DK950028
Clone id TST38A01NGRL0007_J02
Library
Length 613
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0007_J02. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence
CGGAGTTGGATGATGATGAGTTGTATGGAATGTGGAGTGTAGCTACAAGGATGCTGAGAC
AGGTTGGCATCCCCTTCATCAGCTTGATCTTGAATCATGGTCGCTACCGCACACTCTACC
ATTTAAATCTCAAACTGTGGGTGGGCAACAAAGCACATGACAAGTTCTTGTCAACATGCA
ATGAAGAAACAAGAGAATTGTGGAATGGGCTCCAGAAATTCGCAGCAAACCGTCCTAAAA
AGCAGCAACTTTGCTTTTTCTACAGAAGAGATGGGACTTGCAGGCATGGAGATTTTTGTA
GCTATTCGCATGGAGAGTATCGAAATTAAATTCAATGATAGATTGGTATGTAGAGTTTAC
CTCCACAATTTGCTATTTGAGGGGCCTGTGCTGAAGGTGTCTTTGGATATCGCTCGTCCA
CAGAGGCAGCGTGTTCGCATCAGCTGCAGCAGTGTTTCTGGGACTACTTTCTCAGCCTTG
TCTGTATGTTATTGAGGCCAAACTTTTGTGTTGGATCTTTGTATGCAGGCCTCTGGGTGC
AAACTGCAAGCTTGTACTACTGGATGTCCCCTATCAACTATTTTCATGCAGCTATCAACA
GACGCTGTTCTAG
■■Homology search results ■■ -
sp_hit_id Q8CHP0
Definition sp|Q8CHP0|ZC3H3_MOUSE Zinc finger CCCH domain-containing protein 3 OS=Mus musculus
Align length 90
Score (bit) 34.7
E-value 0.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950028|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0007_J02, 5'
(613 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q8CHP0|ZC3H3_MOUSE Zinc finger CCCH domain-containing protein... 35 0.40
sp|Q94131|PIE1_CAEEL Pharynx and intestine in excess protein 1 O... 35 0.40
sp|O48772|ZFN2_ARATH Zinc finger CCCH domain-containing protein ... 34 0.67
sp|Q8IXZ2|ZC3H3_HUMAN Zinc finger CCCH domain-containing protein... 34 0.67
sp|Q94AD9|ZFNL4_ARATH Zinc finger CCCH domain-containing protein... 33 0.88
sp|P46491|CRCB_HAEIN Protein crcB homolog OS=Haemophilus influen... 33 0.88
sp|Q4VBT5|MKRN1_DANRE Makorin-1 OS=Danio rerio GN=mkrn1 PE=2 SV=1 33 1.2
sp|Q688R3|C3H33_ORYSJ Zinc finger CCCH domain-containing protein... 33 1.5
sp|Q9TT91|MKRN1_MACEU Makorin-1 OS=Macropus eugenii GN=MKRN1 PE=... 32 2.0
sp|Q5NAV3|C3H5_ORYSJ Zinc finger CCCH domain-containing protein ... 32 2.0
sp|Q6ZPZ3|ZC3H4_MOUSE Zinc finger CCCH domain-containing protein... 32 2.6
sp|Q9UPT8|ZC3H4_HUMAN Zinc finger CCCH domain-containing protein... 32 2.6
sp|Q7TP17|U2AF4_RAT Splicing factor U2AF 26 kDa subunit OS=Rattu... 32 2.6
sp|Q8BGJ9|U2AF4_MOUSE Splicing factor U2AF 26 kDa subunit OS=Mus... 32 2.6
sp|Q8WU68|U2AF4_HUMAN Splicing factor U2AF 26 kDa subunit OS=Hom... 32 2.6
sp|Q3T127|U2AF4_BOVIN Splicing factor U2AF 26 kDa subunit OS=Bos... 32 2.6
sp|Q29350|U2AF1_PIG Splicing factor U2AF 35 kDa subunit (Fragmen... 32 2.6
sp|Q9D883|U2AF1_MOUSE Splicing factor U2AF 35 kDa subunit OS=Mus... 32 2.6
sp|Q01081|U2AF1_HUMAN Splicing factor U2AF 35 kDa subunit OS=Hom... 32 2.6
sp|Q94535|U2AF1_DROME Splicing factor U2af 38 kDa subunit OS=Dro... 32 2.6
sp|A1A4K8|U2AF1_BOVIN Splicing factor U2AF 35 kDa subunit OS=Bos... 32 2.6
sp|P23949|TISD_MOUSE Butyrate response factor 2 OS=Mus musculus ... 32 2.6
sp|P47974|TISD_HUMAN Butyrate response factor 2 OS=Homo sapiens ... 32 2.6
sp|P17431|TISB_RAT Butyrate response factor 1 OS=Rattus norvegic... 32 2.6
sp|P23950|TISB_MOUSE Butyrate response factor 1 OS=Mus musculus ... 32 2.6
sp|Q07352|TISB_HUMAN Butyrate response factor 1 OS=Homo sapiens ... 32 2.6
sp|Q9H000|MKRN2_HUMAN Makorin-2 OS=Homo sapiens GN=MKRN2 PE=2 SV=2 32 3.3
sp|P47976|CTH1_YEAST mRNA decay factor CTH1 OS=Saccharomyces cer... 28 3.5
sp|Q5RJC5|ZFNL5_ARATH Zinc finger CCCH domain-containing protein... 31 4.4
sp|Q8N5P1|ZC3H8_HUMAN Zinc finger CCCH domain-containing protein... 31 4.4

