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NBDC - LSDB Archive
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DK949403
Clone id TST38A01NGRL0005_O10
Library
Length 664
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0005_O10. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CGATCTCTCACTCGACGCACACTCTCATCAAAAGCGCACTCTCTAGTGTACTTGTGAGTG
TGCAGAGCTAAGTTGGCTTTACACACATACGCGCGCGCACACACCCAAACCCGTGCATTG
CCTCCCTCAGCGTCTCCCTGCCTGTGGCCGCCATGGCTCAATCTGCCCTTCTCTCCCGCT
CCTCAGCGCTCGCTTCCTCCTTCGCCAATTTCCAGGCAGGCTCCCGTATTGCAGCGTCGC
AGGCCGGCGGCCTCTCCTTCGCTCCCCTGCATTCCTCCAGGGTTTTCCAGTCCTCTCCCT
TGAAGACAGTTGCCCTCTTTGGCACCAAGACTCCCAAGAAGACAACTGGGTCCAAGCCTG
CCCCAAAGACGAAGGGAAAGGTTGAGGATGGCATTTTCGGGACCTCCGGTGGAATTGGCT
TCACCAAGCAAAACGAGCTCTTTGTTGGCCGAGTCGCCATGCTTGGGTTTGCGGCCTCTA
TTCTAGGTGAGGCCATCACAGGAAAGGGAACTCTTGCTCAATTCGACTTCGAGACAGGGT
TGCCACTAACTGAGACAGAGCCCCTTCTCCTCTTCTTCATTTTGTTTACATTGCTGGGTG
CTATTGGAGCTCTTGGTGACCGAGGAAAGTTTGTGGATGATCCTGCCGAGCCCACTGGGC
TTGA
■■Homology search results ■■ -
sp_hit_id P54773
Definition sp|P54773|PSBS_SOLLC Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum
Align length 94
Score (bit) 90.9
E-value 5.0e-18
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949403|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0005_O10, 5'
         (664 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P54773|PSBS_SOLLC Photosystem II 22 kDa protein, chloroplasti...    91   5e-18
sp|Q9SMB4|PSBS_TOBAC Photosystem II 22 kDa protein, chloroplasti...    89   2e-17
sp|Q9FPP4|PSBS_SOLSG Photosystem II 22 kDa protein, chloroplasti...    88   5e-17
sp|Q02060|PSBS_SPIOL Photosystem II 22 kDa protein, chloroplasti...    86   2e-16
sp|Q9XF91|PSBS_ARATH Photosystem II 22 kDa protein, chloroplasti...    83   1e-15
sp|P51532|SMCA4_HUMAN Probable global transcription activator SN...    37   0.12 
sp|P37370|VRP1_YEAST Verprolin OS=Saccharomyces cerevisiae GN=VR...    36   0.21 
sp|Q9NRR4|RNC_HUMAN Ribonuclease 3 OS=Homo sapiens GN=RNASEN PE=...    36   0.21 
sp|O43365|HXA3_HUMAN Homeobox protein Hox-A3 OS=Homo sapiens GN=...    36   0.21 
sp|P48367|YCF17_CYAPA Uncharacterized protein ycf17 OS=Cyanophor...    35   0.27 
sp|Q9Z0G8|WIPF3_RAT WAS/WASL-interacting protein family member 3...    35   0.27 
sp|Q08DG7|HXA3_BOVIN Homeobox protein Hox-A3 OS=Bos taurus GN=HO...    35   0.27 
sp|A6NGB9|WIPF3_HUMAN WAS/WASL-interacting protein family member...    35   0.36 
sp|Q7G6K7|FH3_ORYSJ Formin-like protein 3 OS=Oryza sativa subsp....    35   0.47 
sp|O14776|TCRG1_HUMAN Transcription elongation regulator 1 OS=Ho...    34   0.61 
sp|Q84L31|RD23C_ARATH Putative DNA repair protein RAD23-3 OS=Ara...    34   0.61 
sp|Q9FPQ6|GP1_CHLRE Vegetative cell wall protein gp1 OS=Chlamydo...    34   0.61 
sp|Q9S740|AGP19_ARATH Lysine-rich arabinogalactan protein 19 OS=...    34   0.61 
sp|P55194|3BP1_MOUSE SH3 domain-binding protein 1 OS=Mus musculu...    34   0.61 
sp|Q8TB24|RIN3_HUMAN Ras and Rab interactor 3 OS=Homo sapiens GN...    34   0.79 
sp|Q3AZB7|IF2_SYNS9 Translation initiation factor IF-2 OS=Synech...    34   0.79 
sp|P02831|HXA3_MOUSE Homeobox protein Hox-A3 OS=Mus musculus GN=...    34   0.79 
sp|Q75E67|ELOA1_ASHGO Elongin-A OS=Ashbya gossypii GN=ELA1 PE=3 ...    34   0.79 
sp|P04729|GDB1_WHEAT Gamma-gliadin B-I OS=Triticum aestivum PE=2...    33   1.0  
sp|P30599|CHS2_USTMA Chitin synthase 2 OS=Ustilago maydis GN=CHS...    33   1.0  
sp|Q7SAM0|BST1_NEUCR GPI inositol-deacylase OS=Neurospora crassa...    33   1.0  
sp|Q15637|SF01_HUMAN Splicing factor 1 OS=Homo sapiens GN=SF1 PE...    33   1.4  
sp|Q873A1|SEC31_NEUCR Protein transport protein sec-31 OS=Neuros...    33   1.4  
sp|Q6NZN1|PPRC1_MOUSE Peroxisome proliferator-activated receptor...    33   1.4  
sp|Q0D519|FH13_ORYSJ Formin-like protein 13 OS=Oryza sativa subs...    33   1.4  

