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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK949306
Clone id TST38A01NGRL0005_K05
Library
Length 644
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0005_K05. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GGGGATGAAGCATTATTCAAGGCGTATGTTACTTCTTTCTGCAGCGAAGCTCGACACGGA
GTCGTGTTCAAGCTAATGCTGCTGTTTTGATCGGAACATGGCCGCATCAGGTGGGTCGGC
CTCTCCACGCAAGCCTTGGGAAGGTGCACGGAGTGCATCATTGGGCCCTTCTCCTTTTCG
ACCGGCCTCCGAGAGCAGCAACACGGCAGTGGTTGTGGAATCGGCTGGAGTTGCTGATTC
CAATGACAATAAGAATACGATCTTGAATCCAACGCAGAATGGAGCTATTGTTGGCAGACC
TCCCATGCCAGTCCGAAGCTATGGTGGCCAAGGATATAATTACAATCAATATAATAATTC
TTATGGAACGAATCCATCATATGCTGGCACTTACAACAGCTACAATAGAATGGGTGGTGG
TATGTATGGAAGTGGCTACGGGGTCGGCAGCTCTTATAATGGAGGGATGTATGGCAGCAG
TTACGGAAGTGGCATGTATGGAAACGGCATGTATGGAAGTGGCATGAGTGGTTATGGTAT
GGGCATGGGGGGTATGGGTATGGGCATGGGTATGGGGCCAATGGGCATGGGTGGTCAAGG
GCCATCTCCGAATGGATTGGGGGATCCGAACAATCCCTATGATG
■■Homology search results ■■ -
sp_hit_id Q9E7N7
Definition sp|Q9E7N7|VP4A_LNYV Phosphoprotein OS=Lettuce necrotic yellows virus
Align length 67
Score (bit) 33.5
E-value 0.97
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949306|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0005_K05, 5'
         (644 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9E7N7|VP4A_LNYV Phosphoprotein OS=Lettuce necrotic yellows v...    33   0.97 
sp|Q9AWA5|GWD1_SOLTU Alpha-glucan water dikinase, chloroplastic ...    32   3.7  
sp|Q4KKX4|NCOR1_XENTR Nuclear receptor corepressor 1 OS=Xenopus ...    31   4.8  
sp|P49687|NU145_YEAST Nucleoporin NUP145 OS=Saccharomyces cerevi...    30   8.2  
sp|Q10571|MN1_HUMAN Probable tumor suppressor protein MN1 OS=Hom...    30   8.2  

>sp|Q9E7N7|VP4A_LNYV Phosphoprotein OS=Lettuce necrotic yellows
           virus GN=P PE=2 SV=1
          Length = 300

 Score = 33.5 bits (75), Expect = 0.97
 Identities = 20/67 (29%), Positives = 36/67 (53%)
 Frame = +3

Query: 291 LADLPCQSEAMVAKDIITINIIILMERIHHMLALTTATIEWVVVCMEVATGSAALIMEGC 470
           L +L  +S+ +V  D++    I L    HH L L  ++++W V  +  A  S  +IME  
Sbjct: 66  LLELAAKSQGIVVTDVMQNTAIAL----HHNLGLDASSLDWFVAGITFANNS--MIMEKM 119

Query: 471 MAAVTEV 491
           ++A+ E+
Sbjct: 120 VSAIKEL 126


>sp|Q9AWA5|GWD1_SOLTU Alpha-glucan water dikinase, chloroplastic
            OS=Solanum tuberosum GN=R1 PE=1 SV=2
          Length = 1464

 Score = 31.6 bits (70), Expect = 3.7
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = +3

Query: 99   WPHQVGRPLHASLGKVHGVHHWALLLFD----RPPRAATRQWLWNRLELLIPMTIRIRS 263
            W H + +P    LG + GV  WAL +F     R   AA+   L NRL+ ++  T  + S
Sbjct: 949  WYHHLLQPSAEYLGSILGVDQWALNIFTEEIIRAGSAASLSSLLNRLDPVLRKTANLGS 1007


>sp|Q4KKX4|NCOR1_XENTR Nuclear receptor corepressor 1 OS=Xenopus
            tropicalis GN=ncor1 PE=2 SV=1
          Length = 2494

 Score = 31.2 bits (69), Expect = 4.8
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = +2

Query: 167  PSPFRPASESSNTAVVVESAGVADSNDNKNTILNPTQNGAIVGRPPMP 310
            PSP   +S  + +A V  + G + S++ K+T L PTQ   IV + P+P
Sbjct: 1548 PSPMSRSSPMARSAEVGLTPGKSSSHERKST-LTPTQRENIVVKSPVP 1594


