DK950090
Clone id TST38A01NGRL0007_L19
Library
Length 679
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0007_L19. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence
ATGCAAAGCTTGAAGGAAGAGCCCATACAAGCCGAGGTTGCATTCTCTGGTCCTGCTTCT
ACCTTTTTCCGGTGGAAGACAGCCATGAAGGGTGCTATATCGATGAAGATGGGTGCATGT
GTAGTGGAGATCAATGAAGAGAAGGAATCTGTTTCGTTGAAGGTGTCGACGGGCGCCATG
AATCACACATGTGATGAGTATACGGACCTTGTGGAGGGAACAATGCTGGAGGTCAAAAAG
ACTAAGAGCCCTATCACTCCTAGATCGGTCTTGGAAGAGAGCCTCCTAGAAGTGCTTGAT
CATAGCCATGATGGGGAGAGCCATGACCTCAGTAAGGGCAGCAGCAGTGGATTTGCGGCA
CAAGAGGAAGAAATTCATCACAGCAAGTCTTCTTCCAAGACTCACATCTCATCAGATGTA
GAGCCCCTCCGTCCTCCAGGGTCCCTGCAAGTCTCCTCTTGCAATGCTTTAGCCAAGAGA
GAGTTCGTGACATATTATAGTCATGAGATTGCTGGCCAAGGTAACTCTTCCACTTATAAA
GGTGCGTATTCACAGCCCTTGGTATCTCGTGACATGAGAGAAAACCCCTTCTTGACTCAG
AGTGAAGGCTCCTCTTACTATGAGGAGCTTGAATTTTCATCGTCACTTTATGATGAGGAT
GAGGGTGAGGATGAGGACG
■■Homology search results ■■ -
sp_hit_id P26539
Definition sp|P26539|VL2_HPV51 Minor capsid protein L2 OS=Human papillomavirus type 51
Align length 35
Score (bit) 30.4
E-value 8.6
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950090|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0007_L19, 5'
(661 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P26539|VL2_HPV51 Minor capsid protein L2 OS=Human papillomavi... 30 8.6
sp|Q891Q9|Y2309_CLOTE UPF0597 protein CTC_02309 OS=Clostridium t... 30 8.7

>sp|P26539|VL2_HPV51 Minor capsid protein L2 OS=Human papillomavirus
type 51 GN=L2 PE=3 SV=1
Length = 468

Score = 30.4 bits (67), Expect = 8.6
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -3

Query: 158 APVDTFNETDSFSSLISTTHAPIFIDIAPFMAVFH 54
+P+ TF TD F S+T P +DI P H
Sbjct: 118 SPIPTFTGTDGFEITSSSTTTPAVLDITPSAGTVH 152


>sp|Q891Q9|Y2309_CLOTE UPF0597 protein CTC_02309 OS=Clostridium
tetani GN=CTC_02309 PE=3 SV=2
Length = 423

Score = 30.4 bits (67), Expect = 8.7
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1

Query: 88 KMGACVVEINEEKESVSLKVSTGAMNHTCDEYTDLVEGTMLE 213
K G C+ E +EEK SVS+ + N T + D V+ +E
Sbjct: 150 KNGMCIEEKSEEKSSVSVNLRDEIRNFTIKDLKDFVDNIDIE 191


tr_hit_id A7IQD1
Definition tr|A7IQD1|A7IQD1_XANP2 Globin OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2)
Align length 64
Score (bit) 33.9
E-value 9.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950090|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0007_L19, 5'
(661 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7IQD1|A7IQD1_XANP2 Globin OS=Xanthobacter autotrophicus (str... 34 9.2

>tr|A7IQD1|A7IQD1_XANP2 Globin OS=Xanthobacter autotrophicus (strain
ATCC BAA-1158 / Py2) GN=Xaut_5029 PE=4 SV=1
Length = 165

Score = 33.9 bits (76), Expect = 9.2
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = -1

Query: 526 HLYKWKSYLGQQSHDYNMSRTLSWLKHCKRRLAGTLEDGGA----LHLMRCESWKKTCCD 359
H +W + + +HD + C RR+A +LE G A +HLM+ E +++ D
Sbjct: 91 HFDRWLTLFEETAHDVCPPTAAAHFIECARRVAQSLELGIAGQHGIHLMKGERFRRPDHD 150

Query: 358 EFLP 347
FLP
Sbjct: 151 VFLP 154