>sp|Q8CHP0|ZC3H3_MOUSE Zinc finger CCCH domain-containing protein 3
OS=Mus musculus GN=Zc3h3 PE=2 SV=1
Length = 950

Score = 34.7 bits (78), Expect = 0.40
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Frame = +3

Query: 231 RPKKQQLCFFYRRDGTCRHGDFCSYSHGEYRN*IQ**IGM*SLPPQFAI*GACAEGVFGY 410
+ KK++ C +Y R G C G+ C Y H P + A+ C V G
Sbjct: 661 KEKKREYCMYYNRFGRCNRGECCPYIHD---------------PEKVAV---CTRFVRGT 702

Query: 411 RSSTEAAC--SHQL---QQCFWDYFLSLVC 485
T+ +C SH + + YFL +C
Sbjct: 703 CKKTDGSCPFSHHVSKEKMPVCSYFLKGIC 732


>sp|Q94131|PIE1_CAEEL Pharynx and intestine in excess protein 1
OS=Caenorhabditis elegans GN=pie-1 PE=1 SV=1
Length = 335

Score = 34.7 bits (78), Expect = 0.40
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3

Query: 240 KQQLCFFYRRDGTCRHGDFCSYSHGE 317
K +LC +RR+G C + D C+Y+HG+
Sbjct: 100 KTRLCDAFRREGYCPYNDNCTYAHGQ 125


>sp|O48772|ZFN2_ARATH Zinc finger CCCH domain-containing protein
ZFN2 OS=Arabidopsis thaliana GN=ZFN2 PE=2 SV=1
Length = 453

Score = 33.9 bits (76), Expect = 0.67
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3

Query: 252 CFFYRRDGTCRHGDFCSYSHGEYR 323
C F+ GTC++GD C YSH + R
Sbjct: 267 CRFFMNTGTCKYGDDCKYSHPKER 290


>sp|Q8IXZ2|ZC3H3_HUMAN Zinc finger CCCH domain-containing protein 3
OS=Homo sapiens GN=ZC3H3 PE=1 SV=2
Length = 948

Score = 33.9 bits (76), Expect = 0.67
Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 5/90 (5%)
Frame = +3

Query: 231 RPKKQQLCFFYRRDGTCRHGDFCSYSHGEYRN*IQ**IGM*SLPPQFAI*GACAEGVFGY 410
R K+++ C +Y R G C G+ C Y H P + A+ C V G
Sbjct: 666 REKRKEYCMYYNRFGRCNRGERCPYIHD---------------PEKVAV---CTRFVRGT 707

Query: 411 RSSTEAAC--SHQL---QQCFWDYFLSLVC 485
T+ C SH + + YFL +C
Sbjct: 708 CKKTDGTCPFSHHVSKEKMPVCSYFLKGIC 737


>sp|Q94AD9|ZFNL4_ARATH Zinc finger CCCH domain-containing protein
ZFN-like 4 OS=Arabidopsis thaliana GN=At1g04990 PE=2
SV=1
Length = 404

Score = 33.5 bits (75), Expect = 0.88
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3

Query: 243 QQLCFFYRRDGTCRHGDFCSYSH 311
Q C F+ GTC++GD C YSH
Sbjct: 264 QPECRFFMNTGTCKYGDDCKYSH 286


>sp|P46491|CRCB_HAEIN Protein crcB homolog OS=Haemophilus influenzae
GN=crcB PE=3 SV=1
Length = 160

