NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950087
Clone id TST38A01NGRL0007_L16
Library
Length 709
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0007_L16. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
GCCAGTGAGGAGACTATTCAGTGGGACGGTGGCTGGAGCGGTCCAAGAAAGCCATGGCAG
GCAGATAGCTTCGCCAGCGACAGGCAGGGAGGTTGTCTTCTTCCCTCCGAAGTCAGGTGC
ATTGCGCTATAGAGCAGCTCCAGCCCCGTACCGGTAACTGAAAGTAGGTGATGACGAACT
ACCCGAAAAAAATCAATGGGAAAAAAAGTAAGCAGGTTTATAGGCCTGTAGAAACTTCAG
CCCATGGCAATACTGGTGATGTTTCAGGATCTGCGAAGCACAATAGATGTACTGAAATTG
AATTTGTGGATCCAGAAGAGGAAATTGTTTGGCACGGAAATAGTGGCCTTCAAGCTACAT
GTGTGGCATCGAATAAAAATCCATTAATTTTTGAGGAAGCACAGAATGTGGCTAGTTTAT
CAACCAACCATAATGAGGTAAACTGGGTGCCCTCGACTGCTCAACATCCAAATGAAGCAC
CTCGTCAATATGCAGTACTGAGGAATTTGCTAGAGAATAGATCTAATAAACCAAGGAAAC
CTGGTGATTGCTCTGGTAATATTTCAAATCTTGATGCCTCCAAAGAGAGCAAAAAGTATA
GCACAAAAAAAAAGCATACCAGCAGACAAAGGGATCATATTGGTGGATTAGAGGATGGGT
ACAAATTTGTGGTAAAAACTTCAGTACCAACTGAAAAACTGAATGAAGT
■■Homology search results ■■ -
sp_hit_id B0C6R3
Definition sp|B0C6R3|PURL_ACAM1 Phosphoribosylformylglycinamidine synthase 2 OS=Acaryochloris marina (strain MBIC 11017)
Align length 37
Score (bit) 31.2
E-value 5.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950087|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0007_L16, 5'
         (709 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|B0C6R3|PURL_ACAM1 Phosphoribosylformylglycinamidine synthase ...    31   5.8  
sp|P39083|RGA1_YEAST Rho-type GTPase-activating protein 1 OS=Sac...    31   7.5  
sp|Q86YC3|LRC33_HUMAN Leucine-rich repeat-containing protein 33 ...    30   9.8  

>sp|B0C6R3|PURL_ACAM1 Phosphoribosylformylglycinamidine synthase 2
           OS=Acaryochloris marina (strain MBIC 11017) GN=purL PE=3
           SV=1
          Length = 783

 Score = 31.2 bits (69), Expect = 5.8
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = +2

Query: 8   RRLFSGTVAGAVQESHGRQIASPATGREVVFFPPKSG 118
           RRLFSG VAG     +G  +  P  G EV F P  +G
Sbjct: 144 RRLFSGVVAGIAH--YGNCVGVPTVGGEVYFDPAYTG 178


>sp|P39083|RGA1_YEAST Rho-type GTPase-activating protein 1
           OS=Saccharomyces cerevisiae GN=RGA1 PE=1 SV=1
          Length = 1007

 Score = 30.8 bits (68), Expect = 7.5
 Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 9/121 (7%)
 Frame = +3

Query: 237 SAHGNTGDVSGSAKHNRCTEIEFVDPEEEIVWHGNSGLQATCVASNKNPLIFEEAQNVAS 416
           + + ++ D SGS+K      I+ + PEE    H N  ++    A + N  +        S
Sbjct: 204 TGYNDSDDNSGSSKFGSNVSIDVIGPEENSTEHVNDDVKEEAEAPSANMSLNVATDPTLS 263

Query: 417 L----STNHNEVNWVP---STAQHPNEAPRQY--AVLRNLLENRSNKPRKPGDCSGNISN 569
                S + N +N  P   S+ Q+  ++P  Y   ++ N     S++   P + S N S 
Sbjct: 264 CKEPPSHSRNLLNKTPLRNSSGQYLAKSPSSYRQGIIVNDSLEESDQIDPPNNSSRNASE 323

Query: 570 L 572
           L
Sbjct: 324 L 324


>sp|Q86YC3|LRC33_HUMAN Leucine-rich repeat-containing protein 33
           OS=Homo sapiens GN=LRRC33 PE=2 SV=1
          Length = 692

 Score = 30.4 bits (67), Expect = 9.8
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +3

