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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950220
Clone id TST38A01NGRL0008_B08
Library
Length 637
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0008_B08. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
CACACACACACACACACACACACACACACACACACACACACACACACACACACACACACA
CACGTGGTTTACTGCTATTCGCTTTTAGTGTGGCTCTTGAGGATGACAAGTGTTGAGGAT
ACAAGCATGATGCTCGCCTTTCAGGCGAAGTCTGGAAGCAACTGTGCCGCCTATGCTCCC
GCTCCCTCACCTATGGAGTGTTCCCCAGTAACCATTTCAGCAGAGGATCTGGATCTTCTT
ATCTGCTCGGGGTCGCTCGAACAAGAAATGTTATTGCTCTCTGGACTCGAGCCATCCCCT
TCTGCAATGGCCATGCACGGCGATGAATTTAGCTGCCTACTAGAGCATTTTGATAAGTGG
AGCTCACCTGTAGAGCCCATGTTTTCCACATGGAACCCTCGGTTTTGTTATCAGAAGGAT
ATGGCGGATGTGGCCTTGAGTGAGACTATCCAGTCGGGCAGCCTTAAATCAGGCAAGGAC
CAGAAAAACAGATATGAGGAAAAAGAAGTTTGTGAGAAGCGGAAGACTGCTCTTGCATCC
TCTAATACCCCTTTGAAGGCAGTAACACCTTCGGGAAGGAGGATTTGGAAGGGTGGTCCA
CCGGCCATGACAAGGTCTAGCTCGAAGTCTCGTCTTT
■■Homology search results ■■ -
sp_hit_id Q8BK58
Definition sp|Q8BK58|HBAP1_MOUSE HSPB1-associated protein 1 OS=Mus musculus
Align length 82
Score (bit) 38.5
E-value 0.03
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950220|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_B08, 5'
         (637 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8BK58|HBAP1_MOUSE HSPB1-associated protein 1 OS=Mus musculus...    39   0.030
sp|P09514|MCAPS_TYYVF Minor capsid protein OS=Turnip yellows vir...    33   0.95 
sp|Q5BKC6|HBAP1_RAT HSPB1-associated protein 1 OS=Rattus norvegi...    32   3.6  
sp|Q9LP03|PPR73_ARATH Pentatricopeptide repeat-containing protei...    31   4.7  
sp|P74644|KAIA_SYNY3 Circadian clock protein kaiA OS=Synechocyst...    31   4.7  
sp|Q6PGN9|PSRC1_HUMAN Proline/serine-rich coiled-coil protein 1 ...    31   6.2  
sp|P75503|Y274_MYCPN Uncharacterized protein MG133 homolog OS=My...    30   8.0  
sp|Q8K327|ZN828_MOUSE Zinc finger protein 828 OS=Mus musculus GN...    30   8.1  
sp|Q6UXM1|LRIG3_HUMAN Leucine-rich repeats and immunoglobulin-li...    30   8.1  

>sp|Q8BK58|HBAP1_MOUSE HSPB1-associated protein 1 OS=Mus musculus
           GN=Hspbap1 PE=1 SV=1
          Length = 483

 Score = 38.5 bits (88), Expect = 0.030
 Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
 Frame = -1

Query: 295 MARVQRAITFLVRATPSR*EDPDPLLKWLLGNTP*VREREHRRHSCFQTSPERRASCLYP 116
           +ARV+ AIT ++  T    EDP     WL  N   V E  H  +SC+  S    A C + 
Sbjct: 280 LARVEEAITRMLVCTLKTAEDPHHPRTWL--NPTEVEETSHEVNSCYLNS----AVCAFF 333

Query: 115 QHLSSSRA----TLKANSSKPR 62
            H   ++A     L AN ++PR
Sbjct: 334 DHCEKAKAVELQVLSANGAEPR 355


>sp|P09514|MCAPS_TYYVF Minor capsid protein OS=Turnip yellows virus
           (isolate FL-1) GN=ORF3/ORF5 PE=1 SV=2
          Length = 670

 Score = 33.5 bits (75), Expect = 0.95
 Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 3/109 (2%)
 Frame = +1

Query: 232 DLLICSGSLEQEMLLLSGLEPSPSAMAMHGDEFSCLLEHFDKWSSPVEPMFSTWNPRFCY 411
           DL   +   E+ M   SGL P      +   +    + +FD    P   +   W P    
Sbjct: 514 DLSTKNSQEEEAMSSESGLRPQLKPPGLPKPQPIRTIRNFD----PTPDLVEAWRPDVNP 569