>sp|P54773|PSBS_SOLLC Photosystem II 22 kDa protein, chloroplastic
           OS=Solanum lycopersicum GN=PSBS PE=3 SV=1
          Length = 276

 Score = 90.9 bits (224), Expect = 5e-18
 Identities = 51/94 (54%), Positives = 54/94 (57%)
 Frame = +3

Query: 381 VEDXXXXXXXXXXXXKQNELFVGRVAMLGFAASILGEAITGKGTLAQFDXXXXXXXXXXX 560
           VED            KQNELFVGRVAM+GFAAS+LGEAITGKG LAQ +           
Sbjct: 82  VEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAE 141

Query: 561 XXXXXXXXXXXXXAIGALGDRGKFVDDPAEPTGL 662
                        AIGALGDRGKFVDDP  PTGL
Sbjct: 142 PLLLFFILFNLLGAIGALGDRGKFVDDPTPPTGL 175



 Score = 49.7 bits (117), Expect = 1e-05
 Identities = 24/34 (70%), Positives = 27/34 (79%)
 Frame = +3

Query: 426 KQNELFVGRVAMLGFAASILGEAITGKGTLAQFD 527
           K NELFVGR+A LG A SI+GE ITGKG LAQ +
Sbjct: 203 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLN 236


>sp|Q9SMB4|PSBS_TOBAC Photosystem II 22 kDa protein, chloroplastic
           OS=Nicotiana tabacum GN=PSBS PE=2 SV=1
          Length = 274

 Score = 89.0 bits (219), Expect = 2e-17
 Identities = 50/94 (53%), Positives = 54/94 (57%)
 Frame = +3

Query: 381 VEDXXXXXXXXXXXXKQNELFVGRVAMLGFAASILGEAITGKGTLAQFDXXXXXXXXXXX 560
           VED            KQNELFVGRVAM+GFAAS+LGEAITGKG LAQ +           
Sbjct: 80  VEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAE 139

Query: 561 XXXXXXXXXXXXXAIGALGDRGKFVDDPAEPTGL 662
                        AIGAL DRGKF+DDPA PTGL
Sbjct: 140 PLLLFFILFNLLGAIGALEDRGKFIDDPAPPTGL 173



 Score = 49.7 bits (117), Expect = 1e-05
 Identities = 24/34 (70%), Positives = 27/34 (79%)
 Frame = +3

Query: 426 KQNELFVGRVAMLGFAASILGEAITGKGTLAQFD 527
           K NELFVGR+A LG A SI+GE ITGKG LAQ +
Sbjct: 201 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLN 234


>sp|Q9FPP4|PSBS_SOLSG Photosystem II 22 kDa protein, chloroplastic
           OS=Solanum sogarandinum GN=PSBS PE=2 SV=1
          Length = 276

 Score = 87.8 bits (216), Expect = 5e-17
 Identities = 49/94 (52%), Positives = 54/94 (57%)
 Frame = +3

