DK950028 |
Clone id |
TST38A01NGRL0007_J02 |
Library |
TST38 |
Length |
613 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0007_J02. 5' end sequence. |
Accession |
DK950028 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL3704Contig1 |
Sequence |
CGGAGTTGGATGATGATGAGTTGTATGGAATGTGGAGTGTAGCTACAAGGATGCTGAGAC AGGTTGGCATCCCCTTCATCAGCTTGATCTTGAATCATGGTCGCTACCGCACACTCTACC ATTTAAATCTCAAACTGTGGGTGGGCAACAAAGCACATGACAAGTTCTTGTCAACATGCA ATGAAGAAACAAGAGAATTGTGGAATGGGCTCCAGAAATTCGCAGCAAACCGTCCTAAAA AGCAGCAACTTTGCTTTTTCTACAGAAGAGATGGGACTTGCAGGCATGGAGATTTTTGTA GCTATTCGCATGGAGAGTATCGAAATTAAATTCAATGATAGATTGGTATGTAGAGTTTAC CTCCACAATTTGCTATTTGAGGGGCCTGTGCTGAAGGTGTCTTTGGATATCGCTCGTCCA CAGAGGCAGCGTGTTCGCATCAGCTGCAGCAGTGTTTCTGGGACTACTTTCTCAGCCTTG TCTGTATGTTATTGAGGCCAAACTTTTGTGTTGGATCTTTGTATGCAGGCCTCTGGGTGC AAACTGCAAGCTTGTACTACTGGATGTCCCCTATCAACTATTTTCATGCAGCTATCAACA GACGCTGTTCTAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q8CHP0 |
Definition |
sp|Q8CHP0|ZC3H3_MOUSE Zinc finger CCCH domain-containing protein 3 OS=Mus musculus |
Align length |
90 |
Score (bit) |
34.7 |
E-value |
0.4 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK950028|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0007_J02, 5' (613 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q8CHP0|ZC3H3_MOUSE Zinc finger CCCH domain-containing protein... 35 0.40 sp|Q94131|PIE1_CAEEL Pharynx and intestine in excess protein 1 O... 35 0.40 sp|O48772|ZFN2_ARATH Zinc finger CCCH domain-containing protein ... 34 0.67 sp|Q8IXZ2|ZC3H3_HUMAN Zinc finger CCCH domain-containing protein... 34 0.67 sp|Q94AD9|ZFNL4_ARATH Zinc finger CCCH domain-containing protein... 33 0.88 sp|P46491|CRCB_HAEIN Protein crcB homolog OS=Haemophilus influen... 33 0.88 sp|Q4VBT5|MKRN1_DANRE Makorin-1 OS=Danio rerio GN=mkrn1 PE=2 SV=1 33 1.2 sp|Q688R3|C3H33_ORYSJ Zinc finger CCCH domain-containing protein... 33 1.5 sp|Q9TT91|MKRN1_MACEU Makorin-1 OS=Macropus eugenii GN=MKRN1 PE=... 32 2.0 sp|Q5NAV3|C3H5_ORYSJ Zinc finger CCCH domain-containing protein ... 32 2.0 sp|Q6ZPZ3|ZC3H4_MOUSE Zinc finger CCCH domain-containing protein... 32 2.6 sp|Q9UPT8|ZC3H4_HUMAN Zinc finger CCCH domain-containing protein... 32 2.6 sp|Q7TP17|U2AF4_RAT Splicing factor U2AF 26 kDa subunit OS=Rattu... 32 2.6 sp|Q8BGJ9|U2AF4_MOUSE Splicing factor U2AF 26 kDa subunit OS=Mus... 32 2.6 sp|Q8WU68|U2AF4_HUMAN Splicing factor U2AF 26 kDa subunit OS=Hom... 32 2.6 sp|Q3T127|U2AF4_BOVIN Splicing factor U2AF 26 kDa subunit OS=Bos... 32 2.6 sp|Q29350|U2AF1_PIG Splicing factor U2AF 35 kDa subunit (Fragmen... 32 2.6 sp|Q9D883|U2AF1_MOUSE Splicing factor U2AF 35 kDa subunit OS=Mus... 32 2.6 sp|Q01081|U2AF1_HUMAN Splicing factor U2AF 35 kDa subunit OS=Hom... 32 2.6 sp|Q94535|U2AF1_DROME Splicing factor U2af 38 kDa subunit OS=Dro... 32 2.6 sp|A1A4K8|U2AF1_BOVIN Splicing factor U2AF 35 kDa subunit OS=Bos... 32 2.6 sp|P23949|TISD_MOUSE Butyrate response factor 2 OS=Mus musculus ... 