>sp|P49687|NU145_YEAST Nucleoporin NUP145 OS=Saccharomyces
           cerevisiae GN=NUP145 PE=1 SV=1
          Length = 1317

 Score = 30.4 bits (67), Expect = 8.2
 Identities = 16/70 (22%), Positives = 31/70 (44%)
 Frame = +2

Query: 95  NMAASGGSASPRKPWEGARSASLGPSPFRPASESSNTAVVVESAGVADSNDNKNTILNPT 274
           N   S  +++P +P    +        F   + ++NT+    S G+ ++N N N+I    
Sbjct: 14  NQNTSTPTSTPAQPSSSLQFPQKSTGLFGNVNVNANTSTPSPSGGLFNANSNANSISQQP 73

Query: 275 QNGAIVGRPP 304
            N ++ G  P
Sbjct: 74  ANNSLFGNKP 83



 Score = 30.4 bits (67), Expect = 8.2
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 188 SESSNTAVVVESAGVADSNDNKNTILNPTQNGAIVGRP 301
           S S+N A   ++ G+   N N N I + TQNG + G+P
Sbjct: 123 SGSNNIASSTQNGGLF-GNSNNNNITSTTQNGGLFGKP 159


>sp|Q10571|MN1_HUMAN Probable tumor suppressor protein MN1 OS=Homo
            sapiens GN=MN1 PE=1 SV=3
          Length = 1320

 Score = 30.4 bits (67), Expect = 8.2
 Identities = 17/58 (29%), Positives = 31/58 (53%)
 Frame = +2

Query: 143  GARSASLGPSPFRPASESSNTAVVVESAGVADSNDNKNTILNPTQNGAIVGRPPMPVR 316
            GA+S S  P+    AS+  +T+   E   V+ S+DN   ++  +++  + G P +P R
Sbjct: 1031 GAKSDSSSPNVGEFASDEVSTSYANEDE-VSSSSDNPQALVKASRSPLVTGSPKLPPR 1087
tr_hit_id A9P0K6
Definition tr|A9P0K6|A9P0K6_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 72
Score (bit) 58.9
E-value 3.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK949306|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0005_K05, 5'
         (644 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9P0K6|A9P0K6_PICSI Putative uncharacterized protein OS=Picea...    59   3e-07
tr|A9SV43|A9SV43_PHYPA Predicted protein OS=Physcomitrella paten...    57   7e-07
tr|A7QYJ3|A7QYJ3_VITVI Chromosome undetermined scaffold_248, who...    49   3e-04
tr|A9NP57|A9NP57_PICSI Putative uncharacterized protein OS=Picea...    45   0.003
tr|A9PBL7|A9PBL7_POPTR Putative uncharacterized protein OS=Popul...    42   0.032
tr|Q9SRR0|Q9SRR0_ARATH F21O3.27 protein (AT3g07560/F21O3_27) OS=...    41   0.055
tr|Q10CE6|Q10CE6_ORYSJ Os03g0786000 protein OS=Oryza sativa subs...    39   0.21 
tr|Q10CE5|Q10CE5_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    39   0.21 
tr|A2XMN3|A2XMN3_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.21 
tr|B7YQ51|B7YQ51_VARPD Transport system permease protein OS=Vari...    39   0.27 
tr|B6TIW3|B6TIW3_MAIZE Glycine-rich protein OS=Zea mays PE=2 SV=1      39   0.27 
tr|B4FI41|B4FI41_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.27 
tr|Q6YT74|Q6YT74_ORYSJ Os07g0152800 protein OS=Oryza sativa subs...    38   0.61 
tr|B8B7C4|B8B7C4_ORYSI Putative uncharacterized protein OS=Oryza...    38   0.61 
tr|B6TGJ0|B6TGJ0_MAIZE Glycine-rich protein OS=Zea mays PE=2 SV=1      38   0.61 
tr|B8A3I2|B8A3I2_MAIZE Putative uncharacterized protein OS=Zea m...    37   1.4  
tr|A4RCN1|A4RCN1_MAGGR Putative uncharacterized protein OS=Magna...    37   1.4  
tr|B1JYC6|B1JYC6_BURCC Response regulator receiver protein OS=Bu...    36   1.8  
tr|Q93YI4|Q93YI4_9BRAS Putative uncharacterized protein OS=Capse...    36   2.3  
tr|Q8S6U2|Q8S6U2_ORYSJ Putative uncharacterized protein OSJNBa00...    35   3.0  
tr|B5FJT4|B5FJT4_SALDC SciS protein OS=Salmonella dublin (strain...    35   3.9  
tr|B4SV61|B4SV61_SALNS Type VI secretion protein IcmF OS=Salmone...    35   3.9  
tr|Q8ZRL2|Q8ZRL2_SALTY Putative inner membrane protein OS=Salmon...    35   5.1  
tr|Q5PFA8|Q5PFA8_SALPA Putative inner membrane protein OS=Salmon...    35   5.1  
tr|Q57SX7|Q57SX7_SALCH Putative inner membrane protein OS=Salmon...    35   5.1  
tr|B5BDU2|B5BDU2_SALPK Putative inner membrane protein OS=Salmon...    35   5.1  
tr|B4TYJ2|B4TYJ2_SALSV Type VI secretion protein IcmF OS=Salmone...    35   5.1  
tr|B4T7L7|B4T7L7_SALHS Type VI secretion protein IcmF OS=Salmone...    35   5.1  
tr|Q93IR7|Q93IR7_SALET SciS protein OS=Salmonella enterica subsp...    35   5.1  
tr|B5PSM5|B5PSM5_SALHA Type VI secretion protein IcmF OS=Salmone...    35   5.1  

