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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950086
Clone id TST38A01NGRL0007_L15
Library
Length 534
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0007_L15. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
ACTGTACTATCGAAAGACTCGGCTAATCAATCAACTAGCTTTGTCGCAAAATGTACATGC
GGCATCTTTGCTGTACAAATGCTTTGGCTTAAGATCAGATGCAGAAGCAATCAGCTCATT
TTCAGCTAATCGTTGCAATGCTGATTTGGATGAAAGTCTTGGTACTACAGGTAGATGCAC
TGATAAAGCCATTGAAAGACAGCATGGTGAGGCGTTAAGAATATTTCCTCGAGCTTTTCT
GAAAGGCTATCTGTTTTATGAATATGAACTTTGGCGCCAATTGTATCCTGAAGTGGCGGT
GGGGCAACAGGTATTGAACAGCAAAGCTGTAAATAGGGATTGTGACCTTAGATATGCAGC
TAGAGTGAGTCCCAAGCATTGGATGGGGTGGTGGACTCGTGCATGTAACTTCACCAATTT
TGTGAGGCTGCCTGTTCAAGAACACAGTAGATGGTACATAGTGCCGAAGTTGGAATTGCT
TTCTCCAGTGGTGATAGACGGAGAGGATGAGATACGTAACCAACGGGTGCTTAG
■■Homology search results ■■ -
sp_hit_id P21684
Definition sp|P21684|CRTE_PANAN Geranylgeranyl pyrophosphate synthetase OS=Pantoea ananas
Align length 100
Score (bit) 32.7
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950086|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0007_L15, 5'
         (534 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P21684|CRTE_PANAN Geranylgeranyl pyrophosphate synthetase OS=...    33   1.1  
sp|Q2S1W0|DCUP_SALRD Uroporphyrinogen decarboxylase OS=Salinibac...    32   1.5  
sp|Q10294|PAC2_SCHPO cAMP-independent regulatory protein pac2 OS...    32   1.9  
sp|Q10YG4|MUTS_TRIEI DNA mismatch repair protein mutS OS=Trichod...    32   2.5  
sp|P83757|CACT_DROYA NF-kappa-B inhibitor cactus OS=Drosophila y...    31   4.3  
sp|Q7N8U7|RPPH_PHOLL RNA pyrophosphohydrolase OS=Photorhabdus lu...    30   9.5  
sp|P71481|PRIM_LEGPN DNA primase OS=Legionella pneumophila GN=dn...    30   9.5  
sp|Q99LJ8|NGBR_MOUSE Nogo-B receptor OS=Mus musculus GN=Nus1 PE=...    30   9.7  

>sp|P21684|CRTE_PANAN Geranylgeranyl pyrophosphate synthetase
           OS=Pantoea ananas GN=crtE PE=3 SV=1
          Length = 302

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 22/100 (22%), Positives = 46/100 (46%)
 Frame = +2

Query: 59  AASLLYKCFGLRSDAEAISSFSANRCNADLDESLGTTGRCTDKAIERQHGEALRIFPRAF 238
           A +LL K FG+ +DA+ ++  + NR  ++L  ++G  G    +  +   G+     PR+ 
Sbjct: 124 AVALLSKAFGVIADADGLTPLAKNRAVSELSNAIGMQGLVQGQFKDLSEGDK----PRSA 179

Query: 239 LKGYLFYEYELWRQLYPEVAVGQQVLNSKAVNRDCDLRYA 358
               +   ++        + +   V N+ +  RDC  R++
Sbjct: 180 EAILMTNHFKTSTLFCASMQMASIVANASSEARDCLHRFS 219


>sp|Q2S1W0|DCUP_SALRD Uroporphyrinogen decarboxylase OS=Salinibacter
           ruber (strain DSM 13855) GN=hemE PE=3 SV=1
          Length = 354

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = -1

Query: 240 RKARGNILNASPCCLSMALSVHLPVVPRLSSKSALQRLAENELIASASDLKPKHLYSKDA 61
           R ARG   + +P  +      +LP    +  + +   + E   +A+   ++P   +S DA
Sbjct: 14  RTARGEPTDCTPVWMMRQAGRYLPEYQAIRKEHSFFEVVETPELAAEVTIQPVERFSLDA 73

Query: 60  ACTFCD 43
           A  FCD
Sbjct: 74  AILFCD 79


>sp|Q10294|PAC2_SCHPO cAMP-independent regulatory protein pac2
           OS=Schizosaccharomyces pombe GN=pac2 PE=2 SV=1
          Length = 235

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
 Frame = -3

Query: 490 HWRKQFQLRHYVPSTVFLNRQPHKIGEVTCTSPPPHPMLGTHSSCI--SKVTIP--IYSF 323
           H++    ++     T  LN   HK+  ++ +SP P P L T SS +  S++TIP  +Y  
Sbjct: 139 HYKPNGLIKQSFSITTSLN---HKLHLISYSSPIPDPSLVTPSSDVNLSRITIPYGLYPD 195