32 2.6 sp|P47974|TISD_HUMAN Butyrate response factor 2 OS=Homo sapiens ... 32 2.6 sp|P17431|TISB_RAT Butyrate response factor 1 OS=Rattus norvegic... 32 2.6 sp|P23950|TISB_MOUSE Butyrate response factor 1 OS=Mus musculus ... 32 2.6 sp|Q07352|TISB_HUMAN Butyrate response factor 1 OS=Homo sapiens ... 32 2.6 sp|Q9H000|MKRN2_HUMAN Makorin-2 OS=Homo sapiens GN=MKRN2 PE=2 SV=2 32 3.3 sp|P47976|CTH1_YEAST mRNA decay factor CTH1 OS=Saccharomyces cer... 28 3.5 sp|Q5RJC5|ZFNL5_ARATH Zinc finger CCCH domain-containing protein... 31 4.4 sp|Q8N5P1|ZC3H8_HUMAN Zinc finger CCCH domain-containing protein... 31 4.4
>sp|Q8CHP0|ZC3H3_MOUSE Zinc finger CCCH domain-containing protein 3 OS=Mus musculus GN=Zc3h3 PE=2 SV=1 Length = 950
Score = 34.7 bits (78), Expect = 0.40 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 5/90 (5%) Frame = +3
Query: 231 RPKKQQLCFFYRRDGTCRHGDFCSYSHGEYRN*IQ**IGM*SLPPQFAI*GACAEGVFGY 410 + KK++ C +Y R G C G+ C Y H P + A+ C V G Sbjct: 661 KEKKREYCMYYNRFGRCNRGECCPYIHD---------------PEKVAV---CTRFVRGT 702
Query: 411 RSSTEAAC--SHQL---QQCFWDYFLSLVC 485 T+ +C SH + + YFL +C Sbjct: 703 CKKTDGSCPFSHHVSKEKMPVCSYFLKGIC 732
>sp|Q94131|PIE1_CAEEL Pharynx and intestine in excess protein 1 OS=Caenorhabditis elegans GN=pie-1 PE=1 SV=1 Length = 335
Score = 34.7 bits (78), Expect = 0.40 Identities = 12/26 (46%), Positives = 19/26 (73%) Frame = +3
Query: 240 KQQLCFFYRRDGTCRHGDFCSYSHGE 317 K +LC +RR+G C + D C+Y+HG+ Sbjct: 100 KTRLCDAFRREGYCPYNDNCTYAHGQ 125
>sp|O48772|ZFN2_ARATH Zinc finger CCCH domain-containing protein ZFN2 OS=Arabidopsis thaliana GN=ZFN2 PE=2 SV=1 Length = 453
Score = 33.9 bits (76), Expect = 0.67 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = +3
Query: 252 CFFYRRDGTCRHGDFCSYSHGEYR 323 C F+ GTC++GD C YSH + R Sbjct: 267 CRFFMNTGTCKYGDDCKYSHPKER 290
>sp|Q8IXZ2|ZC3H3_HUMAN Zinc finger CCCH domain-containing protein 3 OS=Homo sapiens GN=ZC3H3 PE=1 SV=2 Length = 948
Score = 33.9 bits (76), Expect = 0.67 Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 5/90 (5%) Frame = +3
Query: 231 RPKKQQLCFFYRRDGTCRHGDFCSYSHGEYRN*IQ**IGM*SLPPQFAI*GACAEGVFGY 410 R K+++ C +Y R G C G+ C Y H P + A+ C V G Sbjct: 666 REKRKEYCMYYNRFGRCNRGERCPYIHD---------------PEKVAV---CTRFVRGT 707
Query: 411 RSSTEAAC--SHQL---QQCFWDYFLSLVC 485 T+ C SH + + YFL +C Sbjct: 708 CKKTDGTCPFSHHVSKEKMPVCSYFLKGIC 737
>sp|Q94AD9|ZFNL4_ARATH Zinc finger CCCH domain-containing protein ZFN-like 4 OS=Arabidopsis thaliana GN=At1g04990 PE=2 SV=1 Length = 404
Score = 33.5 bits (75), Expect = 0.88 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = +3
Query: 243 QQLCFFYRRDGTCRHGDFCSYSH 311 Q C F+ GTC++GD C YSH Sbjct: 264 QPECRFFMNTGTCKYGDDCKYSH 286
>sp|P46491|CRCB_HAEIN Protein crcB homolog OS=Haemophilus influenzae GN=crcB PE=3 SV=1 Length = 160
