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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950112
Clone id TST38A01NGRL0007_M17
Library
Length 659
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0007_M17. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GAGCCTTGCTAGGGCCTCATGTAGACCAACTGAGCATTCTTTGTCTGTGAACTGTATACA
TCCTTGTAGATAATTTATCTCTGAGAGCATTTGGCTGCCAGGAAGATAAGGTGGCGCCTG
TTTGATGTCGTCCAGCCTGACGATGGCTACCTCGTCCCCTCTGGCCACTTCTGTGTCAGG
TTTCACAACTGATCTTGATGACAAGTGGTTAAGTCCTGGTATCAACTCTCTATCAACAAG
AAGAACCAGTACGAAAAAGCTTGGGTTTGCCTCATGTCAAGCCTTGGGTAGTGGTATGTT
GTCGTCAGGTAGCTCCAGGGGGACCCGGACATCAAGACAGGGCCACTTAGTTGGTGTAGC
ACGCTGTGAAGTAAGTGAAGAAAAGAGTAACAGTTTGGACATATGGCTAGGACGTGCAGC
CATGCTAGGGTTTGTCAGTGTGGTCTCCGTTGAAGTTGCCACCGGAAAAGGAGTTCTAGA
GAATGCAGGTTTGGTAGCTCCTCTTCCTACGTTGGCATTGGCATTGACGGCTGTCGTGGG
GGTAGTTGTAGCTTTTGGAATCTTCCGGTCCGCTAATACTGACAGCTAGTGGCAGAATTC
GAGAACTCTCTTCATTAATCCACAGTGGGTTTGTAAACACATATNTTTGTTCTTTGCTT
■■Homology search results ■■ -
sp_hit_id Q1XDD2
Definition sp|Q1XDD2|YCF17_PORYE Uncharacterized protein ycf17 OS=Porphyra yezoensis
Align length 31
Score (bit) 40.4
E-value 0.008
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950112|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0007_M17, 5'
         (659 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q1XDD2|YCF17_PORYE Uncharacterized protein ycf17 OS=Porphyra ...    40   0.008
sp|P51355|YCF17_PORPU Uncharacterized protein ycf17 OS=Porphyra ...    39   0.024
sp|Q3MCT9|HEMH_ANAVT Ferrochelatase OS=Anabaena variabilis (stra...    36   0.21 
sp|Q8YQR8|HEMH_ANASP Ferrochelatase OS=Anabaena sp. (strain PCC ...    36   0.21 
sp|Q55GU9|MSH6_DICDI DNA mismatch repair protein Msh6 OS=Dictyos...    35   0.46 
sp|O04921|HEMH2_ARATH Ferrochelatase-2, chloroplastic OS=Arabido...    34   0.60 
sp|Q01931|DS22_CRAPL Desiccation stress protein DSP-22, chloropl...    33   1.3  
sp|Q0DIV0|HEMH_ORYSJ Ferrochelatase-2, chloroplastic OS=Oryza sa...    33   1.7  
sp|A2Y3Q5|HEMH_ORYSI Ferrochelatase-2, chloroplastic OS=Oryza sa...    33   1.7  
sp|B0JRN7|HEMH_MICAN Ferrochelatase OS=Microcystis aeruginosa (s...    32   3.0  
sp|P11432|ELI_PEA Early light-induced protein, chloroplastic OS=...    32   3.0  
sp|P14895|ELI5_HORVU High molecular mass early light-inducible p...    32   3.0  
sp|P48367|YCF17_CYAPA Uncharacterized protein ycf17 OS=Cyanophor...    32   3.9  
sp|Q5N2B2|HEMH_SYNP6 Ferrochelatase OS=Synechococcus sp. (strain...    32   3.9  
sp|Q31S00|HEMH_SYNE7 Ferrochelatase OS=Synechococcus elongatus (...    32   3.9  
sp|P27516|CBR_DUNBA Carotene biosynthesis-related protein CBR, c...    32   3.9  
sp|A5GS98|HEMH_SYNR3 Ferrochelatase OS=Synechococcus sp. (strain...    31   5.1  
sp|Q9SMB4|PSBS_TOBAC Photosystem II 22 kDa protein, chloroplasti...    31   6.6  
sp|Q9FPP4|PSBS_SOLSG Photosystem II 22 kDa protein, chloroplasti...    31   6.6  
sp|P54773|PSBS_SOLLC Photosystem II 22 kDa protein, chloroplasti...    31   6.6  
sp|Q9XF91|PSBS_ARATH Photosystem II 22 kDa protein, chloroplasti...    31   6.6  
sp|Q54PP7|LVSF_DICDI BEACH domain-containing protein lvsF OS=Dic...    31   6.6  
sp|P54225|HEMH_SYNY3 Ferrochelatase OS=Synechocystis sp. (strain...    31   6.6  