Query: 381 VEDXXXXXXXXXXXXKQNELFVGRVAMLGFAASILGEAITGKGTLAQFDXXXXXXXXXXX 560
           VED            KQNELFVGRVAM+GFAAS+LGEAITGKG LAQ +           
Sbjct: 82  VEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAE 141

Query: 561 XXXXXXXXXXXXXAIGALGDRGKFVDDPAEPTGL 662
                        AIGALGDRG+F+DDPA  TGL
Sbjct: 142 PLLLFFILFNLLGAIGALGDRGRFIDDPAPATGL 175



 Score = 49.7 bits (117), Expect = 1e-05
 Identities = 24/34 (70%), Positives = 27/34 (79%)
 Frame = +3

Query: 426 KQNELFVGRVAMLGFAASILGEAITGKGTLAQFD 527
           K NELFVGR+A LG A SI+GE ITGKG LAQ +
Sbjct: 203 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLN 236


>sp|Q02060|PSBS_SPIOL Photosystem II 22 kDa protein, chloroplastic
           OS=Spinacia oleracea GN=PSBS PE=1 SV=1
          Length = 274

 Score = 85.5 bits (210), Expect = 2e-16
 Identities = 58/142 (40%), Positives = 68/142 (47%)
 Frame = +3

Query: 237 SQAGGLSFAPLHSSRVFQSSPLKTVALFXXXXXXXXXXXXXXXXXXXXVEDXXXXXXXXX 416
           S    L F+PL SS    S+  KT+ALF                    VED         
Sbjct: 37  SSTSNLFFSPLPSSSSSSSTVFKTLALFKSKAKAPKKVEKPKLK----VEDGLFGTSGGI 92

Query: 417 XXXKQNELFVGRVAMLGFAASILGEAITGKGTLAQFDXXXXXXXXXXXXXXXXXXXXXXX 596
              K+NELFVGRVAM+GFAAS+LGE ITGKG L+Q +                       
Sbjct: 93  GFTKENELFVGRVAMIGFAASLLGEGITGKGILSQLNLETGIPIYEAEPLLLFFILFTLL 152

Query: 597 XAIGALGDRGKFVDDPAEPTGL 662
            AIGALGDRG+FVD+P   TGL
Sbjct: 153 GAIGALGDRGRFVDEPT--TGL 172



 Score = 51.6 bits (122), Expect = 4e-06
 Identities = 24/34 (70%), Positives = 28/34 (82%)
 Frame = +3

Query: 426 KQNELFVGRVAMLGFAASILGEAITGKGTLAQFD 527
           K NELFVGR+A LGFA S++GE ITGKG LAQ +
Sbjct: 200 KSNELFVGRLAQLGFAFSLIGEIITGKGALAQLN 233


>sp|Q9XF91|PSBS_ARATH Photosystem II 22 kDa protein, chloroplastic
           OS=Arabidopsis thaliana GN=PSBS PE=1 SV=1
          Length = 265

 Score = 83.2 bits (204), Expect = 1e-15
 Identities = 49/94 (52%), Positives = 53/94 (56%)
 Frame = +3

Query: 381 VEDXXXXXXXXXXXXKQNELFVGRVAMLGFAASILGEAITGKGTLAQFDXXXXXXXXXXX 560
           VED            K NELFVGRVAM+GFAAS+LGEA+TGKG LAQ +           
Sbjct: 72  VEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIPIYEAE 131

Query: 561 XXXXXXXXXXXXXAIGALGDRGKFVDDPAEPTGL 662
                        AIGALGDRGKFVDDP  PTGL
Sbjct: 132 PLLLFFILFTLLGAIGALGDRGKFVDDP--PTGL 163



 Score = 48.9 bits (115), Expect = 2e-05
 Identities = 23/34 (67%), Positives = 27/34 (79%)
 Frame = +3

Query: 426 KQNELFVGRVAMLGFAASILGEAITGKGTLAQFD 527
           K NELFVGR+A LG A S++GE ITGKG LAQ +
Sbjct: 191 KANELFVGRLAQLGIAFSLIGEIITGKGALAQLN 224


>sp|P51532|SMCA4_HUMAN Probable global transcription activator
           SNF2L4 OS=Homo sapiens GN=SMARCA4 PE=1 SV=2
          Length = 1647

 Score = 36.6 bits (83), Expect = 0.12
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +1