Query: 412 QKDMADVALSETIQSGSLKSGKDQKNRYEEKEVCEKRK---TALASSNT 549
               ADVA +  I  GS+K G+   ++   K V + RK   ++LASS T
Sbjct: 570 GYSKADVAAATIIAGGSIKDGRSMIDK-RNKAVLDGRKSWGSSLASSLT 617


>sp|Q5BKC6|HBAP1_RAT HSPB1-associated protein 1 OS=Rattus norvegicus
           GN=Hspbap1 PE=1 SV=1
          Length = 479

 Score = 31.6 bits (70), Expect = 3.6
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
 Frame = -1

Query: 295 MARVQRAITFLVRATPSR*EDPDPLLKWLLGNTP*VREREHRRHSCFQTSPERRASCLYP 116
           +ARV+ A+T ++  T    EDP     WL  N   V E  H  +SC+  S    A C + 
Sbjct: 280 LARVEEAVTRMLVCTLKTAEDPHHPRTWL--NPTEVEETSHEVNSCYLNS----AVCAFF 333

Query: 115 QHLSSSR----ATLKANSSKP 65
            H   ++       +AN  +P
Sbjct: 334 DHCERAKEVEMQAPRANGEEP 354


>sp|Q9LP03|PPR73_ARATH Pentatricopeptide repeat-containing protein
           At1g43980, mitochondrial OS=Arabidopsis thaliana
           GN=PCMP-E58 PE=2 SV=1
          Length = 633

 Score = 31.2 bits (69), Expect = 4.7
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 367 PVEPMFSTWNPRFCYQKDMADVALSETIQSGSLKS 471
           P EP    W P  C   D+ D  L+ET+    L+S
Sbjct: 512 PFEPSSHIWEPILCASLDLGDTRLAETVAKTMLES 546


>sp|P74644|KAIA_SYNY3 Circadian clock protein kaiA OS=Synechocystis
           sp. (strain PCC 6803) GN=kaiA PE=3 SV=1
          Length = 299

 Score = 31.2 bits (69), Expect = 4.7
 Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = +1

Query: 97  LRMTSVEDTSMMLAFQAKSGSNCAAYAPAPSPMECSPVTISAEDLDLLICSGSLEQEMLL 276
           LR     D   +  FQA     CA     P  ++C  V   A  L +L  +   EQ  LL
Sbjct: 19  LRSIFQGDRHYLSTFQALDDF-CAFLEDKPERIDCLLVYYEANSLPVL--NRLYEQGRLL 75

Query: 277 -LSGLEPSPSAMAMHGDEFSCLLEH 348
            +  LEPSPSA+A   DE   ++ H
Sbjct: 76  PIILLEPSPSALAKTTDEHPTIVYH 100


>sp|Q6PGN9|PSRC1_HUMAN Proline/serine-rich coiled-coil protein 1
           OS=Homo sapiens GN=PSRC1 PE=1 SV=1
          Length = 363

 Score = 30.8 bits (68), Expect = 6.2
 Identities = 39/165 (23%), Positives = 62/165 (37%), Gaps = 10/165 (6%)
 Frame = +1

Query: 169 AYAPAPSPMECSPVTISAEDLDLLICSGS---LEQEMLLLSGLEPSPSAMAMHGDEFSCL 339
           A APAP  +  S   +S E L+ ++   +    + E   L   E +   +     + S  
Sbjct: 54  AVAPAPQGVRLSLGPLSPEKLEEILDEANRLAAQLEQCALQDRESAGEGLGPRRVKPSPR 113

Query: 340 LEHFDKWSSPVEPMFSTWNP--RFCYQKDMADVALSETIQSGSLK-----SGKDQKNRYE 498
            E F    SPV  +  T N   R           L    + GS++     SGK   N   
Sbjct: 114 RETFVLKDSPVRDLLPTVNSLTRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKR 173

Query: 499 EKEVCEKRKTALASSNTPLKAVTPSGRRIWKGGPPAMTRSSSKSR 633
           E   C     + + +++PL   TP  R   + GP     +S ++R
Sbjct: 174 ESPTCNLFPASKSPASSPLTRSTPPVR--GRAGPSGRAAASEETR 216