Query: 381 PLIFEEAQNVASLSTNHNEVNWVPSTAQHPNEAPRQYAVLRNLLENRS 524
           P +F  A+N+ +L  +HN+++  P  A      P      RN+   RS
Sbjct: 419 PGLFANARNITTLDMSHNQISLCPLPAASDRVGPPSCVDFRNMASLRS 466
tr_hit_id Q1JWI8
Definition tr|Q1JWI8|Q1JWI8_DESAC PHP-like OS=Desulfuromonas acetoxidans DSM 684
Align length 51
Score (bit) 37.7
E-value 0.73
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950087|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0007_L16, 5'
         (709 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1JWI8|Q1JWI8_DESAC PHP-like OS=Desulfuromonas acetoxidans DS...    38   0.73 
tr|A9GIF5|A9GIF5_9RHOB Phosphonate monoester hydrolase, putative...    37   0.96 
tr|A9EU58|A9EU58_9RHOB Phosphonate monoester hydrolase, putative...    37   1.2  
tr|Q1LYS9|Q1LYS9_DANRE Novel protein (Fragment) OS=Danio rerio G...    36   2.8  
tr|Q1LVQ6|Q1LVQ6_DANRE Novel protein (Fragment) OS=Danio rerio G...    36   2.8  
tr|Q4Q499|Q4Q499_LEIMA Putative uncharacterized protein OS=Leish...    36   2.8  
tr|A9US98|A9US98_MONBE Predicted protein OS=Monosiga brevicollis...    35   3.6  
tr|A0EHS3|A0EHS3_PARTE Chromosome undetermined scaffold_97, whol...    35   4.7  
tr|B6L9H4|B6L9H4_BRAFL Putative uncharacterized protein OS=Branc...    35   6.2  
tr|A4R1L2|A4R1L2_MAGGR Putative uncharacterized protein OS=Magna...    35   6.2  

>tr|Q1JWI8|Q1JWI8_DESAC PHP-like OS=Desulfuromonas acetoxidans DSM
           684 GN=Dace_0409 PE=4 SV=1
          Length = 243

 Score = 37.7 bits (86), Expect = 0.73
 Identities = 23/51 (45%), Positives = 29/51 (56%)
 Frame = -3

Query: 203 FPIDFFRVVRHHLLSVTGTGLELLYSAMHLTSEGRRQPPCLSLAKLSACHG 51
           FPID+  VVR  +   TGT LE+  S+   T  G   P CL +A+L A HG
Sbjct: 142 FPIDYEAVVRQSV--ATGTALEINSSSFRRTRRGSA-PNCLEIARLCAEHG 189


>tr|A9GIF5|A9GIF5_9RHOB Phosphonate monoester hydrolase, putative
           OS=Phaeobacter gallaeciensis BS107 GN=RGBS107_04401 PE=4
           SV=1
          Length = 525

 Score = 37.4 bits (85), Expect = 0.96
 Identities = 20/93 (21%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
 Frame = +3

Query: 255 GDVSGSAKHNRCTEIEFVDPEEEIVWHGNSGLQATC----VASNKNPLIFEEAQNVASLS 422
           G+  G+ +    +E++F +PE   +W  + G  A+C    +  +    + E A ++  L 
Sbjct: 398 GNTPGNWRSYSYSELDFAEPERPNIWQQHLGTDASCSCLAILRDARFTLVEFAADLPPLL 457

Query: 423 TNHNEVNWVPSTAQHPNEAPRQYAVLRNLLENR 521
            +H+++    + A+HP+       + R +L +R
Sbjct: 458 FDHDDLGEAVNVAEHPDYQGDLARLTRQMLRHR 490


>tr|A9EU58|A9EU58_9RHOB Phosphonate monoester hydrolase, putative
           OS=Phaeobacter gallaeciensis 2.10 GN=RG210_05612 PE=4
           SV=1
          Length = 525

 Score = 37.0 bits (84), Expect = 1.2
 Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
 Frame = +3

Query: 246 GNTGDVSGSAKHNRCTEIEFVDPEEEIVWHGNSGLQATC----VASNKNPLIFEEAQNVA 413
           GNT D   + ++   +E++F +PE   +W  + G  A+C    +  +    + E A ++ 
Sbjct: 398 GNTPD---NWRNYSYSELDFAEPERPNIWQQHLGTDASCSCLAILRDARFTLVEFAADLP 454

Query: 414 SLSTNHNEVNWVPSTAQHPNEAPRQYAVLRNLLENR 521
            L  +H+++    + A+HP+       + R +L +R
Sbjct: 455 PLLFDHDDLGEAVNVAEHPDNQGDLARLTRQMLRHR 490


>tr|Q1LYS9|Q1LYS9_DANRE Novel protein (Fragment) OS=Danio rerio
           GN=DKEY-66C4.2-001 PE=4 SV=1
          Length = 810

 Score = 35.8 bits (81), Expect = 2.8
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
 Frame = +3

Query: 282 NRCTEIEFVDPEEEIVWH----GNSGLQATCVASNK--NPLIFEEAQNVASLSTNHNEVN 443
           N+C++I ++D +E  + H    G S LQ   +  N+  N    +EAQN+ +L  +HN ++
Sbjct: 347 NQCSQIRYIDVQENSITHVDCEGLSNLQILLLGRNQLMNIHGLDEAQNLQTLQLSHNNIS 406

Query: 444 WV 449
            +
Sbjct: 407 LI 408


>tr|Q1LVQ6|Q1LVQ6_DANRE Novel protein (Fragment) OS=Danio rerio
           GN=si:ch211-154h20.2 PE=4 SV=2
          Length = 1290