Query: 121 PPSASPCLWP--PWLNLPF-SPAPQRSLPPSPISRQAPVLQRRRPAASPSLP 267
           PP   P  WP  P  N    +  PQ+ +PP P  R +P      PAASP +P
Sbjct: 276 PPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAASPVMP 327


>sp|P37370|VRP1_YEAST Verprolin OS=Saccharomyces cerevisiae GN=VRP1
           PE=1 SV=2
          Length = 817

 Score = 35.8 bits (81), Expect = 0.21
 Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 3/110 (2%)
 Frame = -1

Query: 664 SSPVGSAGSSTNFPRSPRAPIAPSNVNKMKKRRRGSVSVSGNPVSK---SN*ARVPFPVM 494
           SS  GS+G+ ++   S  AP  P     M   + G +   G P  K   +N +  P P  
Sbjct: 63  SSASGSSGTVSSKGPSMSAPPIPG----MGAPQLGDILAGGIPKLKHINNNASTKPSPSA 118

Query: 493 ASPRIEAANPSMATRPTKSSFCLVKPIPPEVPKMPSSTFPFVFGAGLDPV 344
           ++P I  A PS+A  P  ++     P  P +P   +   P +  +   P+
Sbjct: 119 SAPPIPGAVPSVAAPPIPNAPLSPAPAVPSIPSSSAPPIPDIPSSAAPPI 168


>sp|Q9NRR4|RNC_HUMAN Ribonuclease 3 OS=Homo sapiens GN=RNASEN PE=1
           SV=2
          Length = 1374

 Score = 35.8 bits (81), Expect = 0.21
 Identities = 22/54 (40%), Positives = 24/54 (44%)
 Frame = +1

Query: 118 LPPSASPCLWPPWLNLPFSPAPQRSLPPSPISRQAPVLQRRRPAASPSLPCIPP 279
           LPP      +PP    P  P+ Q  LPP PI    P  Q R P   P  PC PP
Sbjct: 72  LPPRPDFVPFPP----PMPPSAQGPLPPCPIRPPFPNHQMRHPFPVP--PCFPP 119


>sp|O43365|HXA3_HUMAN Homeobox protein Hox-A3 OS=Homo sapiens
           GN=HOXA3 PE=2 SV=1
          Length = 443

 Score = 35.8 bits (81), Expect = 0.21
 Identities = 22/65 (33%), Positives = 31/65 (47%)
 Frame = +1

Query: 82  HTYARAHTQTRALPPSASPCLWPPWLNLPFSPAPQRSLPPSPISRQAPVLQRRRPAASPS 261
           H  + A  +T + PPS  P L  P    P  P P ++ PP+P   Q P    + PA +P+
Sbjct: 65  HELSEACLRTLSAPPSQPPSLGEP----PLHPPPPQAAPPAP---QPPQPAPQPPAPTPA 117

Query: 262 LPCIP 276
            P  P
Sbjct: 118 APPPP 122


>sp|P48367|YCF17_CYAPA Uncharacterized protein ycf17 OS=Cyanophora
           paradoxa GN=ycf17 PE=3 SV=1
          Length = 49

 Score = 35.4 bits (80), Expect = 0.27
 Identities = 15/23 (65%), Positives = 21/23 (91%)
 Frame = +3