>sp|P75503|Y274_MYCPN Uncharacterized protein MG133 homolog
           OS=Mycoplasma pneumoniae GN=MPN_274 PE=4 SV=1
          Length = 266

 Score = 30.4 bits (67), Expect = 8.0
 Identities = 10/16 (62%), Positives = 15/16 (93%)
 Frame = -3

Query: 518 FSQTSFSSYLFFWSLP 471
           FSQT ++SY++FWS+P
Sbjct: 222 FSQTKYNSYVWFWSIP 237


>sp|Q8K327|ZN828_MOUSE Zinc finger protein 828 OS=Mus musculus
           GN=Znf828 PE=1 SV=1
          Length = 802

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 8/91 (8%)
 Frame = +1

Query: 355 KWSSPVEPMF-STWNP-------RFCYQKDMADVALSETIQSGSLKSGKDQKNRYEEKEV 510
           K S PV+PM    W P        +     M+  +   ++ SGS K+       ++    
Sbjct: 325 KSSKPVQPMSPGPWKPIPSVSPGPWKPAPSMSTASWKSSVSSGSWKTPPTSPESWKSGPP 384

Query: 511 CEKRKTALASSNTPLKAVTPSGRRIWKGGPP 603
            E RKTAL  S    KAV P    + + GPP
Sbjct: 385 -ELRKTALPLSPEHWKAVPPVSPELRRPGPP 414


>sp|Q6UXM1|LRIG3_HUMAN Leucine-rich repeats and immunoglobulin-like
            domains protein 3 OS=Homo sapiens GN=LRIG3 PE=2 SV=1
          Length = 1119

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 23/69 (33%), Positives = 35/69 (50%)
 Frame = +1

Query: 346  HFDKWSSPVEPMFSTWNPRFCYQKDMADVALSETIQSGSLKSGKDQKNRYEEKEVCEKRK 525
            H D +SS  +P  S   PR  Y K  +    S  + SGS + GK++ +  EE  +C  ++
Sbjct: 1049 HLDAYSSFGQP--SDCQPRAFYLKAHS----SPDLDSGSEEDGKERTDFQEENHICTFKQ 1102

Query: 526  TALASSNTP 552
            T L +  TP
Sbjct: 1103 T-LENYRTP 1110
tr_hit_id B3FGU1
Definition tr|B3FGU1|B3FGU1_9LUTE Read-through protein P5 OS=Cucurbit aphid-borne yellows virus
Align length 64
Score (bit) 38.1
E-value 0.45
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950220|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0008_B08, 5'
         (637 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3FGU1|B3FGU1_9LUTE Read-through protein P5 OS=Cucurbit aphid...    38   0.45 
tr|O73685|O73685_CHICK G-protein coupled receptor kinase 1 OS=Ga...    37   1.3  
tr|Q65972|Q65972_9LUTE Putative uncharacterized protein OS=Cucur...    36   2.3  
tr|Q8CGS6|Q8CGS6_MOUSE DNA polymerase theta short isoform OS=Mus...    36   2.3  
tr|Q80XB7|Q80XB7_MOUSE DNA polymerase theta OS=Mus musculus GN=P...    36   2.3  
tr|Q7TQC0|Q7TQC0_MOUSE DNA polymerase Q OS=Mus musculus GN=Polq ...    36   2.3  
tr|Q3U1F8|Q3U1F8_MOUSE Putative uncharacterized protein (Fragmen...    36   2.3  
tr|A2SCZ5|A2SCZ5_METPP Hydrolase, putative OS=Methylibium petrol...    35   3.8  
tr|B7T510|B7T510_OREMO Prolactin receptor 1 OS=Oreochromis mossa...    35   5.0  
tr|B8MHH6|B8MHH6_9EURO Putative uncharacterized protein OS=Talar...    34   6.5  

>tr|B3FGU1|B3FGU1_9LUTE Read-through protein P5 OS=Cucurbit
           aphid-borne yellows virus PE=4 SV=1
          Length = 668

 Score = 38.1 bits (87), Expect = 0.45
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = +1

Query: 364 SPVEPMFSTWNPRFCYQKDMADVALSETIQSGSLKSGKDQKNRYEEKEVCEKRKTALASS 543
           +P   +   W P    +   ADVA +  I  GS+  G+D   R +EK +  ++K  + SS
Sbjct: 554 NPNPDLVEAWRPDLAPEYSKADVAAATVIAGGSIHEGRDMLRRRDEKVMDSRKKWGVLSS 613