Score = 33.5 bits (75), Expect = 0.88
Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +3

Query: 396 GVFGYRSSTEAACSHQLQQCFWDYFLSLVCMLLRPNF-CVGSLYAGLWVQTASLYYWMSP 572
G G ++ + S ++ F D +L+ C+L+ F C+ G+W+ L ++++P
Sbjct: 71 GFLGSLTTFSSFSSEVVELFFNDKWLNGFCVLMMHLFGCLAMTVLGIWIYKICLNFYLNP 130

Query: 573 INYFHAAINRR 605
I++ A +N++
Sbjct: 131 IHFGFAQLNQQ 141


>sp|Q4VBT5|MKRN1_DANRE Makorin-1 OS=Danio rerio GN=mkrn1 PE=2 SV=1
Length = 439

Score = 33.1 bits (74), Expect = 1.2
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +3

Query: 213 QKFAANRPKKQQLCFFYRRDGTCRHGDFCSYSHGE 317
+K AN+ K+QLC Y G CR+G C+Y HG+
Sbjct: 156 EKEQANKEMKKQLCP-YAAVGECRYGLNCAYLHGD 189


>sp|Q688R3|C3H33_ORYSJ Zinc finger CCCH domain-containing protein 33
OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2
SV=1
Length = 601

Score = 32.7 bits (73), Expect = 1.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3

Query: 252 CFFYRRDGTCRHGDFCSYSHGEY 320
C +R+ G+CR GD C Y+HG +
Sbjct: 258 CPEFRKGGSCRKGDACEYAHGVF 280


>sp|Q9TT91|MKRN1_MACEU Makorin-1 OS=Macropus eugenii GN=MKRN1 PE=2
SV=1
Length = 478

Score = 32.3 bits (72), Expect = 2.0
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +3

Query: 210 LQKFAANRPKKQQLCFFYRRDGTCRHGDFCSYSHGE 317
L+K N K+QLC Y G CR+G+ C Y HG+
Sbjct: 196 LEKQQTNVEMKKQLCP-YAAVGECRYGENCVYLHGD 230


>sp|Q5NAV3|C3H5_ORYSJ Zinc finger CCCH domain-containing protein 5
OS=Oryza sativa subsp. japonica GN=Os01g0257400 PE=2
SV=1
Length = 466

Score = 32.3 bits (72), Expect = 2.0
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +3

Query: 207 GLQKFAANRPKK--QQLCFFYRRDGTCRHGDFCSYSH 311
G +A P++ Q +C +Y ++GTC+ G C Y H
Sbjct: 90 GKTTHSAEYPERPGQPVCEYYMKNGTCKFGSNCKYDH 126



Score = 32.0 bits (71), Expect = 2.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3