Query: 322 AVQYLLPHRHFRIQLAPKFIFIKQIAFQKSSR 227
           A   L+    F   LAP  I ++++A  + +R
Sbjct: 196 AGPPLVQAPKF---LAPYDILVEKVACSEDAR 224


>sp|Q10YG4|MUTS_TRIEI DNA mismatch repair protein mutS
           OS=Trichodesmium erythraeum (strain IMS101) GN=mutS PE=3
           SV=1
          Length = 901

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = -2

Query: 347 GHNPYLQLCCSIPVAPPPLQDTIGAKVHIHKTDSLSEKLEE 225
           G++PYL++   IP    P+   +G K+H +  +S S+KL+E
Sbjct: 435 GNSPYLKVLQKIP----PILQELGKKIHSNLVESPSQKLKE 471


>sp|P83757|CACT_DROYA NF-kappa-B inhibitor cactus OS=Drosophila
           yakuba GN=cact PE=4 SV=1
          Length = 489

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = +2

Query: 74  YKCFGLRSDAEAISSFSANRCNADLDESLGTTGRCTDKAIERQHGEALRI 223
           ++ +G RS+ +A+SS S  R  ADL+       RC   A E  H + LRI
Sbjct: 320 HRQYGHRSNDKAVSSLSFARLPADLEIRNYDGERCVHLAAEAGHIDILRI 369


>sp|Q7N8U7|RPPH_PHOLL RNA pyrophosphohydrolase OS=Photorhabdus
           luminescens subsp. laumondii GN=rppH PE=3 SV=1
          Length = 176

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 24/92 (26%), Positives = 44/92 (47%)
 Frame = +2

Query: 197 RQHGEALRIFPRAFLKGYLFYEYELWRQLYPEVAVGQQVLNSKAVNRDCDLRYAARVSPK 376
           R++G+    FP+  +      E  ++R+LY EV +G++ +   A  R+  LRY     PK
Sbjct: 26  RRYGQHSWQFPQGGINPGESPEQAMYRELYEEVGLGRKDVRILASTRNW-LRYKL---PK 81

Query: 377 HWMGWWTRACNFTNFVRLPVQEHSRWYIVPKL 472
             + W TR         + + +  RW+++  L
Sbjct: 82  RLVRWDTRP--------VCIGQKQRWFLLQLL 105


>sp|P71481|PRIM_LEGPN DNA primase OS=Legionella pneumophila GN=dnaG
           PE=3 SV=1
          Length = 576

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 4/122 (3%)
 Frame = +2

Query: 29  NQLALSQNVHAASLLYKCFGLRSDAEAISSFSANRCNADLDESLGTTGR----CTDKAIE 196
           N+   S NV A    Y CFG  +   AI SF  N  N    +++ T  R    C      
Sbjct: 44  NEKTPSFNVVAKKQFYHCFGCGASGNAI-SFVMNYLNQGFTDAVETLRRAWVKCPRDGTG 102

Query: 197 RQHGEALRIFPRAFLKGYLFYEYELWRQLYPEVAVGQQVLNSKAVNRDCDLRYAARVSPK 376
            +H  +L ++    L   +   Y+   +   +VA+    L ++ ++ +   RY    +P+
Sbjct: 103 EKHKSSLNLYN---LMSEVSQYYQKKLKYNGQVAI--DYLRNRGLSGEIAKRYHLGYAPE 157

Query: 377 HW 382
            W
Sbjct: 158 GW 159


>sp|Q99LJ8|NGBR_MOUSE Nogo-B receptor OS=Mus musculus GN=Nus1 PE=2
           SV=1
          Length = 297

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -1

Query: 426 LTKLVKLHARVHHPIQCLGLTLAAYLRSQSLFTALLFNTCCPTATS 289
           +T L +L  RV H + CL LTL ++LR +      ++  CC  A++
Sbjct: 1   MTGLYELVWRVLHALLCLHLTLTSWLRVRFGTWNWIWRRCCRAASA 46
tr_hit_id A9SSK3
Definition tr|A9SSK3|A9SSK3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 218
Score (bit) 95.5
E-value 2.0e-18
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950086|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0007_L15, 5'
         (534 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SSK3|A9SSK3_PHYPA Predicted protein OS=Physcomitrella paten...    96   2e-18
tr|Q13X91|Q13X91_BURXL Putative uncharacterized protein OS=Burkh...    35   3.2  
tr|B2JIF0|B2JIF0_BURP8 Putative uncharacterized protein OS=Burkh...    34   4.1  
tr|B4MS76|B4MS76_DROWI GK15616 OS=Drosophila willistoni GN=GK156...    34   4.1  
tr|B1M034|B1M034_METRJ Filamentation induced by cAMP protein Fic...    34   5.4  

>tr|A9SSK3|A9SSK3_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_234038 PE=4 SV=1
          Length = 895

 Score = 95.5 bits (236), Expect = 2e-18
 Identities = 76/218 (34%), Positives = 100/218 (45%), Gaps = 44/218 (20%)
 Frame = +2