Score = 33.5 bits (75), Expect = 0.88 Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Frame = +3
Query: 396 GVFGYRSSTEAACSHQLQQCFWDYFLSLVCMLLRPNF-CVGSLYAGLWVQTASLYYWMSP 572 G G ++ + S ++ F D +L+ C+L+ F C+ G+W+ L ++++P Sbjct: 71 GFLGSLTTFSSFSSEVVELFFNDKWLNGFCVLMMHLFGCLAMTVLGIWIYKICLNFYLNP 130
Query: 573 INYFHAAINRR 605 I++ A +N++ Sbjct: 131 IHFGFAQLNQQ 141
>sp|Q4VBT5|MKRN1_DANRE Makorin-1 OS=Danio rerio GN=mkrn1 PE=2 SV=1 Length = 439
Score = 33.1 bits (74), Expect = 1.2 Identities = 16/35 (45%), Positives = 22/35 (62%) Frame = +3
Query: 213 QKFAANRPKKQQLCFFYRRDGTCRHGDFCSYSHGE 317 +K AN+ K+QLC Y G CR+G C+Y HG+ Sbjct: 156 EKEQANKEMKKQLCP-YAAVGECRYGLNCAYLHGD 189
>sp|Q688R3|C3H33_ORYSJ Zinc finger CCCH domain-containing protein 33 OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2 SV=1 Length = 601
Score = 32.7 bits (73), Expect = 1.5 Identities = 11/23 (47%), Positives = 16/23 (69%) Frame = +3
Query: 252 CFFYRRDGTCRHGDFCSYSHGEY 320 C +R+ G+CR GD C Y+HG + Sbjct: 258 CPEFRKGGSCRKGDACEYAHGVF 280
>sp|Q9TT91|MKRN1_MACEU Makorin-1 OS=Macropus eugenii GN=MKRN1 PE=2 SV=1 Length = 478
Score = 32.3 bits (72), Expect = 2.0 Identities = 16/36 (44%), Positives = 21/36 (58%) Frame = +3
Query: 210 LQKFAANRPKKQQLCFFYRRDGTCRHGDFCSYSHGE 317 L+K N K+QLC Y G CR+G+ C Y HG+ Sbjct: 196 LEKQQTNVEMKKQLCP-YAAVGECRYGENCVYLHGD 230
>sp|Q5NAV3|C3H5_ORYSJ Zinc finger CCCH domain-containing protein 5 OS=Oryza sativa subsp. japonica GN=Os01g0257400 PE=2 SV=1 Length = 466
Score = 32.3 bits (72), Expect = 2.0 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%) Frame = +3
Query: 207 GLQKFAANRPKK--QQLCFFYRRDGTCRHGDFCSYSH 311 G +A P++ Q +C +Y ++GTC+ G C Y H Sbjct: 90 GKTTHSAEYPERPGQPVCEYYMKNGTCKFGSNCKYDH 126
Score = 32.0 bits (71), Expect = 2.6 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = +3
Query: 243 QQLCFFYRRDGTCRHGDFCSYSHGEYRN 326 Q C +Y + G+C+ G C Y H +Y N Sbjct: 302 QPECQYYLKTGSCKFGSACKYHHPQYLN 329
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B3G4N1 |
Definition |
tr|B3G4N1|B3G4N1_9BILA Diadenosine tetraphosphate hydrolase HIT family-like protein OS=Adineta vaga |
Align length |
81 |
Score (bit) |
48.5 |
E-value |
0.0003 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK950028|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0007_J02, 5' (613 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B3G4N1|B3G4N1_9BILA Diadenosine tetraphosphate hydrolase HIT ... 49 3e-04 tr|Q55FX6|Q55FX6_DICDI Putative uncharacterized protein OS=Dicty... 45 0.003 tr|O02289|O02289_CAEEL Protein T02E1.3b, partially confirmed by ... 40 0.11 tr|A8Q622|A8Q622_MALGO Putative uncharacterized protein OS=Malas... 40 0.14 tr|Q9SKM5|Q9SKM5_ARATH Putative RNA methyltransferase OS=Arabido... 39 0.18 tr|Q8L7S3|Q8L7S3_ARATH At2g28450/T1B3.3 OS=Arabidopsis thaliana ... 39 0.18 tr|Q57VA6|Q57VA6_9TRYP Putative uncharacterized protein OS=Trypa... 