Query: 243 QQLCFFYRRDGTCRHGDFCSYSHGEYRN 326
Q C +Y + G+C+ G C Y H +Y N
Sbjct: 302 QPECQYYLKTGSCKFGSACKYHHPQYLN 329


tr_hit_id B3G4N1
Definition tr|B3G4N1|B3G4N1_9BILA Diadenosine tetraphosphate hydrolase HIT family-like protein OS=Adineta vaga
Align length 81
Score (bit) 48.5
E-value 0.0003
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950028|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0007_J02, 5'
(613 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B3G4N1|B3G4N1_9BILA Diadenosine tetraphosphate hydrolase HIT ... 49 3e-04
tr|Q55FX6|Q55FX6_DICDI Putative uncharacterized protein OS=Dicty... 45 0.003
tr|O02289|O02289_CAEEL Protein T02E1.3b, partially confirmed by ... 40 0.11
tr|A8Q622|A8Q622_MALGO Putative uncharacterized protein OS=Malas... 40 0.14
tr|Q9SKM5|Q9SKM5_ARATH Putative RNA methyltransferase OS=Arabido... 39 0.18
tr|Q8L7S3|Q8L7S3_ARATH At2g28450/T1B3.3 OS=Arabidopsis thaliana ... 39 0.18
tr|Q57VA6|Q57VA6_9TRYP Putative uncharacterized protein OS=Trypa... 39 0.31
tr|A1CCJ2|A1CCJ2_ASPCL CCCH zinc finger DNA binding protein OS=A... 38 0.40
tr|Q6NYS5|Q6NYS5_DANRE Zgc:76924 OS=Danio rerio GN=zgc:76924 PE=... 38 0.53
tr|B6P3J4|B6P3J4_BRAFL Putative uncharacterized protein OS=Branc... 38 0.53
tr|Q4JFB7|Q4JFB7_CAEEL Protein T02E1.3a, partially confirmed by ... 37 0.90
tr|B0CUH3|B0CUH3_LACBS Predicted protein OS=Laccaria bicolor (st... 37 0.90
tr|A7NZI6|A7NZI6_VITVI Chromosome chr6 scaffold_3, whole genome ... 36 1.5
tr|A4RQU5|A4RQU5_OSTLU Predicted protein OS=Ostreococcus lucimar... 36 1.5
tr|Q247W7|Q247W7_TETTH Zinc finger protein, putative (Fragment) ... 36 1.5
tr|Q54NS6|Q54NS6_DICDI RNA-binding region-containing protein (RN... 36 2.0
tr|A0CX21|A0CX21_PARTE Chromosome undetermined scaffold_3, whole... 36 2.0
tr|A7E9W5|A7E9W5_SCLS1 Putative uncharacterized protein OS=Scler... 36 2.0
tr|A6S9G5|A6S9G5_BOTFB Putative uncharacterized protein OS=Botry... 36 2.0
tr|B7ZDB6|B7ZDB6_DANRE Novel protein (Fragment) OS=Danio rerio G... 35 2.6
tr|B8BR88|B8BR88_THAPS Predicted protein OS=Thalassiosira pseudo... 35 2.6
tr|A9V1Z1|A9V1Z1_MONBE Predicted protein OS=Monosiga brevicollis... 35 3.4
tr|Q3UUL4|Q3UUL4_MOUSE Putative uncharacterized protein OS=Mus m... 35 4.5
tr|Q54X64|Q54X64_DICDI Putative uncharacterized protein OS=Dicty... 35 4.5
tr|B3SDC6|B3SDC6_TRIAD Putative uncharacterized protein (Fragmen... 35 4.5
tr|A8XYS5|A8XYS5_CAEBR CBR-MEX-1 protein OS=Caenorhabditis brigg... 35 4.5
tr|A8PZ91|A8PZ91_BRUMA Zinc finger CCCH type domain containing p... 35 4.5
tr|Q4T1G4|Q4T1G4_TETNG Chromosome 10 SCAF10606, whole genome sho... 34 5.8
tr|Q6H2Y6|Q6H2Y6_TRYCR CCCH zinc-finger protein OS=Trypanosoma c... 34 5.8
tr|Q57VA5|Q57VA5_9TRYP Putative uncharacterized protein OS=Trypa... 34 5.8

>tr|B3G4N1|B3G4N1_9BILA Diadenosine tetraphosphate hydrolase HIT
family-like protein OS=Adineta vaga PE=4 SV=1
Length = 258

Score = 48.5 bits (114), Expect = 3e-04
Identities = 22/81 (27%), Positives = 45/81 (55%)
Frame = +3

Query: 3 ELDDDELYGMWSVATRMLRQVGIPFISLILNHGRYRTLYHLNLKLWVGNKAHDKFLSTCN 182
++ D+E+ W +L +VG+ + S+I+NHG YR +HL++K+ + ++F+
Sbjct: 159 DMTDEEMILFWKDTQLILNEVGVNWQSMIINHGLYRNHFHLHMKINIEQNQWNQFIQNRY 218

Query: 183 EETRELWNGLQKFAANRPKKQ 245
++ E N L + + P +Q
Sbjct: 219 KDKIEQMNDLLSSSEDNPIQQ 239


>tr|Q55FX6|Q55FX6_DICDI Putative uncharacterized protein
OS=Dictyostelium discoideum GN=DDB_0216566 PE=4 SV=1
Length = 365

Score = 45.4 bits (106), Expect = 0.003
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +3

Query: 129 LKLWVGNKAHDKFLST-CNEETRELWNGLQKFAANRPKKQQLCFFYRRDGTCRHGDFCSY 305
LK GN D+ S CN + +++ N + N K+Q +CFF+ R G CR+GD C Y
Sbjct: 12 LKAVPGNYFFDEHSSNQCNNQHQQINN--KNNNNNISKEQNICFFFSRKGYCRNGDDCRY 69

