DK950059
Clone id TST38A01NGRL0007_K12
Library
Length 777
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0007_K12. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence
TGCATGCTTTGGCTTCCTTCCTCAGACGTAAACGATGAAGGAAGCATTAATGATAAAAAG
CAGGATTCGGATCAGTCTTATCTGGTTCTCCTTAGTAGGCAAAGGGAATATACTGTTTTT
GATCCCCTCACACAGAAAGACGCTTTAGAGCCAGCCTCCAAGAAGAGCTTTGATAGAGTA
GAAAACAAGGGTCTGTCAACGTTTGCAAAAGTTTATGGAAAAGCTGTTCATGCTCTTCCA
AGACCTGAAAGGGCTTTTTTGGAAAGTGGTGGAGCTCAACCACAAGGGAAGTTTTTGAAC
TGCCCATCTCATTTAATCTCTCTTAAAAGCATTGGTTTTTCTTACATCGAATCTTTATTG
GAACGGAAAACTGGTGTTGCACAATGATGCATGGAAATGTGTAGGCGTAGGGCAAACACC
CTTTGCCACCAAGGTTAAGAATCTCAAATTGAATGGCTACTCTTGTCCCTCATTAATTGC
AGAAATGTTTTAGCTTTCAGCGAAGCCATTGATTGTAGATCATCCTCACTGCCACTACTG
GTAGAGTGCACCATGAGACATAGAGGTTCCATAAATAACAGGGTGCAAGTATAATGCGAG
GGTTGTGAATTTGCAAGAGTATGTGGTGCTGGTGTTTGGCTGTACTTCTAAAGTAGTTTG
GTGTATGGATATGTATCAGGTGTTTTAATTTTACGCTGAAAGGGGATTTGTGGAATGGTT
ATTTATAATTTTTGAAAGAGAAATTTTTCATGAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9NQS3
Definition sp|Q9NQS3|PVRL3_HUMAN Poliovirus receptor-related protein 3 OS=Homo sapiens
Align length 59
Score (bit) 32.0
E-value 3.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950059|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0007_K12, 5'
(752 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9NQS3|PVRL3_HUMAN Poliovirus receptor-related protein 3 OS=H... 32 3.7
sp|Q0GBX5|L_RABVD Large structural protein OS=Rabies virus (stra... 32 3.7
sp|Q153Z0|CASPC_MACMU Caspase-12 OS=Macaca mulatta PE=2 SV=1 32 4.9
sp|Q9JLB9|PVRL3_MOUSE Poliovirus receptor-related protein 3 OS=M... 31 6.4
sp|Q9C688|RAVL3_ARATH RAV1-like ethylene-responsive transcriptio... 31 8.3

>sp|Q9NQS3|PVRL3_HUMAN Poliovirus receptor-related protein 3 OS=Homo
sapiens GN=PVRL3 PE=1 SV=1
Length = 549

Score = 32.0 bits (71), Expect = 3.7
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = +1

Query: 10 WLPSSDVNDEGSINDKKQDSDQSYLVLLSRQREYTVFDPLTQKDALEPASKKSFDRVEN 186
++P SD+ E I+ +QD SY + ++ + V + L +KD LE K ++ VEN
Sbjct: 443 YIPPSDMQKESQIDVLQQDELDSYPDSVKKENKNPV-NNLIRKDYLEEPEKTQWNNVEN 500


>sp|Q0GBX5|L_RABVD Large structural protein OS=Rabies virus (strain
China/DRV) GN=L PE=3 SV=1
Length = 2127

Score = 32.0 bits (71), Expect = 3.7
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +1

Query: 115 VFDPLTQKDALEPASKKSFDRVENKGLSTFAKV 213
+FD LT D L KK DRV +GLS +++V
Sbjct: 579 LFDALTMTDNLNKVFKKLIDRVTGQGLSDYSRV 611


>sp|Q153Z0|CASPC_MACMU Caspase-12 OS=Macaca mulatta PE=2 SV=1
Length = 421

Score = 31.6 bits (70), Expect = 4.9
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Frame = +1