>tr|A9P0K6|A9P0K6_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 295

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 37/72 (51%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
 Frame = +2

Query: 104 ASGGSASPRKPWEGARSASLGPSPFRPASESSNTAVVVESAGVADSNDNKNTILN-PTQN 280
           A+ GS  P KPWE   S+S GPSPFRP S  S T+ VVES+GVA   ++ +T  N P  N
Sbjct: 2   AASGSVPPPKPWERVGSSS-GPSPFRPPSTGS-TSNVVESSGVAKIGESSDTERNVPLAN 59

Query: 281 GAIVGRPPMPVR 316
            + +GR PMP R
Sbjct: 60  RSTIGR-PMPAR 70


>tr|A9SV43|A9SV43_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_166717 PE=4 SV=1
          Length = 402

 Score = 57.4 bits (137), Expect = 7e-07
 Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 5/68 (7%)
 Frame = +2

Query: 122 SPRKPWEGA----RSASLGPSPFRPASESSNTAVVVESAGVADSND-NKNTILNPTQNGA 286
           +P KPWE A     SA+ GPSPF P+S +++TA  V SAGV D+   ++N I N  Q GA
Sbjct: 102 APLKPWERAGTQTSSAASGPSPFAPSSNTTSTAATVSSAGVTDAGKLDENGIAN--QTGA 159

Query: 287 IVGRPPMP 310
           + GRP  P
Sbjct: 160 VAGRPNPP 167


>tr|A7QYJ3|A7QYJ3_VITVI Chromosome undetermined scaffold_248, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00009758001 PE=4 SV=1
          Length = 166

 Score = 48.9 bits (115), Expect = 3e-04
 Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
 Frame = +2

Query: 95  NMAASGGSASPRKPWEGARSASLGPSPFRPASESSNTAVVVESAGVAD-----SNDNKNT 259
           N    G +  P KPWE A ++S GP PF+P+S + NT+ VVE++G A+     S  N+NT
Sbjct: 6   NPPQQGANNPPPKPWERAGTSS-GPVPFKPSS-AGNTSDVVEASGTANPGEIGSTTNRNT 63

Query: 260 ILNPTQNGAIVGRPPMPVR 316
           ++N    G      P+P R
Sbjct: 64  VVNRNALGR-----PLPTR 77


>tr|A9NP57|A9NP57_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 289

 Score = 45.4 bits (106), Expect = 0.003
 Identities = 32/70 (45%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
 Frame = +2

Query: 116 SASPRKPWEGARSASLGPSPFRPASESSNTAVVVESAG---VADSNDNKNTILNPTQNGA 286
           S +P KPWE    +S GPSPFR  S  + T  V +S G     + NDN    L P+ NG 
Sbjct: 4   SGAPPKPWERVGGSS-GPSPFRSPSTGNGTNNVGDSCGDTKPEEKNDNIQRNL-PSGNGG 61

Query: 287 IVGRPPMPVR 316
           IV R PMP R
Sbjct: 62  IVAR-PMPQR 70


>tr|A9PBL7|A9PBL7_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 304

 Score = 42.0 bits (97), Expect = 0.032
 Identities = 27/64 (42%), Positives = 37/64 (57%)
 Frame = +2