Query: 306 SHG 314
HG
Sbjct: 70 IHG 72


>tr|O02289|O02289_CAEEL Protein T02E1.3b, partially confirmed by
transcript evidence OS=Caenorhabditis elegans GN=gla-3
PE=1 SV=4
Length = 679

Score = 40.0 bits (92), Expect = 0.11
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 5/40 (12%)
Frame = +3

Query: 213 QKFAANRP-----KKQQLCFFYRRDGTCRHGDFCSYSHGE 317
Q F +NR +K ++C +RR G+C +GD C Y+HGE
Sbjct: 57 QNFTSNREHNPALRKTKICDHWRRSGSCSYGDACWYAHGE 96


>tr|A8Q622|A8Q622_MALGO Putative uncharacterized protein
OS=Malassezia globosa (strain ATCC 96807 / CBS 7966)
GN=MGL_2843 PE=4 SV=1
Length = 500

Score = 39.7 bits (91), Expect = 0.14
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +3

Query: 213 QKFAANRPKKQQLCFFYRRDGTCRHGDFCSYSHGEYR 323
Q+ A R K QLC +Y R GTCR G C + H + R
Sbjct: 225 QQRALERAKTPQLCTYYTRTGTCRRGTQCPFIHDDQR 261


>tr|Q9SKM5|Q9SKM5_ARATH Putative RNA methyltransferase
OS=Arabidopsis thaliana GN=At2g28450 PE=2 SV=1
Length = 850

Score = 39.3 bits (90), Expect = 0.18
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +3

Query: 240 KQQLCFFYRRDGTCRHGDFCSYSHGE 317
K LC ++RR+ +C HG+ C Y+HGE
Sbjct: 81 KTSLCSYFRREASCSHGNECKYAHGE 106


>tr|Q8L7S3|Q8L7S3_ARATH At2g28450/T1B3.3 OS=Arabidopsis thaliana
GN=At2g28450 PE=2 SV=1
Length = 809

Score = 39.3 bits (90), Expect = 0.18
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +3

Query: 240 KQQLCFFYRRDGTCRHGDFCSYSHGE 317
K LC ++RR+ +C HG+ C Y+HGE
Sbjct: 81 KTSLCSYFRREASCSHGNECKYAHGE 106


>tr|Q57VA6|Q57VA6_9TRYP Putative uncharacterized protein
OS=Trypanosoma brucei GN=Tb927.5.1570 PE=4 SV=1
Length = 167

Score = 38.5 bits (88), Expect = 0.31
Identities = 15/33 (45%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
Frame = +3

Query: 231 RPKKQQ--LCFFYRRDGTCRHGDFCSYSHGEYR 323
+P K + LC Y+RDG C +GD C+++HGE++
Sbjct: 11 KPSKYRTTLCEHYQRDGQCPYGDRCAFAHGEHQ 43


>tr|A1CCJ2|A1CCJ2_ASPCL CCCH zinc finger DNA binding protein
OS=Aspergillus clavatus GN=ACLA_062120 PE=4 SV=1
Length = 426

Score = 38.1 bits (87), Expect = 0.40
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +3

Query: 228 NRPKKQQLCFFYRRDGTCRHGDFCSYSHG 314
N+ K ++LC Y GTC +GDFCS+SHG
Sbjct: 331 NQIKGRKLCNEYHILGTCDYGDFCSHSHG 359


>tr|Q6NYS5|Q6NYS5_DANRE Zgc:76924 OS=Danio rerio GN=zgc:76924 PE=2
SV=1
Length = 310

Score = 37.7 bits (86), Expect = 0.53
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Frame = +3

Query: 147 NKAHDKFLSTCNEETRELWNGLQKFAANRPK----KQQLCFFYRRDGTCRHGDFCSYSHG 314
NK D+ S E +++L LQ+ ++ K +LC + +G+C++G+ C ++HG
Sbjct: 21 NKYRDRAFSDAGERSQQLQEMLQQKPGSQINSTRYKTELCRPFEENGSCKYGEKCQFAHG 80

Query: 315 --EYRN 326
E RN
Sbjct: 81 YHELRN 86


>tr|B6P3J4|B6P3J4_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_130013 PE=4 SV=1
Length = 2953

Score = 37.7 bits (86), Expect = 0.53
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +3

Query: 240 KQQLCFFYRRDGTCRHGDFCSYSHGE 317
K ++C +R GTCR GD C Y+HGE
Sbjct: 2770 KTEMCSNFRSSGTCRFGDKCLYAHGE 2795