Query: 544 NTPL 555
            + L
Sbjct: 614 ASSL 617


>tr|O73685|O73685_CHICK G-protein coupled receptor kinase 1
           OS=Gallus gallus GN=GRK1 PE=2 SV=1
          Length = 593

 Score = 36.6 bits (83), Expect = 1.3
 Identities = 24/75 (32%), Positives = 32/75 (42%)
 Frame = +1

Query: 241 ICSGSLEQEMLLLSGLEPSPSAMAMHGDEFSCLLEHFDKWSSPVEPMFSTWNPRFCYQKD 420
           +C G L ++     G      AM      FS L  H+  WS P  P F   +PR  Y KD
Sbjct: 456 LCEGLLAKDPQKRLGFRDGNCAMLRSQPVFSAL--HWGSWSGPPPPPFVP-DPRRVYAKD 512

Query: 421 MADVALSETIQSGSL 465
           + DV    T++   L
Sbjct: 513 LGDVGAFSTVRGVEL 527


>tr|Q65972|Q65972_9LUTE Putative uncharacterized protein OS=Cucurbit
           aphid-borne yellows virus PE=4 SV=2
          Length = 667

 Score = 35.8 bits (81), Expect = 2.3
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +1

Query: 364 SPVEPMFSTWNPRFCYQKDMADVALSETIQSGSLKSGKDQKNRYEEKEVCEKRKTALASS 543
           +P   +   W P        ADVA +  +  GS+  G+D   R E K +  ++K  + SS
Sbjct: 553 NPGPDLIEVWRPDLAPGYSKADVAAATVLAGGSVHEGRDMLERREAKVMDSRKKWGILSS 612

Query: 544 NTPL 555
            + L
Sbjct: 613 TSSL 616


>tr|Q8CGS6|Q8CGS6_MOUSE DNA polymerase theta short isoform OS=Mus
           musculus GN=Polq PE=2 SV=1
          Length = 2265

 Score = 35.8 bits (81), Expect = 2.3
 Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
 Frame = +1

Query: 253 SLEQEMLLLSGLEPSPSAMAMHG-DEFSCLLEHFDKWSSPVEPMFSTWNPRFCYQKDMAD 429
           S+ +  +  SG    PS  A  G D+ S   +   K+    EP      P  C  +    
Sbjct: 652 SMGRNSIRASGSNDKPSPDAERGIDDCSEHADSLCKFQGNFEPQ----TPSICTARKRTS 707

Query: 430 VALSETIQSGSLKSGKDQKNRYEEKEVCEK-RKTALASSNTPLKAVTPSGR 579
           + +++ +   SLK GK       +    EK RKTAL+ S+  +    PSGR
Sbjct: 708 LGINKEMLRKSLKEGKPSTKEVLQTFSSEKTRKTALSFSSEQVNNTLPSGR 758


>tr|Q80XB7|Q80XB7_MOUSE DNA polymerase theta OS=Mus musculus GN=Polq
            PE=2 SV=1
          Length = 2544

 Score = 35.8 bits (81), Expect = 2.3
 Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
 Frame = +1

Query: 253  SLEQEMLLLSGLEPSPSAMAMHG-DEFSCLLEHFDKWSSPVEPMFSTWNPRFCYQKDMAD 429
            S+ +  +  SG    PS  A  G D+ S   +   K+    EP      P  C  +    
Sbjct: 931  SMGRNSIRASGSNDKPSPDAERGIDDCSEHADSLCKFQGNFEPQ----TPSICTARKRTS 986

Query: 430  VALSETIQSGSLKSGKDQKNRYEEKEVCEK-RKTALASSNTPLKAVTPSGR 579
            + +++ +   SLK GK       +    EK RKTAL+ S+  +    PSGR
Sbjct: 987  LGINKEMLRKSLKEGKPSTKEVLQTFSSEKTRKTALSFSSEQVNNTLPSGR 1037


>tr|Q7TQC0|Q7TQC0_MOUSE DNA polymerase Q OS=Mus musculus GN=Polq PE=1
            SV=1
          Length = 2587

 Score = 35.8 bits (81), Expect = 2.3
 Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
 Frame = +1