Query: 447 GRVAMLGFAASILGEAITGKGTL 515
           GR+AMLGF A++L E++TG+GTL
Sbjct: 21  GRLAMLGFIAALLTESLTGQGTL 43
tr_hit_id B3RFS0
Definition tr|B3RFS0|B3RFS0_SOLNI Chloroplast chlorophyll a/b-binding protein (Fragment) OS=Solanum nigrum
Align length 94
Score (bit) 92.4
E-value 2.0e-17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949403|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0005_O10, 5'
         (664 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3RFS0|B3RFS0_SOLNI Chloroplast chlorophyll a/b-binding prote...    92   2e-17
tr|Q2LAH0|Q2LAH0_NICBE Chloroplast photosystem II 22 kDa compone...    91   8e-17
tr|Q2LAH1|Q2LAH1_NICBE Chloroplast photosystem II 22 kDa compone...    87   7e-16
tr|B7FJ53|B7FJ53_MEDTR Putative uncharacterized protein (Fragmen...    85   3e-15
tr|A9TJ15|A9TJ15_PHYPA Photosystem II 22kDa chloroplast protein ...    85   3e-15
tr|A9NK12|A9NK12_PICSI Putative uncharacterized protein OS=Picea...    81   7e-15
tr|A4L9I5|A4L9I5_GOSHI Putative photosystem II protein OS=Gossyp...    84   8e-15
tr|A4L9G7|A4L9G7_GOSRA Putative photosystem II protein OS=Gossyp...    84   8e-15
tr|Q94EI1|Q94EI1_ARATH Putative uncharacterized protein (At1g445...    83   1e-14
tr|Q56XH2|Q56XH2_ARATH Photosystem II chlorophyll-binding protei...    83   1e-14
tr|Q3ECX1|Q3ECX1_ARATH Uncharacterized protein At1g44575.2 OS=Ar...    83   1e-14
tr|B2ZAP6|B2ZAP6_9ROSI Putative photosystem II protein OS=Gossyp...    82   2e-14
tr|Q943K1|Q943K1_ORYSJ cDNA clone:001-002-B11, full insert seque...    82   3e-14
tr|A2WXD9|A2WXD9_ORYSI Putative uncharacterized protein OS=Oryza...    82   3e-14
tr|Q1EMP1|Q1EMP1_PLAMJ Photosystem II, 22 kDa Protein OS=Plantag...    82   4e-14
tr|A9PIG1|A9PIG1_POPTR Putative uncharacterized protein OS=Popul...    80   9e-14
tr|A7NVD7|A7NVD7_VITVI Chromosome chr18 scaffold_1, whole genome...    80   9e-14
tr|Q6WFB1|Q6WFB1_MAIZE Photosystem II subunit PsbS OS=Zea mays P...    79   2e-13
tr|B6TKD1|B6TKD1_MAIZE Photosystem II 22 kDa protein OS=Zea mays...    79   2e-13
tr|A9NYQ2|A9NYQ2_PICSI Putative uncharacterized protein OS=Picea...    79   2e-13
tr|Q7XSS8|Q7XSS8_ORYSJ OSJNBa0039K24.28 protein (Putative unchar...    78   4e-13
tr|Q40716|Q40716_ORYSJ 22 kDa protein of photosystem II OS=Oryza...    78   4e-13
tr|Q259V3|Q259V3_ORYSA B0518A01.1 protein (H0814G11.22 protein) ...    78   4e-13
tr|Q0J8R9|Q0J8R9_ORYSJ Os04g0690800 protein OS=Oryza sativa subs...    78   4e-13
tr|A2XZ94|A2XZ94_ORYSI Putative uncharacterized protein OS=Oryza...    78   4e-13
tr|Q2VL34|Q2VL34_9LILI PSII subunit PsbS (Fragment) OS=Xerophyta...    77   7e-13
tr|A8HPM5|A8HPM5_CHLRE Chloroplast photosystem II-associated 22 ...    58   6e-07
tr|A8HPM2|A8HPM2_CHLRE Chloroplast photosystem II-associated 22 ...    58   6e-07
tr|A4QPL3|A4QPL3_ACEAT Chloroplast photosystem II 22 kDa PsbS pr...    57   1e-06
tr|A4QPL4|A4QPL4_ACEAT Chloroplast photosystem II 22 kDa PsbS pr...    57   1e-06

>tr|B3RFS0|B3RFS0_SOLNI Chloroplast chlorophyll a/b-binding protein
           (Fragment) OS=Solanum nigrum GN=PsbS PE=4 SV=1
          Length = 268

 Score = 92.4 bits (228), Expect = 2e-17
 Identities = 52/94 (55%), Positives = 55/94 (58%)
 Frame = +3

Query: 381 VEDXXXXXXXXXXXXKQNELFVGRVAMLGFAASILGEAITGKGTLAQFDXXXXXXXXXXX 560
           VED            KQNELFVGRVAM+GFAAS+LGEAITGKG LAQ +           
Sbjct: 82  VEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAE 141

Query: 561 XXXXXXXXXXXXXAIGALGDRGKFVDDPAEPTGL 662
                        AIGALGDRGKFVDDPA PTGL
Sbjct: 142 PLLLFFILFNLLGAIGALGDRGKFVDDPAPPTGL 175



 Score = 49.7 bits (117), Expect = 2e-04
 Identities = 24/34 (70%), Positives = 27/34 (79%)
 Frame = +3

Query: 426 KQNELFVGRVAMLGFAASILGEAITGKGTLAQFD 527
           K NELFVGR+A LG A SI+GE ITGKG LAQ +
Sbjct: 203 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLN 236


