DK950256
Clone id TST38A01NGRL0008_C20
Library
Length 664
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0008_C20. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence
AAAAAGTTGGGCTCCTCCTCCCTCGTCATTCTTTCTTCTAGGGTTCTTGAGGCTGCTTTG
CCATCCTCTGAAGTGCTCAATTCGCCATGTCCATTGCCCCACTCCCTACGCTTACCTGCC
GCTCCTGAGCTTTGATTCACCATTGGGCTCCGACCATATTGATCCACGAGCTTAAATCTT
TCTGTGTTTGCTCCTGCCATTTTCGCCCAATTCGAATTGGCCATGGCGTCCGGCGATAAA
ACCGTTGCTTTGGTTTCCTTCGCTTTGTAGCCTTCGCTGTGGCCATGGCTGTAGCTTTGG
CTATGGCTATGGTTGAATAATTGAGTCTTCTCCGCTCCTTTATGCACAGCTTCATCGTTC
TGGAATTGTTCTGCAAGGTGTGGCTTCTCCCTGGAAAGGTCAACTGCGACAATGCGTGAC
GGTCAAGGGTGTCTGCTTCCGGTGCTACACAGCCCTTTGGCTCCCCTTGTTTTGGAGGAG
AACCCCATTGGTTCGGCATCATGGGTGCTACCCCAGATTTGCAGAGCAGAGGTTATATCT
CAGCTCCCAGAGGTATTGTCTTCTTCTCTTTCACCTGTGAATTCAGGACAGAACTCTGTG
CCTGGCAAGAGAAAGAGGCTGCACAAGTGTAAAGATGCCATGGGAGGGCCTGGCTATGGT
GGTG
■■Homology search results ■■ -
sp_hit_id P40376
Definition sp|P40376|KAPB_SCHPO cAMP-dependent protein kinase catalytic subunit OS=Schizosaccharomyces pombe
Align length 167
Score (bit) 33.5
E-value 1.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950256|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_C20, 5'
(664 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P40376|KAPB_SCHPO cAMP-dependent protein kinase catalytic sub... 33 1.0
sp|Q9I8F8|PA2_BOTPC Phospholipase A2 OS=Bothrops pictus PE=2 SV=1 33 1.8
sp|Q02957|KRA61_RABIT Keratin, glycine/tyrosine-rich of hair OS=... 31 5.2

>sp|P40376|KAPB_SCHPO cAMP-dependent protein kinase catalytic
subunit OS=Schizosaccharomyces pombe GN=pka1 PE=1 SV=1
Length = 512

Score = 33.5 bits (75), Expect = 1.0
Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 5/167 (2%)
Frame = -3

Query: 533 TSALQIWGSTHDAEPMGFSSKTRGAKGLCSTGSRHP*PSRIVAVDLSREKPHLAEQFQND 354
T+A+ GST+ +G S+ T L ++ S HP + + S ++ H F
Sbjct: 3 TTAVASKGSTN----VGSSTDT-----LSTSASLHPSMNAGSVNEYSEQQRHGTNSFNGK 53

Query: 353 EAVHKGA-EKTQLFNXXXXXXXXXXXSEGY-KAKETKATVLSPDAMANSNWAKMAGANTE 180
+VH + N + G KA E PD++ +++ + A A++
Sbjct: 54 PSVHDSVGSDASVSNGHNNHNESSLWTSGIPKALEEATKSKKPDSLVSTSTSGCASAHSV 113

Query: 179 RFKLVDQYGRSPM---VNQSSGAAGKRREWGNGHGELSTSEDGKAAS 48
++ +D SP+ ++SS + +R +G GEL SE G+ S
Sbjct: 114 GYQNIDNLIPSPLPESASRSSSQSSHQRHSRDGRGELG-SEHGERRS 159


>sp|Q9I8F8|PA2_BOTPC Phospholipase A2 OS=Bothrops pictus PE=2 SV=1
Length = 122

Score = 32.7 bits (73), Expect = 1.8
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 15/80 (18%)
Frame = +2

Query: 248 LWFPSLCSLRCGHG-----------CSFGYG--YG*IIESSPL--LYAQLHRSGIVLQGV 382
+WF CG G C F + YG + + P +Y +G+V+ G
Sbjct: 18 VWFYGSYGCFCGSGGQGRPQDASDRCCFVHDCCYGKVTDCDPKTDIYTYSEENGVVVCGG 77

Query: 383 ASPWKGQLRQCVTVKGVCFR 442
P K Q+ +C V VCFR
Sbjct: 78 DDPCKKQICECDRVAAVCFR 97


>sp|Q02957|KRA61_RABIT Keratin, glycine/tyrosine-rich of hair
OS=Oryctolagus cuniculus GN=KAP6-1 PE=2 SV=2
Length = 80

Score = 31.2 bits (69), Expect = 5.2
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2

Query: 272 LRCGHGCSFGYGYG 313
L CG+GC +GYGYG
Sbjct: 44 LGCGYGCGYGYGYG 57


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950256|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_C20, 5'
(664 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******