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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950060
Clone id TST38A01NGRL0007_K13
Library
Length 702
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0007_K13. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CCTGACTAGCACTTCGGCGGCTTGGACAGCTGAAGCTTGTCACCTGCAGCAGATATGGCG
CGCCTGTCCGTTGCGCTGCTTCTGCTCTTCGCAATGTGTGCCTTCATTGCTAGCCCTGCC
CTTGCGCGCAGGTCTACTAGGAGGCTCAACAGCGGCTACCCTAAGAAGGGCTCGTCTGAC
TCGTCGCCTTCCACAAGCTCTCCATACCCATCGGGCGGGTCGCCCTCTTCTGGAAGCTCG
CCCTCATCTGGAAGCTCTCCTTCTGGTAGCTCTCCGTCATCATCCACACCATCCATCACT
GTTCCGCCAGTGATCTCATCTCCTTCCCCAGTAACCATTCCCCCGGTGACGTCGACTCCT
TCTGGTGGTTATGGAGGATATGGGTCTCGAAGCGGCATGGGAACGTCAGGGTTCTTTGGA
CGCAACCCTGCCAGGATTCCAAAGATTCTGTCGCTGGTGTCGACGATTGCAAAGCTGTTT
GGCCCTCGGCTACTGAAGTTTTTTGCAGGGAGGAAGCCACCTAGCATTCTGGGAGCTTTG
AAGGATCAGAGCCCTATGCCGCTGTCGTCTTTGGCACGGGAGGCGACGGCGTCACTCATC
AATTCGTATGCGCACAAGGACTTTCCGCTCTCCACATCCCAAGTGGTCTCGCAGTTCAAC
GATGCTCTGGAGACTTCTCAGACCGCAGCCCAGCAGGCCCTC
■■Homology search results ■■ -
sp_hit_id Q2SB47
Definition sp|Q2SB47|HMUV_HAHCH Hemin import ATP-binding protein hmuV OS=Hahella chejuensis (strain KCTC 2396)
Align length 54
Score (bit) 32.7
E-value 2.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950060|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0007_K13, 5'
         (702 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2SB47|HMUV_HAHCH Hemin import ATP-binding protein hmuV OS=Ha...    33   2.0  
sp|Q80W71|PKHA8_MOUSE Pleckstrin homology domain-containing fami...    32   4.3  
sp|Q96JA3|PKHA8_HUMAN Pleckstrin homology domain-containing fami...    32   4.3  
sp|O00151|PDLI1_HUMAN PDZ and LIM domain protein 1 OS=Homo sapie...    31   5.7  
sp|Q5TG08|YV009_HUMAN Putative uncharacterized protein LOC388900...    30   9.6  
sp|P57333|SYP_BUCAI Prolyl-tRNA synthetase OS=Buchnera aphidicol...    30   9.7  
sp|P57634|MTLD_BUCAI Mannitol-1-phosphate 5-dehydrogenase OS=Buc...    30   9.7  

>sp|Q2SB47|HMUV_HAHCH Hemin import ATP-binding protein hmuV
           OS=Hahella chejuensis (strain KCTC 2396) GN=hmuV PE=3
           SV=1
          Length = 256

 Score = 32.7 bits (73), Expect = 2.0
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +1

Query: 490 LLKFFAGRKPPSILGALKDQSPMPLSSLAR-EATASLINSYAHKDFPLSTSQVV 648
           LLK  AG  PPS    L D  P+   SL++     ++++   H DFP S  +VV
Sbjct: 43  LLKTLAGDLPPSHGHVLLDDEPISQFSLSQLSRRRAVLSQSVHLDFPFSAMEVV 96


>sp|Q80W71|PKHA8_MOUSE Pleckstrin homology domain-containing family
           A member 8 OS=Mus musculus GN=Plekha8 PE=2 SV=2
          Length = 519

 Score = 31.6 bits (70), Expect = 4.3
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -3

Query: 439 ESWQGCVQRTLTFPCRFETHILHNHQKESTSPGEWLLGKEMRSLAE-Q*WMV 287
           ++W+GC        C  + H + N + +   PGE     + RS+AE Q W+V
Sbjct: 35  DAWKGCKGSIQMAVCEIQVHSVDNTRMDLIIPGEQYFYLKARSVAERQRWLV 86