Query: 11   RKTRLINQLALSQNVHAASLLY------------KCFGLRSDAEAISSFSANRCNAD--- 145
            RK RL+NQLALS N  AA +L              C     D E + +  +++ + +   
Sbjct: 577  RKARLVNQLALSANPCAALMLRDLYIDKGPDDSSNCLDELRD-ERLQTVDSDKISKERSI 635

Query: 146  -------------LDESLGTTGRCT------------DKAIERQHG-EALRIFPRAFLKG 247
                         LD S+   G  T            D   E   G + L I P A LKG
Sbjct: 636  EGLTGIPPVSIQMLDLSVVEGGVSTAAERTPQSETMKDSEAENSEGIKNLTIVPSALLKG 695

Query: 248  YLFYEYELWRQLYPEVAVGQQVLNSKAVNRDCDLRYA---ARVSPKHWMGWWTRACNFTN 418
            YLFYEY+LWR  Y E    ++ + S  +  D +       A +S  HW+GWWTR  +   
Sbjct: 696  YLFYEYKLWR--YLETQGLRKTVPSAPLISDMEQNEPPEKASLSTNHWIGWWTR--DIME 751

Query: 419  FVRLPVQEHSRWYIVPKLELLSPVVIDGEDEIRNQRVL 532
            F  LP+ +HS+WYI+PKLE LSPVVI   D  R   VL
Sbjct: 752  FADLPLHKHSKWYIIPKLEWLSPVVIPRSDAARCAHVL 789


>tr|Q13X91|Q13X91_BURXL Putative uncharacterized protein
           OS=Burkholderia xenovorans (strain LB400) GN=Bxeno_A2760
           PE=4 SV=1
          Length = 373

 Score = 34.7 bits (78), Expect = 3.2
 Identities = 23/87 (26%), Positives = 36/87 (41%)
 Frame = +2

Query: 227 PRAFLKGYLFYEYELWRQLYPEVAVGQQVLNSKAVNRDCDLRYAARVSPKHWMGWWTRAC 406
           P+ F+KG+LFY              G+  L              A ++P H  GWW    
Sbjct: 246 PQMFIKGWLFYRR------------GETPLE------------PAELNPAHARGWWVTRS 281

Query: 407 NFTNFVRLPVQEHSRWYIVPKLELLSP 487
           ++  FV    +   +W  +P+LE L+P
Sbjct: 282 DWPAFVAAGTE---KWRTLPRLEWLAP 305


>tr|B2JIF0|B2JIF0_BURP8 Putative uncharacterized protein
           OS=Burkholderia phymatum (strain DSM 17167 / STM815)
           GN=Bphy_1362 PE=4 SV=1
          Length = 338

 Score = 34.3 bits (77), Expect = 4.1
 Identities = 23/83 (27%), Positives = 32/83 (38%)
 Frame = +2

Query: 236 FLKGYLFYEYELWRQLYPEVAVGQQVLNSKAVNRDCDLRYAARVSPKHWMGWWTRACNFT 415
           F+KG+LFY                   N +A       R  A + P H  GWWT    +T
Sbjct: 202 FVKGWLFYR------------------NGRAE------RDPAEIEPAHARGWWTTRAEWT 237

Query: 416 NFVRLPVQEHSRWYIVPKLELLS 484
            F          W ++P+LE L+
Sbjct: 238 EF---SAGHADAWMVLPRLEWLA 257


>tr|B4MS76|B4MS76_DROWI GK15616 OS=Drosophila willistoni GN=GK15616
           PE=4 SV=1
          Length = 1004

 Score = 34.3 bits (77), Expect = 4.1
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
 Frame = -3

Query: 523 LVTYLILSVYHHWRKQFQLRHYVPSTVF----LNRQPHKIGEVTCTSPPPHPMLGTHSSC 356
           L T  +   +HH ++Q Q    VP+++         P   G  T  +PPP P L + S+C
Sbjct: 418 LTTATLPRQHHHQQQQQQNFVAVPTSLLRFSAAPTMPVPTGSATAIAPPPLPPLSSSSNC 477

Query: 355 ISKVTIPIY 329
               T  IY
Sbjct: 478 YGPATATIY 486


>tr|B1M034|B1M034_METRJ Filamentation induced by cAMP protein Fic
           OS=Methylobacterium radiotolerans (strain ATCC 27329 /
           DSM 1819 / JCM 2831) GN=Mrad2831_2527 PE=4 SV=1
          Length = 412

 Score = 33.9 bits (76), Expect = 5.4
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
 Frame = +2

Query: 104 EAISSFSANRCNADLDESLGTTGRCTDKAIE----RQHGEAL-RIFPRAFLKGYLFYEYE 268
           EA+SS S    N+ LDE L       D   E    R + + L R+ P A  +GY  ++ +
Sbjct: 77  EAVSSSSIEGTNSTLDELLAVEDADEDGRSEVRQVRDYAQLLDRVLPDAMERGYGVFDLD 136

Query: 269 LWRQLYPEV 295
           L R+L+ EV
Sbjct: 137 LVRRLHAEV 145