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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK949553
Clone id TST38A01NGRL0006_E18
Library
Length 676
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0006_E18. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
TGCAATTAGAGAATTCTAGGACCAACCATTTCCTGAAAACCCTAATTTCGCGAGCGATAC
GCAGTACGCAATACGCGAAGCTCACAGAGATCGGGAGCGAGCAAGCACGAGCAAGACGCC
AAACATGATTTACGACGTGAACTCAGCGCATTTCCGTTCCTTTCTCAGCCAGAAGGGGGG
TGCTGCAGACAGGAGAAAGAACGAAGAACAGAAGCCCAAGGAGCAGAAGCCCAAAGCCAA
TGAGAACAAGCCCGTCATGAACGAATGACCGAAGGAAACCTGCTCGACATGACTGAAGGT
GCCTCTACAATGAACGTGTGACAGGAAATTGTACTTTTCATTACAATGAAGATATTCTGT
TCCTCTTGGTAATATAGCAAGCAATAAAAATATAAGATGCAGAAGCCTCCATGAATTTGC
TGACCTTGATAAGGCATCTACAACCAAGGCATCTGCAACCAATGAAGGGCATTCATAAGG
AGAGAGACAGCGACCGAAGCCAGATAGAGGGATCTTTACCTAGTTTCGTTGGAATTATAT
ACTGTGTGCTGAAGTTTGCTTGAATTAGAGCAAGAGTTCCATGGAGGTGCCTTGCAGGTT
ATTCTCCCCAAACTTTCTCTCCTAACATCGCCCATTGTCTGGATGACCTGGAAATGGGAA
TTAACTGTGATTTGTA
■■Homology search results ■■ -
sp_hit_id Q09020
Definition sp|Q09020|PR4_PHAVU Wound-induced basic protein OS=Phaseolus vulgaris
Align length 24
Score (bit) 42.4
E-value 0.002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949553|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0006_E18, 5'
         (676 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q09020|PR4_PHAVU Wound-induced basic protein OS=Phaseolus vul...    42   0.002
sp|O25551|MVIN_HELPY Virulence factor mviN homolog OS=Helicobact...    31   6.8  

>sp|Q09020|PR4_PHAVU Wound-induced basic protein OS=Phaseolus
           vulgaris GN=PR4 PE=2 SV=1
          Length = 47

 Score = 42.4 bits (98), Expect = 0.002
 Identities = 19/24 (79%), Positives = 22/24 (91%)
 Frame = +2

Query: 125 MIYDVNSAHFRSFLSQKGGAADRR 196
           MIYDVNS  FRSFLSQKGG++D+R
Sbjct: 1   MIYDVNSPLFRSFLSQKGGSSDKR 24


>sp|O25551|MVIN_HELPY Virulence factor mviN homolog OS=Helicobacter
           pylori GN=mviN PE=3 SV=1
          Length = 461

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +3

Query: 495 RSQIEGSLPSFVGIIYCVLKFA*IRARVPWRCLAGYSPQTFSPNIAHCLDD 647
           RS I+GS  S VG+I+C++ F        W  L   +P   +  +A+  D+
Sbjct: 44  RSSIKGSFASLVGLIFCIVLFM-------WCLLVALNPLWLAKLLAYGFDE 87
tr_hit_id A9PAC8
Definition tr|A9PAC8|A9PAC8_POPTR Putative uncharacterized protein OS=Populus trichocarpa
Align length 24
Score (bit) 42.4
E-value 0.027
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949553|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0006_E18, 5'
         (676 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9PAC8|A9PAC8_POPTR Putative uncharacterized protein OS=Popul...    42   0.027
tr|A7R8C8|A7R8C8_VITVI Chromosome undetermined scaffold_2450, wh...    42   0.027
tr|A7QX91|A7QX91_VITVI Chromosome undetermined scaffold_215, who...    42   0.027
tr|Q9SFV3|Q9SFV3_ARATH Putative wound-induced basic protein (At3...    40   0.10 
tr|A9NK66|A9NK66_PICSI Putative uncharacterized protein OS=Picea...    40   0.14 
tr|B6SM71|B6SM71_MAIZE Putative uncharacterized protein OS=Zea m...    40   0.18 
tr|Q0INR8|Q0INR8_ORYSJ Os12g0405700 protein OS=Oryza sativa subs...    39   0.23 
tr|B8BP91|B8BP91_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.23 