>sp|Q1XDD2|YCF17_PORYE Uncharacterized protein ycf17 OS=Porphyra
           yezoensis GN=ycf17 PE=3 SV=1
          Length = 48

 Score = 40.4 bits (93), Expect = 0.008
 Identities = 16/31 (51%), Positives = 25/31 (80%)
 Frame = +2

Query: 386 SNSLDIWLGRAAMLGFVSVVSVEVATGKGVL 478
           ++S + W GR AM+GF+SV+ +EV TG+G+L
Sbjct: 11  TDSAETWNGRFAMIGFISVIFIEVVTGQGLL 41


>sp|P51355|YCF17_PORPU Uncharacterized protein ycf17 OS=Porphyra
           purpurea GN=ycf17 PE=3 SV=1
          Length = 48

 Score = 38.9 bits (89), Expect = 0.024
 Identities = 15/31 (48%), Positives = 25/31 (80%)
 Frame = +2

Query: 386 SNSLDIWLGRAAMLGFVSVVSVEVATGKGVL 478
           ++S + W GR AM+GF++V+ +E+ TGKG+L
Sbjct: 11  TDSAETWNGRFAMIGFMAVIFIELVTGKGLL 41


>sp|Q3MCT9|HEMH_ANAVT Ferrochelatase OS=Anabaena variabilis (strain
           ATCC 29413 / PCC 7937) GN=hemH PE=3 SV=1
          Length = 388

 Score = 35.8 bits (81), Expect = 0.21
 Identities = 14/31 (45%), Positives = 26/31 (83%)
 Frame = +2

Query: 386 SNSLDIWLGRAAMLGFVSVVSVEVATGKGVL 478
           ++S ++W GR AMLGF++++ +E+ TG+G+L
Sbjct: 352 TSSAEVWNGRIAMLGFIALI-IELVTGQGLL 381


>sp|Q8YQR8|HEMH_ANASP Ferrochelatase OS=Anabaena sp. (strain PCC
           7120) GN=hemH PE=3 SV=1
          Length = 388

 Score = 35.8 bits (81), Expect = 0.21
 Identities = 14/31 (45%), Positives = 26/31 (83%)
 Frame = +2

Query: 386 SNSLDIWLGRAAMLGFVSVVSVEVATGKGVL 478
           ++S ++W GR AMLGF++++ +E+ TG+G+L
Sbjct: 352 TSSAEVWNGRIAMLGFIALI-IELVTGQGLL 381


>sp|Q55GU9|MSH6_DICDI DNA mismatch repair protein Msh6
           OS=Dictyostelium discoideum GN=msh6 PE=3 SV=1
          Length = 1260

 Score = 34.7 bits (78), Expect = 0.46
 Identities = 19/38 (50%), Positives = 24/38 (63%)
 Frame = -3

Query: 459 ATSTETTLTNPSMAARPSHMSKLLLFSSLTSQRATPTK 346
           AT+T TT TN  +   P+  SKL L +S TS+  TPTK
Sbjct: 75  ATTTTTTNTNSQIPKAPTTPSKLKLPTSFTSKSNTPTK 112


>sp|O04921|HEMH2_ARATH Ferrochelatase-2, chloroplastic
           OS=Arabidopsis thaliana GN=At2g30390 PE=2 SV=1
          Length = 512

 Score = 34.3 bits (77), Expect = 0.60
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = +2