39 0.31 tr|A1CCJ2|A1CCJ2_ASPCL CCCH zinc finger DNA binding protein OS=A... 38 0.40 tr|Q6NYS5|Q6NYS5_DANRE Zgc:76924 OS=Danio rerio GN=zgc:76924 PE=... 38 0.53 tr|B6P3J4|B6P3J4_BRAFL Putative uncharacterized protein OS=Branc... 38 0.53 tr|Q4JFB7|Q4JFB7_CAEEL Protein T02E1.3a, partially confirmed by ... 37 0.90 tr|B0CUH3|B0CUH3_LACBS Predicted protein OS=Laccaria bicolor (st... 37 0.90 tr|A7NZI6|A7NZI6_VITVI Chromosome chr6 scaffold_3, whole genome ... 36 1.5 tr|A4RQU5|A4RQU5_OSTLU Predicted protein OS=Ostreococcus lucimar... 36 1.5 tr|Q247W7|Q247W7_TETTH Zinc finger protein, putative (Fragment) ... 36 1.5 tr|Q54NS6|Q54NS6_DICDI RNA-binding region-containing protein (RN... 36 2.0 tr|A0CX21|A0CX21_PARTE Chromosome undetermined scaffold_3, whole... 36 2.0 tr|A7E9W5|A7E9W5_SCLS1 Putative uncharacterized protein OS=Scler... 36 2.0 tr|A6S9G5|A6S9G5_BOTFB Putative uncharacterized protein OS=Botry... 36 2.0 tr|B7ZDB6|B7ZDB6_DANRE Novel protein (Fragment) OS=Danio rerio G... 35 2.6 tr|B8BR88|B8BR88_THAPS Predicted protein OS=Thalassiosira pseudo... 35 2.6 tr|A9V1Z1|A9V1Z1_MONBE Predicted protein OS=Monosiga brevicollis... 35 3.4 tr|Q3UUL4|Q3UUL4_MOUSE Putative uncharacterized protein OS=Mus m... 35 4.5 tr|Q54X64|Q54X64_DICDI Putative uncharacterized protein OS=Dicty... 35 4.5 tr|B3SDC6|B3SDC6_TRIAD Putative uncharacterized protein (Fragmen... 35 4.5 tr|A8XYS5|A8XYS5_CAEBR CBR-MEX-1 protein OS=Caenorhabditis brigg... 35 4.5 tr|A8PZ91|A8PZ91_BRUMA Zinc finger CCCH type domain containing p... 35 4.5 tr|Q4T1G4|Q4T1G4_TETNG Chromosome 10 SCAF10606, whole genome sho... 34 5.8 tr|Q6H2Y6|Q6H2Y6_TRYCR CCCH zinc-finger protein OS=Trypanosoma c... 34 5.8 tr|Q57VA5|Q57VA5_9TRYP Putative uncharacterized protein OS=Trypa... 34 5.8
>tr|B3G4N1|B3G4N1_9BILA Diadenosine tetraphosphate hydrolase HIT family-like protein OS=Adineta vaga PE=4 SV=1 Length = 258
Score = 48.5 bits (114), Expect = 3e-04 Identities = 22/81 (27%), Positives = 45/81 (55%) Frame = +3
Query: 3 ELDDDELYGMWSVATRMLRQVGIPFISLILNHGRYRTLYHLNLKLWVGNKAHDKFLSTCN 182 ++ D+E+ W +L +VG+ + S+I+NHG YR +HL++K+ + ++F+ Sbjct: 159 DMTDEEMILFWKDTQLILNEVGVNWQSMIINHGLYRNHFHLHMKINIEQNQWNQFIQNRY 218
Query: 183 EETRELWNGLQKFAANRPKKQ 245 ++ E N L + + P +Q Sbjct: 219 KDKIEQMNDLLSSSEDNPIQQ 239
>tr|Q55FX6|Q55FX6_DICDI Putative uncharacterized protein OS=Dictyostelium discoideum GN=DDB_0216566 PE=4 SV=1 Length = 365
Score = 45.4 bits (106), Expect = 0.003 Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 1/63 (1%) Frame = +3
Query: 129 LKLWVGNKAHDKFLST-CNEETRELWNGLQKFAANRPKKQQLCFFYRRDGTCRHGDFCSY 305 LK GN D+ S CN + +++ N + N K+Q +CFF+ R G CR+GD C Y Sbjct: 12 LKAVPGNYFFDEHSSNQCNNQHQQINN--KNNNNNISKEQNICFFFSRKGYCRNGDDCRY 69
Query: 306 SHG 314 HG Sbjct: 70 IHG 72
>tr|O02289|O02289_CAEEL Protein T02E1.3b, partially confirmed by transcript evidence OS=Caenorhabditis elegans GN=gla-3 PE=1 SV=4 Length = 679