>sp|Q96JA3|PKHA8_HUMAN Pleckstrin homology domain-containing family
           A member 8 OS=Homo sapiens GN=PLEKHA8 PE=1 SV=2
          Length = 519

 Score = 31.6 bits (70), Expect = 4.3
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -3

Query: 439 ESWQGCVQRTLTFPCRFETHILHNHQKESTSPGEWLLGKEMRSLAE-Q*WMV 287
           ++W+GC        C  + H + N + +   PGE     + RS+AE Q W+V
Sbjct: 35  DAWKGCKGSIQMAVCEIQVHSVDNTRMDLIIPGEQYFYLKARSVAERQRWLV 86


>sp|O00151|PDLI1_HUMAN PDZ and LIM domain protein 1 OS=Homo sapiens
           GN=PDLIM1 PE=1 SV=4
          Length = 329

 Score = 31.2 bits (69), Expect = 5.7
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
 Frame = +1

Query: 529 LGALKDQSPMPLS-SLAREATASLINSYAHKDFPLSTSQVVSQFNDALETSQTAA 690
           +G+  ++S MP + S A   TA +I +  +    L +S+ +S FN+ALE S+TAA
Sbjct: 116 IGSAHNRSAMPFTASPASSTTARVITNQYNNPAGLYSSENISNFNNALE-SKTAA 169


>sp|Q5TG08|YV009_HUMAN Putative uncharacterized protein LOC388900
           OS=Homo sapiens PE=1 SV=2
          Length = 646

 Score = 30.4 bits (67), Expect = 9.6
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +3

Query: 294 HHCSASDLISFPSNHSPGDV--DSFWWLW 374
           H CS  +L  F S+ SP  +  DSFWW++
Sbjct: 168 HFCSGRELEKFLSSSSPRAIWLDSFWWIF 196


>sp|P57333|SYP_BUCAI Prolyl-tRNA synthetase OS=Buchnera aphidicola
           subsp. Acyrthosiphon pisum GN=proS PE=3 SV=1
          Length = 572

 Score = 30.4 bits (67), Expect = 9.7
 Identities = 23/77 (29%), Positives = 35/77 (45%)
 Frame = +1

Query: 439 PKILSLVSTIAKLFGPRLLKFFAGRKPPSILGALKDQSPMPLSSLAREATASLINSYAHK 618
           P+ L   S    L+G  LL+F   RK   ILG   ++       +      S I+SY  K
Sbjct: 76  PEYLWKESRRLNLYGEELLRFLDRRKNQFILGPTNEE-------VVTNFIGSEIHSY--K 126

Query: 619 DFPLSTSQVVSQFNDAL 669
             PL+  Q+ ++F D +
Sbjct: 127 QLPLTVYQIQTKFRDEI 143


>sp|P57634|MTLD_BUCAI Mannitol-1-phosphate 5-dehydrogenase
           OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
           GN=mtlD PE=3 SV=1
          Length = 385

 Score = 30.4 bits (67), Expect = 9.7
 Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
 Frame = +1

Query: 424 NPARIPKILSLVSTIAKLFGPRLLKFFAGRKPPSILGALKDQSPMPLSSLARE---ATAS 594
           N + I KI+S V  I    GP  L+  A      I+  +K+Q   PL+ +A E    ++S
Sbjct: 70  NDSNIKKIISSVDLITTAVGPTALEKIALIITQGIIFKIKNQFTKPLNIIACENKIKSSS 129

