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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK949339
Clone id TST38A01NGRL0005_L17
Library
Length 684
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0005_L17. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
AAAACAAGTCCCTCCCACCGCCTCTCAACTTCCCTTGCGATTCATATTTCGAGGTCGCCA
TGGCCCCCGCTGCGCAGAAGAAAGGAAAGAAGCCTGCCGCCGCTGCTGTCAAGAAGGATT
CCCCTGCTCCTAAGAAGCAGCCGCAGGTCGAGCAGGAGGAAGTCTTCATGAAAGAGGCGG
AAGAGCAAAAGCCAGACGATGCCGCTGCTACTCAAGAAGCATCTGAAGCTGCTTCTTCCG
CCCCCGATGATGCGGGCAAAGATGCAGTTGCAGAAGCAGCGTCCAAGGACGAGGAAACCC
CCTCAGTCGAGCTTGACACCTCTAAGGCCGAGGACCAGGTGGCTATTGTGGAAGAAGTCA
AACCTGACCAGGAGGAGGCTGCTGCAGACGATTTGGAAGGAGACGAAACAGGAGATGTTG
ATGAAGAAGTTGAGGAAGTTGAAGAAGTGGATGAGGAAGAAGATGCGGAAGGTGTGGAAA
ATGGTAGTGGAGATAGATCTGCCAACAAAGATATTGCAATGCAGAATGGTGATGATGGGG
CTGCTGGGCATCCAGAAGGGGAGGGCAGTGATGGTGAGGGTAATGCAGCAGCAGATGATG
TATTAAAGAGTGTGCCAGATGACAATTTTGGTCCTTCCAGTGGCAAGATTTTTATTGGTG
GATTGTCAAGAGAGACCACTACAG
■■Homology search results ■■ -
sp_hit_id Q62598
Definition sp|Q62598|DSPP_RAT Dentin sialophosphoprotein OS=Rattus norvegicus
Align length 60
Score (bit) 33.9
E-value 0.83
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949339|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0005_L17, 5'
         (684 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q62598|DSPP_RAT Dentin sialophosphoprotein OS=Rattus norvegic...    34   0.83 
sp|P56183|RRP1_MOUSE Ribosomal RNA processing protein 1 homolog ...    33   1.4  
sp|P34804|COL40_CAEEL Cuticle collagen 40 OS=Caenorhabditis eleg...    32   3.1  
sp|Q08473|SQD_DROME RNA-binding protein squid OS=Drosophila mela...    31   5.4  
sp|P08723|SPBP_RAT Prostatic spermine-binding protein OS=Rattus ...    31   7.0  
sp|Q2UBW0|HIR3_ASPOR Histone transcription regulator 3 homolog O...    31   7.0  
sp|O16883|CPG4_CAEEL Chondroitin proteoglycan 4 OS=Caenorhabditi...    30   9.1  

>sp|Q62598|DSPP_RAT Dentin sialophosphoprotein OS=Rattus norvegicus
           GN=Dspp PE=1 SV=2
          Length = 687

 Score = 33.9 bits (76), Expect = 0.83
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = +3

Query: 480 NGS-GDRSANKDIAMQNGDDGAAGHPEGE----GSDGEGNAAADDVLKSVPDDNFGPSSG 644
           NGS G   AN + A++NG+ G A +   E    GSD + +A  DD      D +   S+G
Sbjct: 457 NGSDGSDDANSESAIENGNHGDASYTSDESSDNGSDSDSHAGEDDSSDDTSDTDDSDSNG 516


>sp|P56183|RRP1_MOUSE Ribosomal RNA processing protein 1 homolog A
           OS=Mus musculus GN=Rrp1 PE=2 SV=2
          Length = 494

 Score = 33.1 bits (74), Expect = 1.4
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +3

Query: 480 NGSGDRSANKDIAMQNGDDG-AAGHPEGEGSD-GEGNAAADDVLKSVPDDNFGPSSG 644
           +G G+ S   D    +GDDG A+   +GE SD G+G+ A  D      DD+   S G
Sbjct: 240 SGEGEASDGDDGEASDGDDGEASDDDDGEASDGGDGDVADSDDSDGADDDDGDVSDG 296


>sp|P34804|COL40_CAEEL Cuticle collagen 40 OS=Caenorhabditis elegans
           GN=col-40 PE=2 SV=2
          Length = 306

 Score = 32.0 bits (71), Expect = 3.1
 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +3