Query: 133 QKDALEPASKKSFDRVENKGLSTFAKVYGKAVHALPRPERAFLESGGAQPQGKFLNCP-S 309
Q+ AS S E + + + + H++ P A LE GAQP G+ CP +
Sbjct: 95 QESEESSASSSSSTESEEENEESKDEERAASAHSMAVPPTAPLEIQGAQPSGRLKLCPHA 154

Query: 310 HLISLKSIGFSYIESLLERKTGVAQ*CMEMCRRRANTLCHQ 432
H LK+ I ++E K G + + +C + + L ++
Sbjct: 155 HFRELKTKRADEIYPVME-KEGRTRLALIICSKEFHYLLNR 194


>sp|Q9JLB9|PVRL3_MOUSE Poliovirus receptor-related protein 3 OS=Mus
musculus GN=Pvrl3 PE=1 SV=1
Length = 549

Score = 31.2 bits (69), Expect = 6.4
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = +1

Query: 10 WLPSSDVNDEGSINDKKQDSDQSYLVLLSRQREYTVFDPLTQKDALEPASKKSFDRVEN 186
++P SD+ E I+ QD SY + ++ + V + L +KD LE K ++ VEN
Sbjct: 443 YIPPSDMQKESQIDVLHQDELDSYPDSVKKENKNPV-NNLIRKDYLEEPEKTQWNNVEN 500


>sp|Q9C688|RAVL3_ARATH RAV1-like ethylene-responsive transcription
factor At1g51120 OS=Arabidopsis thaliana GN=At1g51120
PE=2 SV=1
Length = 352

Score = 30.8 bits (68), Expect = 8.3
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2

Query: 304 GSSKTSLVVELHHFPKKPFQVLEEHEQLFHKL 209
G SKT L++++HHF F V EE + H++
Sbjct: 285 GQSKTFLMIDVHHFSGNGFVVPEEVNKTVHEI 316


tr_hit_id Q3J590
Definition tr|Q3J590|Q3J590_RHOS4 Guanine deaminase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
Align length 63
Score (bit) 35.0
E-value 5.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950059|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0007_K12, 5'
(752 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q3J590|Q3J590_RHOS4 Guanine deaminase OS=Rhodobacter sphaeroi... 35 5.4
tr|A8XXU1|A8XXU1_CAEBR CBR-MNAT-1 protein OS=Caenorhabditis brig... 35 7.0

>tr|Q3J590|Q3J590_RHOS4 Guanine deaminase OS=Rhodobacter sphaeroides
(strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
GN=RHOS4_04760 PE=4 SV=1
Length = 433

Score = 35.0 bits (79), Expect = 5.4
Identities = 22/63 (34%), Positives = 31/63 (49%)
Frame = +1

Query: 121 DPLTQKDALEPASKKSFDRVENKGLSTFAKVYGKAVHALPRPERAFLESGGAQPQGKFLN 300
D + AL P ++ D E +GL V+G A+H PR ERA L GA ++
Sbjct: 239 DEIEWVKALHPQARDYLDTYEAQGLLREGAVFGHAIHLAPR-ERARLAEAGA----SLVH 293

Query: 301 CPS 309
CP+
Sbjct: 294 CPT 296


>tr|A8XXU1|A8XXU1_CAEBR CBR-MNAT-1 protein OS=Caenorhabditis
briggsae GN=Cbr-mnat-1 PE=4 SV=1
Length = 343

Score = 34.7 bits (78), Expect = 7.0
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 16/98 (16%)
Frame = +1

Query: 28 VNDEGSINDKKQDSDQSYLVLLSRQREYTVFDPLTQKDALEPASKKSFDRV-------EN 186
V D +I D+ +DS+ + V+L R+R+ + L +KD E +++ + + EN
Sbjct: 209 VTDTRAIMDELRDSNVAAEVILDRERKKQIEKELEEKDEQEKRKRRNKEMLQTRKRAAEN 268

Query: 187 KGLSTFAKVYGKA---------VHALPRPERAFLESGG 273
+T ++ G+A ++ P P A +ES G
Sbjct: 269 MSFNTVIRIAGRAYVHQPLELVINGPPMPNSAEIESMG 306