>tr|Q2LAH0|Q2LAH0_NICBE Chloroplast photosystem II 22 kDa component
           OS=Nicotiana benthamiana GN=psbS1 PE=2 SV=1
          Length = 277

 Score = 90.5 bits (223), Expect = 8e-17
 Identities = 50/94 (53%), Positives = 54/94 (57%)
 Frame = +3

Query: 381 VEDXXXXXXXXXXXXKQNELFVGRVAMLGFAASILGEAITGKGTLAQFDXXXXXXXXXXX 560
           VED            KQNELFVGRVAM+GFAAS+LGEAITGKG LAQ +           
Sbjct: 83  VEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAE 142

Query: 561 XXXXXXXXXXXXXAIGALGDRGKFVDDPAEPTGL 662
                        AIGALGDRGKF+DDP  PTGL
Sbjct: 143 PLLLFFILFNLLGAIGALGDRGKFIDDPTPPTGL 176



 Score = 49.7 bits (117), Expect = 2e-04
 Identities = 24/34 (70%), Positives = 27/34 (79%)
 Frame = +3

Query: 426 KQNELFVGRVAMLGFAASILGEAITGKGTLAQFD 527
           K NELFVGR+A LG A SI+GE ITGKG LAQ +
Sbjct: 204 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLN 237


>tr|Q2LAH1|Q2LAH1_NICBE Chloroplast photosystem II 22 kDa component
           OS=Nicotiana benthamiana GN=psbS2 PE=4 SV=1
          Length = 274

 Score = 87.4 bits (215), Expect = 7e-16
 Identities = 49/94 (52%), Positives = 53/94 (56%)
 Frame = +3

Query: 381 VEDXXXXXXXXXXXXKQNELFVGRVAMLGFAASILGEAITGKGTLAQFDXXXXXXXXXXX 560
           VED            KQNELFVGRVAM+GFAAS+LGEAITGKG LAQ +           
Sbjct: 80  VEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAE 139

Query: 561 XXXXXXXXXXXXXAIGALGDRGKFVDDPAEPTGL 662
                        AIGALGDRGKF+DDP   TGL
Sbjct: 140 PLLLFFILFNLLGAIGALGDRGKFIDDPVPATGL 173



 Score = 49.7 bits (117), Expect = 2e-04
 Identities = 24/34 (70%), Positives = 27/34 (79%)
 Frame = +3

Query: 426 KQNELFVGRVAMLGFAASILGEAITGKGTLAQFD 527
           K NELFVGR+A LG A SI+GE ITGKG LAQ +
Sbjct: 201 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLN 234


>tr|B7FJ53|B7FJ53_MEDTR Putative uncharacterized protein (Fragment)
           OS=Medicago truncatula PE=2 SV=1
          Length = 262

 Score = 85.1 bits (209), Expect = 3e-15
 Identities = 59/138 (42%), Positives = 66/138 (47%), Gaps = 1/138 (0%)
 Frame = +3

Query: 252 LSFAPLHS-SRVFQSSPLKTVALFXXXXXXXXXXXXXXXXXXXXVEDXXXXXXXXXXXXK 428
           +SF PL S S+ F S    T+ALF                    VED            K
Sbjct: 39  VSFNPLPSNSKCFSSRTFTTLALFKSKTKAPAKVVKKPKPK---VEDGIFGTSRGFGFTK 95

Query: 429 QNELFVGRVAMLGFAASILGEAITGKGTLAQFDXXXXXXXXXXXXXXXXXXXXXXXXAIG 608
           QNELFVGRVAM+GFAASILGEA+TGKG LAQ +                        AIG
Sbjct: 96  QNELFVGRVAMIGFAASILGEALTGKGILAQLNLETGIPIYEAEPLLLFFIIFTLLGAIG 155

Query: 609 ALGDRGKFVDDPAEPTGL 662
           ALGDRGKFVDD     G+
Sbjct: 156 ALGDRGKFVDDEPNTGGV 173



 Score = 50.1 bits (118), Expect = 1e-04
 Identities = 23/34 (67%), Positives = 27/34 (79%)
 Frame = +3

Query: 426 KQNELFVGRVAMLGFAASILGEAITGKGTLAQFD 527
           K NELFVGR+A LGF  S++GE ITGKG LAQ +
Sbjct: 197 KSNELFVGRLAQLGFVFSLIGEIITGKGALAQLN 230