Query: 595 LINSYAHKDFPLSTSQVVSQFNDALETS 678
            +     K+ P+     ++++   ++ S
Sbjct: 130 FLKQVVLKNLPIKYHDYLNKYIGFIDCS 157
tr_hit_id A7Q1T6
Definition tr|A7Q1T6|A7Q1T6_VITVI Chromosome chr7 scaffold_44, whole genome shotgun sequence OS=Vitis vinifera
Align length 98
Score (bit) 48.5
E-value 0.0004
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950060|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0007_K13, 5'
         (702 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7Q1T6|A7Q1T6_VITVI Chromosome chr7 scaffold_44, whole genome...    49   4e-04
tr|Q0JBQ6|Q0JBQ6_ORYSJ Os04g0517000 protein OS=Oryza sativa subs...    43   0.017
tr|Q01J54|Q01J54_ORYSA OSIGBa0145M07.3 protein OS=Oryza sativa G...    43   0.017
tr|A3AVK8|A3AVK8_ORYSJ Putative uncharacterized protein OS=Oryza...    43   0.017
tr|A2XVJ3|A2XVJ3_ORYSI Putative uncharacterized protein OS=Oryza...    43   0.017
tr|Q9S728|Q9S728_ARATH En/Spm-like transposon protein (At2g42840...    42   0.029
tr|B5G4Z8|B5G4Z8_GOSBA PDF OS=Gossypium barbadense PE=2 SV=1           41   0.086
tr|B6T5X0|B6T5X0_MAIZE Meiosis 5 OS=Zea mays PE=2 SV=1                 40   0.15 
tr|Q0JJP4|Q0JJP4_ORYSJ Os01g0726700 protein OS=Oryza sativa subs...    40   0.19 
tr|B8A8Z5|B8A8Z5_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.19 
tr|A2ZXF5|A2ZXF5_ORYSJ Putative uncharacterized protein OS=Oryza...    40   0.19 
tr|Q7F997|Q7F997_ORYSA OSJNBa0073E02.5 protein OS=Oryza sativa G...    39   0.25 
tr|B6T6E4|B6T6E4_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.33 
tr|Q87QC3|Q87QC3_VIBPA Putative uncharacterized protein VP1226 O...    39   0.42 
tr|A6B4Q8|A6B4Q8_VIBPA ABC-type antimicrobial peptide transport ...    39   0.42 
tr|B4FHD3|B4FHD3_MAIZE Putative uncharacterized protein OS=Zea m...    38   0.56 
tr|B6U5L9|B6U5L9_MAIZE DNA-directed RNA polymerase II largest su...    38   0.73 
tr|A9RBG6|A9RBG6_PHYPA Predicted protein OS=Physcomitrella paten...    38   0.73 
tr|A2X2P5|A2X2P5_ORYSI Putative uncharacterized protein OS=Oryza...    37   0.95 
tr|A9PG40|A9PG40_POPTR Putative uncharacterized protein OS=Popul...    37   1.2  
tr|Q6H525|Q6H525_ORYSJ Putative protodermal factor (Putative unc...    36   2.1  
tr|Q8S8D0|Q8S8D0_ARATH Expressed protein (At2g20515) (Putative u...    35   4.7  
tr|Q8LCX1|Q8LCX1_ARATH Putative uncharacterized protein OS=Arabi...    35   4.7  
tr|Q56UU6|Q56UU6_ORYSJ Proline-and threonine-rich protein OS=Ory...    35   6.1  
tr|Q0E2K8|Q0E2K8_ORYSJ Os02g0230300 protein (Fragment) OS=Oryza ...    35   6.1  
tr|A8T1W8|A8T1W8_9VIBR Putative uncharacterized protein OS=Vibri...    34   7.9  
tr|A9SPT3|A9SPT3_PHYPA Predicted protein OS=Physcomitrella paten...    34   8.0  

>tr|A7Q1T6|A7Q1T6_VITVI Chromosome chr7 scaffold_44, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00028591001
           PE=4 SV=1
          Length = 153

 Score = 48.5 bits (114), Expect = 4e-04
 Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
 Frame = +1

Query: 412 FFGRNPARIPKILSLVSTIAKLFGPRLLKFFAGRKPPSILGALKDQSPMP--LSSLAREA 585
           ++G      P+++   ST+AK+FG R  + F  R   ++L A      +      L ++ 
Sbjct: 47  YWGSRKEAWPRMVPQTSTVAKVFGSRASERF--RSDMTLLEATAQDESVENVFHGLLKQT 104

Query: 586 TASLINSYAHKDFPLSTSQVVSQFNDALETSQTAAQQA 699
           +A+LINSYA K FP S  +V +    AL + + AA QA
Sbjct: 105 SAALINSYARKGFPYSAWEVKTLLIQALVSEEAAALQA 142


