPFC Rho guanyl nucleotide exchange factor, pu...    35   5.8  
tr|B7FXY6|B7FXY6_PHATR Predicted protein OS=Phaeodactylum tricor...    34   9.8  
tr|A8J3A1|A8J3A1_CHLRE Predicted protein (Fragment) OS=Chlamydom...    34   9.8  
tr|B3SAS1|B3SAS1_TRIAD Putative uncharacterized protein OS=Trich...    34   9.8  
tr|Q9VZX2|Q9VZX2_DROME CG9973 OS=Drosophila melanogaster GN=CG99...    34   9.9  
tr|B4QNM6|B4QNM6_DROSI GD13370 OS=Drosophila simulans GN=GD13370...    34   9.9  
tr|B4HTH2|B4HTH2_DROSE GM14099 OS=Drosophila sechellia GN=GM1409...    34   9.9  
tr|A4H4U2|A4H4U2_LEIBR Putative uncharacterized protein OS=Leish...    34   9.9  

>tr|A9RAY8|A9RAY8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_63700 PE=4 SV=1
          Length = 708

 Score = 45.1 bits (105), Expect = 0.004
 Identities = 28/94 (29%), Positives = 36/94 (38%), Gaps = 8/94 (8%)
 Frame = +3

Query: 414 SAPHEDLKVHLIELVKKQTWPVYLAERLDKEQFKRIARAAVHSLLAVC--------DXXX 569
           S    +LK  L   VK +  P+Y    +DK Q  RIAR A   LLA              
Sbjct: 602 SGERRELKEQLAHYVKTELKPLYRLGHIDKRQHIRIARLATQELLAAFGIEHRGPETRAF 661

Query: 570 XXXXXXCRHLEDHGKDPIVNCCTKCLQQHVENAV 671
                 C HL         NCC +C++ +V   V
Sbjct: 662 GSFSTACTHLSSSSSSVFPNCCMQCVKHNVSKVV 695


>tr|B4GWA4|B4GWA4_DROPE GL16486 OS=Drosophila persimilis GN=GL16486
           PE=4 SV=1
          Length = 1480

 Score = 38.5 bits (88), Expect = 0.40
 Identities = 23/68 (33%), Positives = 31/68 (45%)
 Frame = +1

Query: 4   MHQQRSILSHHAPTSPCPLQSPQLAASPIARTSFLPTERKNIDKPTHVASSRPSESSDAG 183
           M+ Q   L HHA   P P   P LA SP +   F PT          +ASS P +   A 
Sbjct: 1   MYGQHQRLHHHAGRGPAPPPPPPLAPSPASVLDFYPT-------TAFLASSSPRDQDQAT 53

Query: 184 TKRGLKEQ 207
           T+  ++E+
Sbjct: 54  TQDNVQEE 61


>tr|B5DLK9|B5DLK9_DROPS GA22604 OS=Drosophila pseudoobscura
            pseudoobscura GN=GA22604 PE=4 SV=1
          Length = 5496

 Score = 37.7 bits (86), Expect = 0.69
 Identities = 25/83 (30%), Positives = 36/83 (43%)
 Frame = +1

Query: 4    MHQQRSILSHHAPTSPCPLQSPQLAASPIARTSFLPTERKNIDKPTHVASSRPSESSDAG 183
            M+ Q   L HHA   P P   P LA SP +   F PT          +ASS   +   A 
Sbjct: 3730 MYGQHQRLHHHAGRGPAPPPPPPLAPSPASVLDFYPT-------TAFLASSSSRDQDQAP 3782

Query: 184  TKRGLKEQLEAPSGRGKGLIGQP 252
            T+  ++E+    S    G++ +P
Sbjct: 3783 TQENVQEEEVNVSLLQPGILDEP 3805


>tr|A1DE04|A1DE04_NEOFI Rho guanyl nucleotide exchange factor,
            putative OS=Neosartorya fischeri (strain ATCC 1020 / DSM
            3700 / NRRL 181) GN=NFIA_075410 PE=4 SV=1
          Length = 1551

 Score = 36.6 bits (83), Expect = 1.5
 Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
 Frame = +1

Query: 28   SHHAPTSPCPLQSPQLAASPIART---SFLPTERKNIDKPTHVASSRPSESSDAGTKRGL 198
            S +  TSP    SP   ASP  R+      P+ ++NID PT   + RP +     T    
Sbjct: 1252 STNRSTSPTKSNSPSRLASPSRRSPTRPVTPSRKENID-PTLSRTDRPPQKKSDLTVSPT 1310

Query: 199  KEQ------LEAPSGRGKGLIGQPVLM 261
            +EQ      L  PS R  GL  +PVL+
Sbjct: 1311 QEQKRRLRALSIPSSRNVGLKERPVLV 1337


>tr|Q2W378|Q2W378_MAGMM Periplasmic protein TonB, links inner and
           outer membranes OS=Magnetospirillum magneticum (strain
           AMB-1 / ATCC 700264) GN=amb2893 PE=4 SV=1
          Length = 255