Query: 386 SNSLDIWLGRAAMLGFVSVVSVEVATGKGVL 478
           + S + W GRAAML  ++++ +EV TGKG L
Sbjct: 473 TKSAETWNGRAAMLAVLALLVLEVTTGKGFL 503


>sp|Q01931|DS22_CRAPL Desiccation stress protein DSP-22,
           chloroplastic OS=Craterostigma plantagineum GN=DSP-22
           PE=2 SV=1
          Length = 199

 Score = 33.1 bits (74), Expect = 1.3
 Identities = 14/22 (63%), Positives = 19/22 (86%)
 Frame = +2

Query: 410 GRAAMLGFVSVVSVEVATGKGV 475
           GR+AM+GFV+ V VE+ATG+ V
Sbjct: 104 GRSAMIGFVAAVGVELATGRDV 125


>sp|Q0DIV0|HEMH_ORYSJ Ferrochelatase-2, chloroplastic OS=Oryza
           sativa subsp. japonica GN=HEMH PE=2 SV=1
          Length = 526

 Score = 32.7 bits (73), Expect = 1.7
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = +2

Query: 386 SNSLDIWLGRAAMLGFVSVVSVEVATGKGVL 478
           + S + W GRAAML  ++++ +EV TG+G L
Sbjct: 486 TKSAETWNGRAAMLAVLALLVLEVTTGEGFL 516


>sp|A2Y3Q5|HEMH_ORYSI Ferrochelatase-2, chloroplastic OS=Oryza
           sativa subsp. indica GN=HEMH PE=2 SV=2
          Length = 526

 Score = 32.7 bits (73), Expect = 1.7
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = +2

Query: 386 SNSLDIWLGRAAMLGFVSVVSVEVATGKGVL 478
           + S + W GRAAML  ++++ +EV TG+G L
Sbjct: 486 TKSAETWNGRAAMLAVLALLVLEVTTGEGFL 516


>sp|B0JRN7|HEMH_MICAN Ferrochelatase OS=Microcystis aeruginosa
           (strain NIES-843) GN=hemH PE=3 SV=1
          Length = 387

 Score = 32.0 bits (71), Expect = 3.0
 Identities = 12/31 (38%), Positives = 24/31 (77%)
 Frame = +2