Query: 528 GDDGAAGHPEGEGSDGEGNAA--ADDVLKSVPDDNFGPSSG 644
           G+DG AG+P   GSD E  AA  A D     P    GP+ G
Sbjct: 133 GEDGKAGNPGTAGSDAEAAAAPTASDFCFDCPPGPAGPAGG 173


>sp|Q08473|SQD_DROME RNA-binding protein squid OS=Drosophila
           melanogaster GN=sqd PE=1 SV=3
          Length = 344

 Score = 31.2 bits (69), Expect = 5.4
 Identities = 20/53 (37%), Positives = 25/53 (47%)
 Frame = +3

Query: 522 QNGDDGAAGHPEGEGSDGEGNAAADDVLKSVPDDNFGPSSGKIFIGGLSRETT 680
           +NGD GAAG   G   +    +   D      DD       K+F+GGLS ETT
Sbjct: 28  ENGDAGAAGSTNGSSDNQSAASGQRD------DDR------KLFVGGLSWETT 68


>sp|P08723|SPBP_RAT Prostatic spermine-binding protein OS=Rattus
           norvegicus GN=Sbp PE=1 SV=1
          Length = 279

 Score = 30.8 bits (68), Expect = 7.0
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +3

Query: 483 GSGDRSANKDIAMQNGDDGAAGHPEGEGSDGEGNAAADD 599
           GSGD   N D      DDG +G    +G D E +   DD
Sbjct: 233 GSGDDDDNDDEDDDKDDDGGSGDDGDDGDDDEDDDGGDD 271


>sp|Q2UBW0|HIR3_ASPOR Histone transcription regulator 3 homolog
            OS=Aspergillus oryzae GN=hir3 PE=3 SV=1
          Length = 2059

 Score = 30.8 bits (68), Expect = 7.0
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 489  GDRSANKDIAMQNGDDGAAGHPEGEGSDGEGNAAADD 599
            GD  A+ D A  +G+    G  EGEG D E N AA +
Sbjct: 1971 GDDGADGDEAEIDGEGEGEGEGEGEGEDEEDNEAAGE 2007


>sp|O16883|CPG4_CAEEL Chondroitin proteoglycan 4 OS=Caenorhabditis
           elegans GN=cpg-4 PE=1 SV=3
          Length = 782

 Score = 30.4 bits (67), Expect = 9.1
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +3