Score = 40.0 bits (92), Expect = 0.11 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 5/40 (12%) Frame = +3
Query: 213 QKFAANRP-----KKQQLCFFYRRDGTCRHGDFCSYSHGE 317 Q F +NR +K ++C +RR G+C +GD C Y+HGE Sbjct: 57 QNFTSNREHNPALRKTKICDHWRRSGSCSYGDACWYAHGE 96
>tr|A8Q622|A8Q622_MALGO Putative uncharacterized protein OS=Malassezia globosa (strain ATCC 96807 / CBS 7966) GN=MGL_2843 PE=4 SV=1 Length = 500
Score = 39.7 bits (91), Expect = 0.14 Identities = 17/37 (45%), Positives = 21/37 (56%) Frame = +3
Query: 213 QKFAANRPKKQQLCFFYRRDGTCRHGDFCSYSHGEYR 323 Q+ A R K QLC +Y R GTCR G C + H + R Sbjct: 225 QQRALERAKTPQLCTYYTRTGTCRRGTQCPFIHDDQR 261
>tr|Q9SKM5|Q9SKM5_ARATH Putative RNA methyltransferase OS=Arabidopsis thaliana GN=At2g28450 PE=2 SV=1 Length = 850
Score = 39.3 bits (90), Expect = 0.18 Identities = 13/26 (50%), Positives = 19/26 (73%) Frame = +3
Query: 240 KQQLCFFYRRDGTCRHGDFCSYSHGE 317 K LC ++RR+ +C HG+ C Y+HGE Sbjct: 81 KTSLCSYFRREASCSHGNECKYAHGE 106
>tr|Q8L7S3|Q8L7S3_ARATH At2g28450/T1B3.3 OS=Arabidopsis thaliana GN=At2g28450 PE=2 SV=1 Length = 809
Score = 39.3 bits (90), Expect = 0.18 Identities = 13/26 (50%), Positives = 19/26 (73%) Frame = +3
Query: 240 KQQLCFFYRRDGTCRHGDFCSYSHGE 317 K LC ++RR+ +C HG+ C Y+HGE Sbjct: 81 KTSLCSYFRREASCSHGNECKYAHGE 106
>tr|Q57VA6|Q57VA6_9TRYP Putative uncharacterized protein OS=Trypanosoma brucei GN=Tb927.5.1570 PE=4 SV=1 Length = 167
Score = 38.5 bits (88), Expect = 0.31 Identities = 15/33 (45%), Positives = 24/33 (72%), Gaps = 2/33 (6%) Frame = +3
Query: 231 RPKKQQ--LCFFYRRDGTCRHGDFCSYSHGEYR 323 +P K + LC Y+RDG C +GD C+++HGE++ Sbjct: 11 KPSKYRTTLCEHYQRDGQCPYGDRCAFAHGEHQ 43
>tr|A1CCJ2|A1CCJ2_ASPCL CCCH zinc finger DNA binding protein OS=Aspergillus clavatus GN=ACLA_062120 PE=4 SV=1 Length = 426
Score = 38.1 bits (87), Expect = 0.40 Identities = 16/29 (55%), Positives = 21/29 (72%) Frame = +3
Query: 228 NRPKKQQLCFFYRRDGTCRHGDFCSYSHG 314 N+ K ++LC Y GTC +GDFCS+SHG Sbjct: 331 NQIKGRKLCNEYHILGTCDYGDFCSHSHG 359
>tr|Q6NYS5|Q6NYS5_DANRE Zgc:76924 OS=Danio rerio GN=zgc:76924 PE=2 SV=1 Length = 310
Score = 37.7 bits (86), Expect = 0.53 Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 6/66 (9%) Frame = +3
Query: 147 NKAHDKFLSTCNEETRELWNGLQKFAANRPK----KQQLCFFYRRDGTCRHGDFCSYSHG 314 NK D+ S E +++L LQ+ ++ K +LC + +G+C++G+ C ++HG Sbjct: 21 NKYRDRAFSDAGERSQQLQEMLQQKPGSQINSTRYKTELCRPFEENGSCKYGEKCQFAHG 80
Query: 315 --EYRN 326 E RN Sbjct: 81 YHELRN 86
>tr|B6P3J4|B6P3J4_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae GN=BRAFLDRAFT_130013 PE=4 SV=1 Length = 2953
Score = 37.7 bits (86), Expect = 0.53 Identities = 14/26 (53%), Positives = 18/26 (69%) Frame = +3
Query: 240 KQQLCFFYRRDGTCRHGDFCSYSHGE 317 K ++C +R GTCR GD C Y+HGE Sbjct: 2770 KTEMCSNFRSSGTCRFGDKCLYAHGE 2795
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