Query: 386 SNSLDIWLGRAAMLGFVSVVSVEVATGKGVL 478
           + + ++W GR AM+GF++++ +E+ TG+G L
Sbjct: 352 TTAAEVWNGRLAMIGFLAII-IELITGQGPL 381
tr_hit_id A9NK68
Definition tr|A9NK68|A9NK68_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 82
Score (bit) 68.2
E-value 4.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950112|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0007_M17, 5'
         (659 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NK68|A9NK68_PICSI Putative uncharacterized protein OS=Picea...    68   4e-10
tr|A5B423|A5B423_VITVI Putative uncharacterized protein (Chromos...    62   2e-08
tr|B6SRW4|B6SRW4_MAIZE Putative uncharacterized protein OS=Zea m...    59   3e-07
tr|B6SQP2|B6SQP2_MAIZE Putative uncharacterized protein OS=Zea m...    57   1e-06
tr|A8IXP9|A8IXP9_BRACM Stress enhanced protein 1 OS=Brassica cam...    57   1e-06
tr|Q9M7I9|Q9M7I9_ARATH Stress enhanced protein 1 (At4g34190/F28A...    56   2e-06
tr|O49486|O49486_ARATH Putative uncharacterized protein AT4g3419...    56   2e-06
tr|A9PFE3|A9PFE3_POPTR Putative uncharacterized protein OS=Popul...    56   2e-06
tr|B6U7S0|B6U7S0_MAIZE Putative uncharacterized protein OS=Zea m...    55   5e-06
tr|A9TLE2|A9TLE2_PHYPA Predicted protein OS=Physcomitrella paten...    53   2e-05
tr|Q8L574|Q8L574_ORYSJ Putative stress enhanced protein (Express...    50   9e-05
tr|Q109Q6|Q109Q6_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    50   9e-05
tr|A3C4F7|A3C4F7_ORYSJ Putative uncharacterized protein OS=Oryza...    50   9e-05
tr|A2Z6X7|A2Z6X7_ORYSI Putative uncharacterized protein OS=Oryza...    50   9e-05
tr|Q109Q5|Q109Q5_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    47   0.001
tr|Q9SWB0|Q9SWB0_CAPAN Differentially expressed osmotic protein ...    42   0.026
tr|B4WNV1|B4WNV1_9SYNE Putative uncharacterized protein OS=Synec...    41   0.057
tr|A8YCW9|A8YCW9_MICAE Similarity to tr|Q9SI74|Q9SI74 (Fragment)...    38   0.63 
tr|Q5W9T0|Q5W9T0_CHLRE Lhc-like protein Lhl4 (High intensity lig...    38   0.63 
tr|Q2R123|Q2R123_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    38   0.63 
tr|A2ZGG1|A2ZGG1_ORYSI Putative uncharacterized protein OS=Oryza...    38   0.63 
tr|Q4BUR3|Q4BUR3_CROWT CAB/ELIP/HLIP superfamily OS=Crocosphaera...    37   1.1  
tr|Q6A949|Q6A949_PROAC Transcriptional regulator OS=Propionibact...    37   1.4  
tr|Q3M909|Q3M909_ANAVT CAB/ELIP/HLIP superfamily OS=Anabaena var...    37   1.4  
tr|B1WXE9|B1WXE9_CYAA5 Putative CAB/ELIP/HLIP superfamily protei...    37   1.4  
tr|Q7U690|Q7U690_SYNPX Possible high light inducible protein OS=...    36   1.8  
tr|B0CFS4|B0CFS4_ACAM1 CAB/ELIP/HLIP superfamily protein, putati...    36   1.8  
tr|B0BZB3|B0BZB3_ACAM1 High light inducible protein OS=Acaryochl...    36   1.8  
tr|A8ZP26|A8ZP26_ACAM1 CAB/ELIP/HLIP superfamily protein, putati...    36   1.8  
tr|A0YTZ2|A0YTZ2_9CYAN CAB/ELIP/HLIP superfamily of protein OS=L...    36   1.8  

>tr|A9NK68|A9NK68_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 153

 Score = 68.2 bits (165), Expect = 4e-10
 Identities = 38/82 (46%), Positives = 47/82 (57%)
 Frame = +2

Query: 338 QGHLVGVARCEVSEEKSNSLDIWLGRAAMLGFVSVVSVEVATGKGVLENXXXXXXXXXXX 517
           +G LVGV RCE S E +NSLDIWLGR AML FV+ +++E+ TGKGVL+N           
Sbjct: 73  RGVLVGV-RCEQSTEGNNSLDIWLGRFAMLSFVAAITIEITTGKGVLQNIGLTAPLPTVS 131

Query: 518 XXXXXXXXXXXXFGIFRSANTD 583
                       F IFRS + D
Sbjct: 132 LGLVTAVGVVVAFKIFRSGSED 153


>tr|A5B423|A5B423_VITVI Putative uncharacterized protein (Chromosome
           chr3 scaffold_8, whole genome shotgun sequence) OS=Vitis
           vinifera GN=GSVIVT00036647001 PE=4 SV=1
          Length = 148

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 27/41 (65%), Positives = 33/41 (80%)
 Frame = +2

Query: 362 RCEVSEEKSNSLDIWLGRAAMLGFVSVVSVEVATGKGVLEN 484
           RCE S  + NSLD+WLGR AM+GF   +SVE+ATGKG+LEN
Sbjct: 75  RCEQSANEGNSLDVWLGRLAMVGFAVAISVEIATGKGLLEN 115


>tr|B6SRW4|B6SRW4_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 127

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 26/45 (57%), Positives = 33/45 (73%)
 Frame = +2

Query: 350 VGVARCEVSEEKSNSLDIWLGRAAMLGFVSVVSVEVATGKGVLEN 484
           + + RCE S +K    D WLGRAAM+GF S ++VEVATGKG L+N
Sbjct: 48  LSIIRCEQSAKKGGGPDTWLGRAAMVGFASAIAVEVATGKGFLQN 92