>tr|A9PAC8|A9PAC8_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 47

 Score = 42.4 bits (98), Expect = 0.027
 Identities = 19/24 (79%), Positives = 22/24 (91%)
 Frame = +2

Query: 125 MIYDVNSAHFRSFLSQKGGAADRR 196
           MIYDVNS  FRSFLSQKGG++D+R
Sbjct: 1   MIYDVNSPLFRSFLSQKGGSSDKR 24


>tr|A7R8C8|A7R8C8_VITVI Chromosome undetermined scaffold_2450, whole
           genome shotgun sequence (Fragment) OS=Vitis vinifera
           GN=GSVIVT00011298001 PE=4 SV=1
          Length = 35

 Score = 42.4 bits (98), Expect = 0.027
 Identities = 19/24 (79%), Positives = 22/24 (91%)
 Frame = +2

Query: 125 MIYDVNSAHFRSFLSQKGGAADRR 196
           MIYDVNS  FRSFLSQKGG++D+R
Sbjct: 1   MIYDVNSPLFRSFLSQKGGSSDKR 24


>tr|A7QX91|A7QX91_VITVI Chromosome undetermined scaffold_215, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00009009001 PE=4 SV=1
          Length = 47

 Score = 42.4 bits (98), Expect = 0.027
 Identities = 19/24 (79%), Positives = 22/24 (91%)
 Frame = +2

Query: 125 MIYDVNSAHFRSFLSQKGGAADRR 196
           MIYDVNS  FRSFLSQKGG++D+R
Sbjct: 1   MIYDVNSPLFRSFLSQKGGSSDKR 24


>tr|Q9SFV3|Q9SFV3_ARATH Putative wound-induced basic protein
           (At3g07230) OS=Arabidopsis thaliana GN=At3g07230 PE=2
           SV=1
          Length = 46

 Score = 40.4 bits (93), Expect = 0.10
 Identities = 18/24 (75%), Positives = 21/24 (87%)
 Frame = +2

Query: 125 MIYDVNSAHFRSFLSQKGGAADRR 196
           MIYDVNS  FRSFLSQKG ++D+R
Sbjct: 1   MIYDVNSGLFRSFLSQKGSSSDKR 24


>tr|A9NK66|A9NK66_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 48

 Score = 40.0 bits (92), Expect = 0.14
 Identities = 21/25 (84%), Positives = 22/25 (88%), Gaps = 1/25 (4%)
 Frame = +2

Query: 125 MIYDVNSAHFRSFLSQKGG-AADRR 196
           MIYDVNS  FRSFLSQKGG AAD+R
Sbjct: 1   MIYDVNSPLFRSFLSQKGGAAADKR 25


>tr|B6SM71|B6SM71_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 46

 Score = 39.7 bits (91), Expect = 0.18
 Identities = 19/24 (79%), Positives = 20/24 (83%)
 Frame = +2

Query: 125 MIYDVNSAHFRSFLSQKGGAADRR 196
           MIYDVNS  FRSFLSQKGGA  R+
Sbjct: 1   MIYDVNSPLFRSFLSQKGGADKRK 24


>tr|Q0INR8|Q0INR8_ORYSJ Os12g0405700 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0405700 PE=4 SV=1
          Length = 48

 Score = 39.3 bits (90), Expect = 0.23
 Identities = 24/48 (50%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 125 MIYDVNSAHFRSFLSQKGGA-ADRRXXXXXXXXXXXXXXXXXXXVMNE 265
           MIYDVNS  FRSFLSQKGGA +D+R                   VMNE
Sbjct: 1   MIYDVNSPLFRSFLSQKGGASSDKRKMEEQKPKEQRPKASENKPVMNE 48


>tr|B8BP91|B8BP91_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_38066 PE=4 SV=1
          Length = 48

 Score = 39.3 bits (90), Expect = 0.23
 Identities = 24/48 (50%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 125 MIYDVNSAHFRSFLSQKGGA-ADRRXXXXXXXXXXXXXXXXXXXVMNE 265
           MIYDVNS  FRSFLSQKGGA +D+R                   VMNE
Sbjct: 1   MIYDVNSPLFRSFLSQKGGASSDKRKMEEQKPKEQRPKASENKPVMNE 48