Query: 125 PRKPWEGARSASLGPSPFRPASESSNTAVVVESAGVADSNDNKNTILNPTQNGAIVGRPP 304
           P KPWE +  +S G +PF+P S  S T+ VVE++G A   +   +  N T N   VGR P
Sbjct: 13  PPKPWEQSGGSS-GATPFKPPSAGS-TSDVVEASGTARPGEIVQSSGNTTNNTNAVGR-P 69

Query: 305 MPVR 316
           +P R
Sbjct: 70  LPAR 73


>tr|Q9SRR0|Q9SRR0_ARATH F21O3.27 protein (AT3g07560/F21O3_27)
           OS=Arabidopsis thaliana GN=At3g07560 PE=2 SV=1
          Length = 304

 Score = 41.2 bits (95), Expect = 0.055
 Identities = 23/50 (46%), Positives = 31/50 (62%)
 Frame = +2

Query: 98  MAASGGSASPRKPWEGARSASLGPSPFRPASESSNTAVVVESAGVADSND 247
           MA+     SP KPWE   + S GP+PFRP S +S TA  VE++G A+  +
Sbjct: 1   MASQPAGGSPPKPWEKEGNTS-GPNPFRPPSNTS-TAGSVEASGTANPGE 48


>tr|Q10CE6|Q10CE6_ORYSJ Os03g0786000 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0786000 PE=2 SV=1
          Length = 270

 Score = 39.3 bits (90), Expect = 0.21
 Identities = 21/41 (51%), Positives = 29/41 (70%)
 Frame = +2

Query: 113 GSASPRKPWEGARSASLGPSPFRPASESSNTAVVVESAGVA 235
           GS  P KPWE A ++S GP+PF+P S  S T+ +VE++G A
Sbjct: 3   GSNPPPKPWERAGTSS-GPAPFKPPSGGS-TSDIVEASGTA 41


>tr|Q10CE5|Q10CE5_ORYSJ Expressed protein OS=Oryza sativa subsp.
           japonica GN=LOC_Os03g57210 PE=4 SV=1
          Length = 190

 Score = 39.3 bits (90), Expect = 0.21
 Identities = 21/41 (51%), Positives = 29/41 (70%)
 Frame = +2

Query: 113 GSASPRKPWEGARSASLGPSPFRPASESSNTAVVVESAGVA 235
           GS  P KPWE A ++S GP+PF+P S  S T+ +VE++G A
Sbjct: 3   GSNPPPKPWERAGTSS-GPAPFKPPSGGS-TSDIVEASGTA 41


>tr|A2XMN3|A2XMN3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_13799 PE=4 SV=1
          Length = 270

 Score = 39.3 bits (90), Expect = 0.21
 Identities = 21/41 (51%), Positives = 29/41 (70%)
 Frame = +2

Query: 113 GSASPRKPWEGARSASLGPSPFRPASESSNTAVVVESAGVA 235
           GS  P KPWE A ++S GP+PF+P S  S T+ +VE++G A
Sbjct: 3   GSNPPPKPWERAGTSS-GPAPFKPPSGGS-TSDIVEASGTA 41


>tr|B7YQ51|B7YQ51_VARPD Transport system permease protein
           OS=Variovorax paradoxus S110 GN=VaparDRAFT_3226 PE=3
           SV=1
          Length = 336

 Score = 38.9 bits (89), Expect = 0.27
 Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 9/138 (6%)
 Frame = +3

Query: 102 PHQVGRPLHASLGKVHGVHHWALLLFDRPPRAATRQWLWNR---------LELLIPMTIR 254
           P+ +G    ASLG        ALLLF     AA+ QW               L + +T+ 
Sbjct: 87  PYLLGSASGASLGVAV-----ALLLFGGS--AASTQWAMRLGLTGAAFVGAVLAVMLTLV 139

Query: 255 IRS*IQRRMELLLADLPCQSEAMVAKDIITINIIILMERIHHMLALTTATIEWVVVCMEV 434
           +   +Q+ + LLLA +        AKD+ITI    +++ I   +  +T  + W    +  
Sbjct: 140 LARGVQQTLRLLLAGVIVGVVLGAAKDLITIASADILQAIQGFILGSTGLVGWSACAVMA 199

Query: 435 ATGSAALIMEGCMAAVTE 488
           A G+  L++   +A V +
Sbjct: 200 AVGAVCLLLGWALAPVLD 217