Query: 486 SGDRSANKDIAMQNGDDGAAGHPEGEGSDGEGNAAADDVLKSVPDDNFGPSSGK 647
           SGD S + + +  +G+    G   G    G GN    +V++S  D  F  SS +
Sbjct: 691 SGDNSGDFNSSGSSGEASGVGESSGSEDQGSGNYKKIEVIESSGDYEFSGSSNE 744
tr_hit_id A0NEX1
Definition tr|A0NEX1|A0NEX1_ANOGA AGAP006668-PA OS=Anopheles gambiae
Align length 67
Score (bit) 38.1
E-value 0.53
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949339|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0005_L17, 5'
         (684 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A0NEX1|A0NEX1_ANOGA AGAP006668-PA OS=Anopheles gambiae GN=AGA...    38   0.53 
tr|Q8MPK1|Q8MPK1_PLAVI Circumsporozoite protein (Fragment) OS=Pl...    37   0.90 
tr|A7J1G8|A7J1G8_PLAVI Circumsporozoite protein (Fragment) OS=Pl...    37   1.2  
tr|A7PM30|A7PM30_VITVI Chromosome chr14 scaffold_21, whole genom...    36   2.0  
tr|A9B2K6|A9B2K6_HERA2 AAA ATPase containing von Willebrand fact...    35   3.4  
tr|Q6YVH4|Q6YVH4_ORYSJ Putative heterogeneous nuclearribonucleop...    35   3.4  
tr|Q6YVH3|Q6YVH3_ORYSJ Os02g0221500 protein OS=Oryza sativa subs...    35   3.4  
tr|A2YE63|A2YE63_ORYSI Putative uncharacterized protein OS=Oryza...    35   4.5  
tr|A2X2I9|A2X2I9_ORYSI Putative uncharacterized protein OS=Oryza...    35   4.5  
tr|B6TGB9|B6TGB9_MAIZE Heterogeneous nuclear ribonucleoprotein A...    35   5.8  
tr|Q2K9F8|Q2K9F8_RHIEC Hypothetical conserved protein OS=Rhizobi...    34   7.6  
tr|Q9GQP0|Q9GQP0_PLAVI Circumsporozoite protein (Fragment) OS=Pl...    34   7.6  
tr|Q9GQL9|Q9GQL9_PLAVI Circumsporozoite protein (Fragment) OS=Pl...    34   7.6  
tr|Q9GQL8|Q9GQL8_PLAVI Circumsporozoite protein (Fragment) OS=Pl...    34   7.6  
tr|Q9BPK8|Q9BPK8_PLAVI Circumsporozoite protein (Fragment) OS=Pl...    34   7.6  
tr|Q9BPK6|Q9BPK6_PLAVI Circumsporozoite protein (Fragment) OS=Pl...    34   7.6  
tr|Q9BH54|Q9BH54_PLAVI Circumsporozoite protein (Fragment) OS=Pl...    34   7.6  
tr|Q8MPK3|Q8MPK3_PLAVI Circumsporozoite protein (Fragment) OS=Pl...    34   7.6  
tr|Q8MPK2|Q8MPK2_PLAVI Circumsporozoite protein (Fragment) OS=Pl...    34   7.6  
tr|Q8MPK0|Q8MPK0_PLAVI Circumsporozoite (Fragment) OS=Plasmodium...    34   7.6  
tr|Q8ISA8|Q8ISA8_PLAVI Circumsporozoite protein (Fragment) OS=Pl...    34   7.6  
tr|Q3Y5X1|Q3Y5X1_PLAVI Circumsporozoite protein (Fragment) OS=Pl...    34   7.6  
tr|Q26116|Q26116_PLAVI Circumsporozoite protein (Fragment) OS=Pl...    34   7.6  
tr|O96443|O96443_PLAVI Circumsporozoite protein (Fragment) OS=Pl...    34   7.6  
tr|A7J1J5|A7J1J5_PLAVI Circumsporozoite protein (Fragment) OS=Pl...    34   7.6  
tr|A7J1H5|A7J1H5_PLAVI Circumsporozoite protein (Fragment) OS=Pl...    34   7.6  
tr|A7J1G4|A7J1G4_PLAVI Circumsporozoite protein (Fragment) OS=Pl...    34   7.6  
tr|Q5UX77|Q5UX77_HALMA Putative uncharacterized protein OS=Haloa...    34   7.6  
tr|Q8VBY1|Q8VBY1_RAT Dentin sialoprotein-phosphophoryn OS=Rattus...    34   9.9  
tr|B6UB95|B6UB95_MAIZE Glycine-rich RNA-binding protein 7 OS=Zea...    34   9.9  

>tr|A0NEX1|A0NEX1_ANOGA AGAP006668-PA OS=Anopheles gambiae
           GN=AGAP006668 PE=4 SV=2
          Length = 360

 Score = 38.1 bits (87), Expect = 0.53
 Identities = 22/67 (32%), Positives = 29/67 (43%)
 Frame = +3

Query: 480 NGSGDRSANKDIAMQNGDDGAAGHPEGEGSDGEGNAAADDVLKSVPDDNFGPSSGKIFIG 659
           NG     +  +++  NG  G  G   G G  G G     D   +  DD       K+F+G
Sbjct: 19  NGQNQMDSEDNMSGNNGASGGNGGGGGGGGGGGGGGGGSDSQSNARDD-----ERKLFVG 73

Query: 660 GLSRETT 680
           GLS ETT
Sbjct: 74  GLSWETT 80


>tr|Q8MPK1|Q8MPK1_PLAVI Circumsporozoite protein (Fragment)
           OS=Plasmodium vivax GN=CSP PE=4 SV=1
          Length = 368

 Score = 37.4 bits (85), Expect = 0.90
 Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +3

Query: 480 NGSGDRSANKDIAMQNGDDGAAGHPEGEGSDGE--GNAA 590
           NG+G + A    A Q   DGAAG P G+G+DG+  GN A
Sbjct: 81  NGAGGQPAGDRAAGQPAGDGAAGQPAGDGADGQAAGNGA 119


>tr|A7J1G8|A7J1G8_PLAVI Circumsporozoite protein (Fragment)
           OS=Plasmodium vivax GN=CSP PE=4 SV=1
          Length = 363

 Score = 37.0 bits (84), Expect = 1.2
 Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +3

Query: 480 NGSGDRSANKDIAMQNGDDGAAGHPEGEGSDGE--GNAA 590
           NG+G + A    A Q  DDGAAG P G+ +DG+  GN A
Sbjct: 81  NGAGGQPAGDRAAGQPADDGAAGQPAGDRADGQAAGNGA 119