 Score = 36.2 bits (82), Expect = 2.0
 Identities = 20/48 (41%), Positives = 26/48 (54%)
 Frame = +1

Query: 40  PTSPCPLQSPQLAASPIARTSFLPTERKNIDKPTHVASSRPSESSDAG 183
           P  P P+Q PQL A+P A TS  P +     +P   A   P+ SSD+G
Sbjct: 88  PLPPLPVQRPQLQAAPHAETSKAP-QASTRPEPAKPAGQSPTLSSDSG 134


>tr|B6KMR9|B6KMR9_TOXGO Putative uncharacterized protein OS=Toxoplasma
            gondii ME49 GN=TGME49_084040 PE=4 SV=1
          Length = 1841

 Score = 36.2 bits (82), Expect = 2.0
 Identities = 27/84 (32%), Positives = 37/84 (44%)
 Frame = +1

Query: 19   SILSHHAPTSPCPLQSPQLAASPIARTSFLPTERKNIDKPTHVASSRPSESSDAGTKRGL 198
            S L+  AP   CPL SP  ++  + R   L     +   P   A S P   + A  K+  
Sbjct: 1417 SYLASAAPRHLCPLVSPSHSSMSLFRLFPLLLREDSASAPATAAPS-PFAEAAATQKKLN 1475

Query: 199  KEQLEAPSGRGKGLIGQPVLMERR 270
            KEQ E   GRG+  + +    ERR
Sbjct: 1476 KEQEERQGGRGETYLAERAAKERR 1499


>tr|B6KES0|B6KES0_TOXGO Putative uncharacterized protein
           OS=Toxoplasma gondii ME49 GN=TGME49_026900 PE=4 SV=1
          Length = 826

 Score = 35.8 bits (81), Expect = 2.6
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
 Frame = +1

Query: 28  SHHAPTSPCPLQSPQLAASPIARTSFLPTERKNIDKPTHV----ASSRPSESSDAGTKRG 195
           SHH PT P    +P L++S +A +S L T   ++  P H+    +S+ PS  S +     
Sbjct: 233 SHHTPTGPFLSSAPSLSSSSLASSSHL-TSSPSLPSPAHLPALCSSTHPSSLSSSPQSSS 291

Query: 196 LKEQLEAPSGRGKGLIGQP 252
           L   +      G   +  P
Sbjct: 292 LSSAVHPQGVPGVSAVAAP 310


>tr|B4J1P7|B4J1P7_DROGR GH14929 OS=Drosophila grimshawi GN=GH14929
           PE=4 SV=1
          Length = 981

 Score = 35.4 bits (80), Expect = 3.4
 Identities = 19/50 (38%), Positives = 28/50 (56%)
 Frame = +1

Query: 40  PTSPCPLQSPQLAASPIARTSFLPTERKNIDKPTHVASSRPSESSDAGTK 189
           P++P P  SP+ + SPIA+T    T+R N  KPT +  S   E   + +K
Sbjct: 373 PSTP-PQSSPKASTSPIAKTKRKYTKRVNAAKPTELTESENDEQPSSPSK 421


>tr|Q00V17|Q00V17_OSTTA Chromatin remodeling complex WSTF-ISWI,
           large subunit (Contains heterochromatin localization,
           PHD and BROMO domains) (ISS) OS=Ostreococcus tauri
           GN=Ot15g01910 PE=4 SV=1
          Length = 399

 Score = 34.7 bits (78), Expect = 5.8
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +3

Query: 378 HPKESNGTKSC-FSAPHEDLKVHLIELVKKQTWPVYLAERLDKEQFKRIARAAVHSLLA 551
           HP +S  +     S+P ++ K      VK    P+Y A R+ +E++K +AR AV  ++A
Sbjct: 319 HPSKSKTSPPLKISSPSKETKFAAAARVKDVLRPLYAAGRITRERYKDVARVAVERVIA 377


>tr|B6U0S2|B6U0S2_MAIZE PHD-finger family protein OS=Zea mays PE=2
           SV=1
          Length = 733

 Score = 34.7 bits (78), Expect = 5.8
 Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 9/119 (7%)
 Frame = +3

Query: 351 NGTDKNSVAHPKESNGTKSCFSAPHEDLKVHLIELVKKQTWPVYLAERLDKEQFKRIARA 530
           + +++ S    K S  T     +    L +  ++L+K       + +    ++FK +AR 
Sbjct: 609 HSSERCSDQRSKRSRSTCKIAKSEISSLAIRELKLLK-------IDKTHGSDRFKEVART 661

Query: 531 AVHSLLAVC------DXXXXXXXXXCRH---LEDHGKDPIVNCCTKCLQQHVENAVRTA 680
           A HS+LA C                C+H   ++      I + C +CL   V+ AV  A
Sbjct: 662 ATHSILAACRFEHSPSQSLALSRPVCKHSPKVKQLNSSAITDFCRECLHNFVKEAVSLA 720