>tr|Q0JBQ6|Q0JBQ6_ORYSJ Os04g0517000 protein OS=Oryza sativa subsp.
           japonica GN=Os04g0517000 PE=4 SV=1
          Length = 156

 Score = 43.1 bits (100), Expect = 0.017
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
 Frame = +1

Query: 412 FFGRNPARIPKILSLVSTIAKLFGPRLLKFFAGRKPPSILGALKDQ--SPMPLSSLAREA 585
           F+     + P I+   + ++K+FG R +  +  R          D   S    + L ++ 
Sbjct: 48  FWSSGAEQWPNIIPQEAAVSKVFGSRSIDRYGPRLTVLEATTRTDDNGSSSAFAKLVKQG 107

Query: 586 TASLINSYAHKDFPLSTSQVVSQFNDALETSQTAAQQA 699
           +A+L+N+YA K FPL + +V +   +AL +   AA QA
Sbjct: 108 SAALLNAYARKGFPLDSWEVKALLLEALVSEDAAAAQA 145


>tr|Q01J54|Q01J54_ORYSA OSIGBa0145M07.3 protein OS=Oryza sativa
           GN=OSIGBa0145M07.3 PE=4 SV=1
          Length = 179

 Score = 43.1 bits (100), Expect = 0.017
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
 Frame = +1

Query: 412 FFGRNPARIPKILSLVSTIAKLFGPRLLKFFAGRKPPSILGALKDQ--SPMPLSSLAREA 585
           F+     + P I+   + ++K+FG R +  +  R          D   S    + L ++ 
Sbjct: 71  FWSSGAEQWPNIIPQEAAVSKVFGSRSIDRYGPRLTVLEATTRTDDNGSSSAFAKLVKQG 130

Query: 586 TASLINSYAHKDFPLSTSQVVSQFNDALETSQTAAQQA 699
           +A+L+N+YA K FPL + +V +   +AL +   AA QA
Sbjct: 131 SAALLNAYARKGFPLDSWEVKALLLEALVSEDAAAAQA 168


>tr|A3AVK8|A3AVK8_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_014830 PE=4 SV=1
          Length = 179

 Score = 43.1 bits (100), Expect = 0.017
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
 Frame = +1

Query: 412 FFGRNPARIPKILSLVSTIAKLFGPRLLKFFAGRKPPSILGALKDQ--SPMPLSSLAREA 585
           F+     + P I+   + ++K+FG R +  +  R          D   S    + L ++ 
Sbjct: 71  FWSSGAEQWPNIIPQEAAVSKVFGSRSIDRYGPRLTVLEATTRTDDNGSSSAFAKLVKQG 130

Query: 586 TASLINSYAHKDFPLSTSQVVSQFNDALETSQTAAQQA 699
           +A+L+N+YA K FPL + +V +   +AL +   AA QA
Sbjct: 131 SAALLNAYARKGFPLDSWEVKALLLEALVSEDAAAAQA 168


>tr|A2XVJ3|A2XVJ3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_16649 PE=4 SV=1
          Length = 179

 Score = 43.1 bits (100), Expect = 0.017
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
 Frame = +1

Query: 412 FFGRNPARIPKILSLVSTIAKLFGPRLLKFFAGRKPPSILGALKDQ--SPMPLSSLAREA 585
           F+     + P I+   + ++K+FG R +  +  R          D   S    + L ++ 
Sbjct: 71  FWSSGAEQWPNIIPQEAAVSKVFGSRSIDRYGPRLTVLEATTRTDDNGSSSAFAKLVKQG 130

Query: 586 TASLINSYAHKDFPLSTSQVVSQFNDALETSQTAAQQA 699
           +A+L+N+YA K FPL + +V +   +AL +   AA QA
Sbjct: 131 SAALLNAYARKGFPLDSWEVKALLLEALVSEDAAAAQA 168


>tr|Q9S728|Q9S728_ARATH En/Spm-like transposon protein (At2g42840)
           (Protodermal factor 1) OS=Arabidopsis thaliana GN=PDF1
           PE=2 SV=1
          Length = 306