>tr|A7PM30|A7PM30_VITVI Chromosome chr14 scaffold_21, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00020662001
           PE=4 SV=1
          Length = 376

 Score = 36.2 bits (82), Expect = 2.0
 Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +3

Query: 555 EGEGSDGEGNAAADDV-LKSVPDDNFGPSSGKIFIGGLSRETTT 683
           +GE +D + +   DD   K  P    G S GKIFIGGL+RETT+
Sbjct: 11  DGETNDVKSSHHTDDNDSKPHPHTGDGASPGKIFIGGLARETTS 54


>tr|A9B2K6|A9B2K6_HERA2 AAA ATPase containing von Willebrand factor
           type A (VWA) protein-like omain OS=Herpetosiphon
           aurantiacus (strain ATCC 23779 / DSM 785) GN=Haur_2819
           PE=3 SV=1
          Length = 1394

 Score = 35.4 bits (80), Expect = 3.4
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +3

Query: 528 GDDGAAGHPEGEGSDGEGNAAADDVLKSVPDDNFGPSSG 644
           GDDGAAG P+G+GS+     AA         DN G + G
Sbjct: 530 GDDGAAGDPDGDGSNNAAEFAAGTNPNDADSDNDGLNDG 568


>tr|Q6YVH4|Q6YVH4_ORYSJ Putative heterogeneous
           nuclearribonucleoprotein A2 OS=Oryza sativa subsp.
           japonica GN=P0758B01.1-2 PE=4 SV=1
          Length = 374

 Score = 35.4 bits (80), Expect = 3.4
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = +3

Query: 531 DDGAAGHPEGEGSDGEGNAAADDVLKSVPDDNFGPSSGKIFIGGLSRETT 680
           ++G  G   G G DG    A  D          G SSGKIF+GG++ ETT
Sbjct: 29  EEGRPGRRGGGGRDGGDGGAYGDASGDDGRAPGGDSSGKIFVGGVAWETT 78


>tr|Q6YVH3|Q6YVH3_ORYSJ Os02g0221500 protein OS=Oryza sativa subsp.
           japonica GN=P0758B01.1-1 PE=4 SV=1
          Length = 397

 Score = 35.4 bits (80), Expect = 3.4
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = +3

Query: 531 DDGAAGHPEGEGSDGEGNAAADDVLKSVPDDNFGPSSGKIFIGGLSRETT 680
           ++G  G   G G DG    A  D          G SSGKIF+GG++ ETT
Sbjct: 29  EEGRPGRRGGGGRDGGDGGAYGDASGDDGRAPGGDSSGKIFVGGVAWETT 78


>tr|A2YE63|A2YE63_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_23407 PE=4 SV=1
          Length = 407

 Score = 35.0 bits (79), Expect = 4.5
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +3

Query: 492 DRSANKDIAMQNGDDGAAGHPEGEGSDGEGNAAADDVLKSVPDDNFGPSSGKIFIGGLSR 671
           +  A+   A  +  +  A    G G + EG    ++  ++      G SSGKIF+GG++ 
Sbjct: 41  EEGADATAAAADAAEEVAEERRGGGGEVEGVGNGEEAGRTAGGGEGGDSSGKIFVGGVAW 100

Query: 672 ETT 680
           ETT
Sbjct: 101 ETT 103


>tr|A2X2I9|A2X2I9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_06408 PE=4 SV=1
          Length = 504

 Score = 35.0 bits (79), Expect = 4.5
 Identities = 23/51 (45%), Positives = 28/51 (54%)
 Frame = +3

Query: 528 GDDGAAGHPEGEGSDGEGNAAADDVLKSVPDDNFGPSSGKIFIGGLSRETT 680
           G  G  G   G+G  G G+A  DD     P    G SSGKIF+GG++ ETT
Sbjct: 143 GRRGGGGRDGGDGG-GYGDAGGDD--GRAPG---GDSSGKIFVGGVAWETT 187


>tr|B6TGB9|B6TGB9_MAIZE Heterogeneous nuclear ribonucleoprotein A3
           OS=Zea mays PE=2 SV=1
          Length = 384

 Score = 34.7 bits (78), Expect = 5.8
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = +3

Query: 528 GDDGAAGHPEGEGSDGEGNAAADDVLKSVPDDNFGPSSGKIFIGGLSRETT 680
           G DG +G+ +  G DG G                G S GKIF+GG++ ETT
Sbjct: 31  GRDGGSGYADAVGEDGRGAG--------------GDSLGKIFVGGVAWETT 67