Query: 253  SLEQEMLLLSGLEPSPSAMAMHG-DEFSCLLEHFDKWSSPVEPMFSTWNPRFCYQKDMAD 429
            S+ +  +  SG    PS  A  G D+ S   +   K+    EP      P  C  +    
Sbjct: 974  SMGRNSIRASGSNDKPSPDAERGIDDCSEHADSLCKFQGNFEPQ----TPSICTARKRTS 1029

Query: 430  VALSETIQSGSLKSGKDQKNRYEEKEVCEK-RKTALASSNTPLKAVTPSGR 579
            + +++ +   SLK GK       +    EK RKTAL+ S+  +    PSGR
Sbjct: 1030 LGINKEMLRKSLKEGKPSTKEVLQTFSSEKTRKTALSFSSEQVNNTLPSGR 1080


>tr|Q3U1F8|Q3U1F8_MOUSE Putative uncharacterized protein (Fragment)
           OS=Mus musculus GN=Polq PE=2 SV=1
          Length = 929

 Score = 35.8 bits (81), Expect = 2.3
 Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
 Frame = +1

Query: 253 SLEQEMLLLSGLEPSPSAMAMHG-DEFSCLLEHFDKWSSPVEPMFSTWNPRFCYQKDMAD 429
           S+ +  +  SG    PS  A  G D+ S   +   K+    EP      P  C  +    
Sbjct: 404 SMGRNSIRASGSNDKPSPDAERGIDDCSEHADSLCKFQGNFEPQ----TPSICTARKRTS 459

Query: 430 VALSETIQSGSLKSGKDQKNRYEEKEVCEK-RKTALASSNTPLKAVTPSGR 579
           + +++ +   SLK GK       +    EK RKTAL+ S+  +    PSGR
Sbjct: 460 LGINKEMLRKSLKEGKPSTKEVLQTFSSEKTRKTALSFSSEQVNNTLPSGR 510


>tr|A2SCZ5|A2SCZ5_METPP Hydrolase, putative OS=Methylibium
           petroleiphilum (strain PM1) GN=Mpe_A0472 PE=4 SV=1
          Length = 298

 Score = 35.0 bits (79), Expect = 3.8
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
 Frame = -3

Query: 611 VMAGGPPFQILLPEGVTAFKGVLEDARAVFRFSQTSFSSYLFFW----SLPDLRLPDWIV 444
           ++AG P F++   +G TA   VL D     R S   F+  L F     + P  RLPDW+ 
Sbjct: 152 LLAGNPRFELRELKGHTASDLVLVD-----RISGVVFAGGLVFVDRVPTTPHARLPDWLA 206

Query: 443 SLKATSAISF 414
           SL A +A  F
Sbjct: 207 SLDALAAQPF 216


>tr|B7T510|B7T510_OREMO Prolactin receptor 1 OS=Oreochromis
           mossambicus PE=2 SV=1
          Length = 630

 Score = 34.7 bits (78), Expect = 5.0
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = +1

Query: 88  VWLLRMTSVEDTSMMLAFQAKSGSNCAAYAPAPSPMECSPVTISAEDLDLLICSGSLE 261
           V LL+   VE+ SM +   A+S    +     P P  CSP+ +S +D  +L  SG ++
Sbjct: 564 VLLLQREVVEEESMEMGGAAESCYTSSIAFTTPKPTACSPIVLSVQDERVLAVSGYVD 621


>tr|B8MHH6|B8MHH6_9EURO Putative uncharacterized protein
           OS=Talaromyces stipitatus ATCC 10500 GN=TSTA_010730 PE=4
           SV=1
          Length = 1462

 Score = 34.3 bits (77), Expect = 6.5
 Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 3/107 (2%)
 Frame = +1

Query: 217 SAEDLDLLICSGSLEQEMLLLSGLEPSPSAMAMHGDEFSCLLEHFDKWSSPVEPMFSTW- 393
           S  D+D    S   E E   L+   P  +A+  H D FS  ++       P E     W 
Sbjct: 431 SLRDVDEAKASRRAEIERRCLALHPPLTAAVLSHMDSFSAAIQ------IPHELTDKDWE 484

Query: 394 --NPRFCYQKDMADVALSETIQSGSLKSGKDQKNRYEEKEVCEKRKT 528
              PR   Q++MA+    E +Q   L   K ++ R +E  + E +++
Sbjct: 485 YLKPRLLAQREMAESKEIERLQESQLLQAKTEERRQQEARLKEDKQS 531