 Score = 42.4 bits (98), Expect = 0.029
 Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
 Frame = +1

Query: 412 FFGRNPARIPKILSLVSTIAKLFGP-RLLKFFAGRKPP-SILGALKDQSPMPLSSLAREA 585
           ++  +P  I  +L    T+   FG   +     G  P  ++L AL +    P+ +L RE 
Sbjct: 194 YWRNHPTLIWGLLGWWGTVGGAFGTVSIPSSIPGFDPHMNLLQALSNTRSDPIGALYREG 253

Query: 586 TASLINSYAHKDFPLSTSQVVSQFNDALETSQTAAQQA 699
           TAS +NS  +  FP +T QV   F   L +++ A +QA
Sbjct: 254 TASWLNSMVNHKFPFTTPQVRDHFVAGLSSNKAATKQA 291


>tr|B5G4Z8|B5G4Z8_GOSBA PDF OS=Gossypium barbadense PE=2 SV=1
          Length = 294

 Score = 40.8 bits (94), Expect = 0.086
 Identities = 25/59 (42%), Positives = 32/59 (54%)
 Frame = +1

Query: 523 SILGALKDQSPMPLSSLAREATASLINSYAHKDFPLSTSQVVSQFNDALETSQTAAQQA 699
           S+  AL +     L +L RE TAS +NS  +  FP ST QV   F  AL ++  AA QA
Sbjct: 221 SLPQALSNTRTDGLGALYREGTASFLNSMVNNRFPFSTKQVRETFVAALGSNSAAAAQA 279


>tr|B6T5X0|B6T5X0_MAIZE Meiosis 5 OS=Zea mays PE=2 SV=1
          Length = 201

 Score = 40.0 bits (92), Expect = 0.15
 Identities = 25/96 (26%), Positives = 46/96 (47%)
 Frame = +1

Query: 412 FFGRNPARIPKILSLVSTIAKLFGPRLLKFFAGRKPPSILGALKDQSPMPLSSLAREATA 591
           ++  +P  I  ++  +  I K FG        G+K  ++  AL +     + +L RE +A
Sbjct: 96  YWKSHPDMIIAVVGSLGNIGKTFGAAC-SLLVGKKLENLHEALSNTRTDGVGALLREGSA 154

Query: 592 SLINSYAHKDFPLSTSQVVSQFNDALETSQTAAQQA 699
           + +NS  +K FP +T QV      ++ +   A+ QA
Sbjct: 155 AFLNSIVNKKFPFTTQQVKDCIAVSVTSDDAASAQA 190


>tr|Q0JJP4|Q0JJP4_ORYSJ Os01g0726700 protein OS=Oryza sativa subsp.
           japonica GN=Os01g0726700 PE=4 SV=1
          Length = 662

 Score = 39.7 bits (91), Expect = 0.19
 Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
 Frame = +1

Query: 466 IAKLFGPRLLKFFAGRKPPSILGALKDQSPMPLSSLAREATASLINSYAHKDFPLSTSQV 645
           +A+LFGP     F      ++  AL +     +  L RE TASL+NS  +  FP +T QV
Sbjct: 572 MARLFGPTAAAPFG--HDLTVPEALANTRADGVGELYREGTASLLNSMVNSRFPFTTQQV 629

Query: 646 VSQFNDALET--SQTAAQQA 699
              F+ AL +     AA QA
Sbjct: 630 KDAFSAALSSGGDHAAAAQA 649


>tr|B8A8Z5|B8A8Z5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_03588 PE=4 SV=1
          Length = 625

 Score = 39.7 bits (91), Expect = 0.19
 Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
 Frame = +1

Query: 466 IAKLFGPRLLKFFAGRKPPSILGALKDQSPMPLSSLAREATASLINSYAHKDFPLSTSQV 645
           +A+LFGP     F      ++  AL +     +  L RE TASL+NS  +  FP +T QV
Sbjct: 535 MARLFGPTAAAPFG--HDLTVPEALANTRADGVGELYREGTASLLNSMVNSRFPFTTQQV 592

Query: 646 VSQFNDALET--SQTAAQQA 699
              F+ AL +     AA QA
Sbjct: 593 KDAFSAALSSGGDHAAAAQA 612