>tr|A9TJ15|A9TJ15_PHYPA Photosystem II 22kDa chloroplast protein
           OS=Physcomitrella patens subsp. patens GN=PSBS PE=4 SV=1
          Length = 279

 Score = 85.1 bits (209), Expect = 3e-15
 Identities = 49/87 (56%), Positives = 50/87 (57%)
 Frame = +3

Query: 381 VEDXXXXXXXXXXXXKQNELFVGRVAMLGFAASILGEAITGKGTLAQFDXXXXXXXXXXX 560
           VED            K NELFVGRVAMLGFAASILGEA+TGKGTLAQFD           
Sbjct: 85  VEDGIFGTSGGIGFTKANELFVGRVAMLGFAASILGEALTGKGTLAQFDIETGIPLTETE 144

Query: 561 XXXXXXXXXXXXXAIGALGDRGKFVDD 641
                        AIGALGDRGKFVDD
Sbjct: 145 PLLLFFILFTLLGAIGALGDRGKFVDD 171



 Score = 48.9 bits (115), Expect = 3e-04
 Identities = 23/34 (67%), Positives = 27/34 (79%)
 Frame = +3

Query: 426 KQNELFVGRVAMLGFAASILGEAITGKGTLAQFD 527
           K NELFVGR+A LG A +I+GE ITGKG LAQ +
Sbjct: 205 KSNELFVGRLAQLGIAFAIIGEIITGKGALAQLN 238


>tr|A9NK12|A9NK12_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 297

 Score = 81.3 bits (199), Expect(2) = 7e-15
 Identities = 47/94 (50%), Positives = 51/94 (54%)
 Frame = +3

Query: 381 VEDXXXXXXXXXXXXKQNELFVGRVAMLGFAASILGEAITGKGTLAQFDXXXXXXXXXXX 560
           VED            K NELFVGRVAM+GFAAS+LGEAITGKG L+Q +           
Sbjct: 102 VEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEAITGKGILSQLNLETGIPIYEAE 161

Query: 561 XXXXXXXXXXXXXAIGALGDRGKFVDDPAEPTGL 662
                        AIGALGDRGKFVDD    TGL
Sbjct: 162 PLLLFFILFTLLGAIGALGDRGKFVDDQTPTTGL 195



 Score = 23.5 bits (49), Expect(2) = 7e-15
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +1

Query: 112 RALPPSASPCLWPPWLNLPFSPAPQRSLPPSPISRQAPVLQRRRPAASP 258
           R  PP+A+   W P   LP + A   +   + I+R   + + +  AA+P
Sbjct: 39  RIRPPNAAQISWSPLTELPSANAAGLN---ARIARTEALFRPKEKAAAP 84



 Score = 50.1 bits (118), Expect = 1e-04
 Identities = 24/34 (70%), Positives = 27/34 (79%)
 Frame = +3

Query: 426 KQNELFVGRVAMLGFAASILGEAITGKGTLAQFD 527
           K NELFVGR+A LG A SI+GE ITGKG LAQ +
Sbjct: 223 KSNELFVGRLAQLGIAFSIIGEIITGKGALAQLN 256


>tr|A4L9I5|A4L9I5_GOSHI Putative photosystem II protein OS=Gossypium
           hirsutum PE=4 SV=1
          Length = 278

 Score = 84.0 bits (206), Expect = 8e-15
 Identities = 49/94 (52%), Positives = 54/94 (57%)
 Frame = +3

Query: 381 VEDXXXXXXXXXXXXKQNELFVGRVAMLGFAASILGEAITGKGTLAQFDXXXXXXXXXXX 560
           VED            KQNELFVGRVAM+GFAAS+LGEAITGKG LAQ +           
Sbjct: 85  VEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAE 144

Query: 561 XXXXXXXXXXXXXAIGALGDRGKFVDDPAEPTGL 662
                        AIGALGDRGKFVD+P  PTG+
Sbjct: 145 PLLLFFILFTLLGAIGALGDRGKFVDEP--PTGI 176



 Score = 49.7 bits (117), Expect = 2e-04
 Identities = 32/75 (42%), Positives = 36/75 (48%)
 Frame = +3

Query: 426 KQNELFVGRVAMLGFAASILGEAITGKGTLAQFDXXXXXXXXXXXXXXXXXXXXXXXXAI 605
           K NELFVGR+A LG A S++GE ITGKG LAQ +                        AI
Sbjct: 204 KANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPISDIEPLVLFNVAFFFFAAI 263