>tr|B6SQP2|B6SQP2_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 127

 Score = 57.0 bits (136), Expect = 1e-06
 Identities = 25/45 (55%), Positives = 33/45 (73%)
 Frame = +2

Query: 350 VGVARCEVSEEKSNSLDIWLGRAAMLGFVSVVSVEVATGKGVLEN 484
           + + RCE S +K    D WLGRAAM+GF S ++VEVATGKG L++
Sbjct: 46  LSIIRCEQSAKKGGGPDTWLGRAAMVGFASAIAVEVATGKGFLQS 90


>tr|A8IXP9|A8IXP9_BRACM Stress enhanced protein 1 OS=Brassica
           campestris PE=2 SV=1
          Length = 146

 Score = 56.6 bits (135), Expect = 1e-06
 Identities = 26/41 (63%), Positives = 31/41 (75%)
 Frame = +2

Query: 362 RCEVSEEKSNSLDIWLGRAAMLGFVSVVSVEVATGKGVLEN 484
           R E S E  + LDIWLGR AM+GF   +SVE+ATGKG+LEN
Sbjct: 73  RSEQSTEGGSGLDIWLGRGAMVGFAVAISVEIATGKGLLEN 113


>tr|Q9M7I9|Q9M7I9_ARATH Stress enhanced protein 1
           (At4g34190/F28A23_50) (Putative uncharacterized protein)
           OS=Arabidopsis thaliana GN=SEP1 PE=2 SV=1
          Length = 146

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 25/41 (60%), Positives = 32/41 (78%)
 Frame = +2

Query: 362 RCEVSEEKSNSLDIWLGRAAMLGFVSVVSVEVATGKGVLEN 484
           R E S E S+ LDIWLGR AM+GF   ++VE++TGKG+LEN
Sbjct: 73  RSEQSTEGSSGLDIWLGRGAMVGFAVAITVEISTGKGLLEN 113


>tr|O49486|O49486_ARATH Putative uncharacterized protein AT4g34190
           OS=Arabidopsis thaliana GN=AT4g34190 PE=2 SV=1
          Length = 134

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 25/41 (60%), Positives = 32/41 (78%)
 Frame = +2

Query: 362 RCEVSEEKSNSLDIWLGRAAMLGFVSVVSVEVATGKGVLEN 484
           R E S E S+ LDIWLGR AM+GF   ++VE++TGKG+LEN
Sbjct: 61  RSEQSTEGSSGLDIWLGRGAMVGFAVAITVEISTGKGLLEN 101


>tr|A9PFE3|A9PFE3_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 145

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 22/41 (53%), Positives = 32/41 (78%)
 Frame = +2

Query: 362 RCEVSEEKSNSLDIWLGRAAMLGFVSVVSVEVATGKGVLEN 484
           RCE + +  +S+D+W+GR AM+ F   +SVE+ATGKG+LEN
Sbjct: 72  RCEQNTQDGSSVDVWIGRLAMVAFAGAISVEIATGKGLLEN 112


>tr|B6U7S0|B6U7S0_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 118

 Score = 54.7 bits (130), Expect = 5e-06
 Identities = 24/41 (58%), Positives = 29/41 (70%)
 Frame = +2

Query: 362 RCEVSEEKSNSLDIWLGRAAMLGFVSVVSVEVATGKGVLEN 484
           RCE   +    LD+WL R AMLGFV  V+VE+ TGKGVL+N
Sbjct: 45  RCEQGAKGGGGLDVWLSRGAMLGFVGAVAVELTTGKGVLQN 85


>tr|A9TLE2|A9TLE2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=p1 PE=4 SV=1
          Length = 157

 Score = 52.8 bits (125), Expect = 2e-05
 Identities = 24/43 (55%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
 Frame = +2

Query: 362 RCEVSEEKSN--SLDIWLGRAAMLGFVSVVSVEVATGKGVLEN 484
           RC+ S E  N  SLD W+GR AMLGFV+ + +E+++GKGVLE+
Sbjct: 82  RCDQSTEGGNRRSLDTWIGRFAMLGFVAAIGIEISSGKGVLES 124