 Score = 35.8 bits (81), Expect = 2.8
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
 Frame = +3

Query: 282 NRCTEIEFVDPEEEIVWH----GNSGLQATCVASNK--NPLIFEEAQNVASLSTNHNEVN 443
           N+C++I ++D +E  + H    G S LQ   +  N+  N    +EAQN+ +L  +HN ++
Sbjct: 705 NQCSQIRYIDVQENSITHVDCEGLSSLQILLLGRNQLMNIHGLDEAQNLQTLQLSHNNIS 764

Query: 444 WV 449
            +
Sbjct: 765 LI 766


>tr|Q4Q499|Q4Q499_LEIMA Putative uncharacterized protein
           OS=Leishmania major GN=LmjF33.0930 PE=4 SV=1
          Length = 1072

 Score = 35.8 bits (81), Expect = 2.8
 Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -3

Query: 200 PID-FFRVVRHHLLSVTGTGLELLYSAMHLTSEGRRQP 90
           P+D F    RH LL V G+ LE L S+ H T+E RR+P
Sbjct: 685 PLDVFLHDARHSLLMVAGSSLERLLSSSHETTEVRRRP 722


>tr|A9US98|A9US98_MONBE Predicted protein OS=Monosiga brevicollis
            GN=31193 PE=4 SV=1
          Length = 1143

 Score = 35.4 bits (80), Expect = 3.6
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = +3

Query: 312  PEEEIVWHGNSGLQA--TCVASNKNPLIFEEAQNVASLSTNHNEVNWVPSTAQHPNEAPR 485
            P+ E+ WH      A  T   +   P IFEE    A  S  HN + W P  A+   +   
Sbjct: 981  PDPEVYWHSFYDFTANTTAFVATDEPKIFEERGRSAISSFRHNRIVWNPEGAELAQQQGT 1040

Query: 486  QYA 494
            +Y+
Sbjct: 1041 RYS 1043


>tr|A0EHS3|A0EHS3_PARTE Chromosome undetermined scaffold_97, whole
            genome shotgun sequence OS=Paramecium tetraurelia
            GN=GSPATT00027190001 PE=4 SV=1
          Length = 2950

 Score = 35.0 bits (79), Expect = 4.7
 Identities = 29/136 (21%), Positives = 54/136 (39%), Gaps = 5/136 (3%)
 Frame = +3

Query: 126  AIEQLQPRTGN*K*VMTNYPKKINGKKSKQVYRPVETSAHGNTGDVSGSAKHNRCTEIEF 305
            ++EQ Q ++     +  NY + I  +K   + +P++ S+     D + S   N  ++ +F
Sbjct: 608  SLEQQQMKSQKKPIIQQNYKESIQKQKDDDIEKPIDESSQNQANDNTISKIPNTDSQQQF 667

Query: 306  VDPEEEIVWHGN-----SGLQATCVASNKNPLIFEEAQNVASLSTNHNEVNWVPSTAQHP 470
             D   + +   N     S  + T   S K P   E  QN  +        N   + +   
Sbjct: 668  KDKNNKQIQIANLDNKQSQKEQTQSISQKEPQKIENPQNQQNNQQKQKVNNLQQNKSSDQ 727

Query: 471  NEAPRQYAVLRNLLEN 518
            N    +  +L+N  EN
Sbjct: 728  NNLENKKDLLQNQQEN 743


>tr|B6L9H4|B6L9H4_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_67797 PE=4 SV=1
          Length = 874

 Score = 34.7 bits (78), Expect = 6.2
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 11/75 (14%)
 Frame = +3

Query: 285 RCTEIEFVDPEEEIVWHGNSG-LQATCVASN----KNPL------IFEEAQNVASLSTNH 431
           R  +++++D     +W+   G LQ T    N    KN L      +F E  N+ SLS  +
Sbjct: 237 RGLQLDWLDVSANSIWYIAPGVLQGTRSVRNVYIVKNKLQSVSVDMFAELANMQSLSLQY 296

Query: 432 NEVNWVPSTAQHPNE 476
           NE++W+   A H N+
Sbjct: 297 NEISWIADGAFHSNK 311


>tr|A4R1L2|A4R1L2_MAGGR Putative uncharacterized protein
            OS=Magnaporthe grisea GN=MGG_06896 PE=4 SV=1
          Length = 1472

 Score = 34.7 bits (78), Expect = 6.2
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
 Frame = +3

Query: 282  NRCTEIEFVDPEEEIVWHGNS--GLQATCVASNKNPLIFEEAQNVASLSTNHNEVNWVPS 455
            ++  E EF    E   W+G+   GL  T      N  + EE +N   +S +    +W+PS
Sbjct: 967  DKLVEGEFDLEAELRKWNGDGVGGLPDTSADRTVNEGLDEEMRNAHRISASTLRSHWLPS 1026

Query: 456  TAQHPNEAPRQYAVLRNLLENRSNKP 533
            T   P   P+ Y  +  L  + +N P
Sbjct: 1027 TVYEPPPPPQPYLNVGYLSSDFNNHP 1052