Query: 606 GALGDRGKFVDDPAE 650
                 GKFV D AE
Sbjct: 264 NP--GTGKFVTDEAE 276


>tr|A4L9G7|A4L9G7_GOSRA Putative photosystem II protein OS=Gossypium
           raimondii PE=4 SV=1
          Length = 278

 Score = 84.0 bits (206), Expect = 8e-15
 Identities = 49/94 (52%), Positives = 54/94 (57%)
 Frame = +3

Query: 381 VEDXXXXXXXXXXXXKQNELFVGRVAMLGFAASILGEAITGKGTLAQFDXXXXXXXXXXX 560
           VED            KQNELFVGRVAM+GFAAS+LGEAITGKG LAQ +           
Sbjct: 85  VEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAE 144

Query: 561 XXXXXXXXXXXXXAIGALGDRGKFVDDPAEPTGL 662
                        AIGALGDRGKFVD+P  PTG+
Sbjct: 145 PLLLFFILFTLLGAIGALGDRGKFVDEP--PTGI 176



 Score = 49.7 bits (117), Expect = 2e-04
 Identities = 32/75 (42%), Positives = 36/75 (48%)
 Frame = +3

Query: 426 KQNELFVGRVAMLGFAASILGEAITGKGTLAQFDXXXXXXXXXXXXXXXXXXXXXXXXAI 605
           K NELFVGR+A LG A S++GE ITGKG LAQ +                        AI
Sbjct: 204 KANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPISDIEPLVLFNVAFFFFAAI 263

Query: 606 GALGDRGKFVDDPAE 650
                 GKFV D AE
Sbjct: 264 NP--GTGKFVTDEAE 276


>tr|Q94EI1|Q94EI1_ARATH Putative uncharacterized protein
           (At1g44575/T18F15) OS=Arabidopsis thaliana PE=2 SV=1
          Length = 265

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 49/94 (52%), Positives = 53/94 (56%)
 Frame = +3

Query: 381 VEDXXXXXXXXXXXXKQNELFVGRVAMLGFAASILGEAITGKGTLAQFDXXXXXXXXXXX 560
           VED            K NELFVGRVAM+GFAAS+LGEA+TGKG LAQ +           
Sbjct: 72  VEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIPIYEAE 131

Query: 561 XXXXXXXXXXXXXAIGALGDRGKFVDDPAEPTGL 662
                        AIGALGDRGKFVDDP  PTGL
Sbjct: 132 PLLLFFILFTLLGAIGALGDRGKFVDDP--PTGL 163



 Score = 48.9 bits (115), Expect = 3e-04
 Identities = 23/34 (67%), Positives = 27/34 (79%)
 Frame = +3

Query: 426 KQNELFVGRVAMLGFAASILGEAITGKGTLAQFD 527
           K NELFVGR+A LG A S++GE ITGKG LAQ +
Sbjct: 191 KANELFVGRLAQLGIAFSLIGEIITGKGALAQLN 224


>tr|Q56XH2|Q56XH2_ARATH Photosystem II chlorophyll-binding protein
           PsbS OS=Arabidopsis thaliana GN=At1g44575 PE=2 SV=1
          Length = 265

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 49/94 (52%), Positives = 53/94 (56%)
 Frame = +3

Query: 381 VEDXXXXXXXXXXXXKQNELFVGRVAMLGFAASILGEAITGKGTLAQFDXXXXXXXXXXX 560
           VED            K NELFVGRVAM+GFAAS+LGEA+TGKG LAQ +           
Sbjct: 72  VEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIPIYEAE 131

Query: 561 XXXXXXXXXXXXXAIGALGDRGKFVDDPAEPTGL 662
                        AIGALGDRGKFVDDP  PTGL
Sbjct: 132 PLLLFFILFTLLGAIGALGDRGKFVDDP--PTGL 163



 Score = 48.9 bits (115), Expect = 3e-04
 Identities = 23/34 (67%), Positives = 27/34 (79%)
 Frame = +3

Query: 426 KQNELFVGRVAMLGFAASILGEAITGKGTLAQFD 527
           K NELFVGR+A LG A S++GE ITGKG LAQ +
Sbjct: 191 KANELFVGRLAQLGIAFSLIGEIITGKGALAQLN 224