DK949268 |
Clone id |
TST38A01NGRL0005_I15 |
Library |
TST38 |
Length |
719 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0005_I15. 5' end sequence. |
Accession |
DK949268 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
- |
Sequence |
ATCGGCTGCCGCCATAGCCAGAGTTTGTAGGGATGCACACAGTATGGCAACACAACTCAT GAAAACATGTAATTATCCTATAATCTGCATAGCCATAACCATAGCCGAGAATGGTAGCGC ATTTAGTACCAATATTGCTGCTTTAAACTGAAGATATTTCTTCTTTCGCAATAGAGCAAA GCACCATGCGTGCCATATCCACCACCTTTCTTCTCCCCATTTTCTTCTCTCTCCCTCATC TCCTGCTTGCTGTGCAACAATCTTATCCATCTACTGAGCACACCATGGATTGCACCCACT ATCATGCGGATAACGCAGGCTATCTCTGTGAGCCCACGAACCCAACCTGCCAGACCCTTG TGTACTACCATGTTCAAAGTGGCCATTTCTCTTCTCTCAACACCATAGCCACACAGATTT TCAACACAACACCATCTTCAATCGCCGATGCAAGTGGGCTTCCTTCATCATATGATCCGA ATCTCCGCCCCGACGACGGACTCTATATCCCCATCACATGCCAATGCAATGGCAACTTCA CCTTCAAGCACACTGTCTATACNGTGAAGCCGGGTGACACCTTCTTCCAAATAGCCNATG TCACATTCGAGGGCTTGACGACATGCCAAGCTATGCAAGACGCGAATCCGAATGTGACGG TGACGAATTTGGAAGTAGGGCAGGAGCTTATCATCCCTCTTAGGTGTGCTTGTCCATCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O23006 |
Definition |
sp|O23006|LYM2_ARATH LysM domain-containing GPI-anchored protein 2 OS=Arabidopsis thaliana |
Align length |
133 |
Score (bit) |
64.7 |
E-value |
5.0e-10 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SNC9 |
Definition |
tr|A9SNC9|A9SNC9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
147 |
Score (bit) |
107.0 |
E-value |
1.0e-21 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK949268|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0005_I15, 5' (719 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9SNC9|A9SNC9_PHYPA Predicted protein OS=Physcomitrella paten... 107 1e-21 tr|A7PV21|A7PV21_VITVI Chromosome chr4 scaffold_32, whole genome... 107 1e-21 tr|B6ZN07|B6ZN07_GLYSO Nod factor receptor protein (Fragment) OS... 103 1e-20 tr|A9S3M6|A9S3M6_PHYPA Predicted protein (Fragment) OS=Physcomit... 103 1e-20 tr|B6ZN10|B6ZN10_GLYSO Nod factor receptor protein (Fragment) OS... 102 3e-20 tr|B6ZN36|B6ZN36_SOYBN Nod factor receptor protein (Fragment) OS... 101 4e-20 tr|B6ZN35|B6ZN35_SOYBN Nod factor receptor protein (Fragment) OS... 101 6e-20 tr|B6ZN33|B6ZN33_SOYBN Nod factor receptor protein (Fragment) OS... 101 6e-20 tr|B6ZN32|B6ZN32_SOYBN Nod factor receptor protein (Fragment) OS... 101 6e-20 tr|B6ZN26|B6ZN26_SOYBN Nod factor receptor protein (Fragment) OS... 101 6e-20 tr|B6ZN24|B6ZN24_SOYBN Nod factor receptor protein (Fragment) OS... 101 6e-20 tr|B6ZN19|B6ZN19_SOYBN Nod factor receptor protein (Fragment) OS... 101 6e-20 tr|B6ZN18|B6ZN18_SOYBN Nod factor receptor protein (Fragment) OS... 101 6e-20 tr|B6ZN17|B6ZN17_GLYSO Nod factor receptor protein (Fragment) OS... 101 6e-20 tr|B6ZN13|B6ZN13_GLYSO Nod factor receptor protein (Fragment) OS... 101 6e-20 tr|B6ZN12|B6ZN12_GLYSO Nod factor receptor protein (Fragment) OS... 101 6e-20 tr|B6ZN06|B6ZN06_GLYSO Nod factor receptor protein (Fragment) OS... 101 6e-20 tr|B6ZN04|B6ZN04_GLYSO Nod factor receptor protein (Fragment) OS... 101 6e-20 tr|B6ZN03|B6ZN03_GLYSO Nod factor receptor protein (Fragment) OS... 101 6e-20 tr|B6ZN02|B6ZN02_GLYSO Nod factor receptor protein (Fragment) OS... 101 6e-20 tr|A5YJV9|A5YJV9_SOYBN NFR5a OS=Glycine max GN=NFR5a PE=4 SV=1 101 6e-20 tr|B6ZN38|B6ZN38_SOYBN Nod factor receptor protein (Fragment) OS... 100 7e-20 tr|B6ZN29|B6ZN29_SOYBN Nod factor receptor protein (Fragment) OS... 100 7e-20 tr|B6ZN11|B6ZN11_GLYSO Nod factor receptor protein (Fragment) OS... 100 7e-20 tr|B6ZN08|B6ZN08_GLYSO Nod factor receptor protein (Fragment) OS... 100 7e-20 tr|B6ZN30|B6ZN30_SOYBN Nod factor receptor protein (Fragment) OS... 100 1e-19 tr|B6ZN27|B6ZN27_SOYBN Nod factor receptor protein (Fragment) OS... 100 1e-19 tr|B6ZN23|B6ZN23_SOYBN Nod factor receptor protein (Fragment) OS... 100 2e-19 tr|B6ZN14|B6ZN14_GLYSO Nod factor receptor protein (Fragment) OS... 99 3e-19 tr|B6ZN15|B6ZN15_GLYSO Nod factor receptor protein (Fragment) OS... 98 5e-19
>tr|A9SNC9|A9SNC9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_132645 PE=4 SV=1 Length = 658
Score = 107 bits (266), Expect = 1e-21 Identities = 58/147 (39%), Positives = 82/147 (55%) Frame = +3
Query: 279 HTMDCTHYHADNAGYLCEPTNPTCQTLVYYHVQSGHFSSLNTIATQIFNTTPSSIADASG 458 H + + + +GY C T CQT +Y +G S+L +I T +FNT+ IA AS Sbjct: 22 HPISAQQQYRNTSGYTCSGTT-RCQTYAFYRT-AGSQSTLTSIVT-LFNTSVEGIATASD 78
Query: 459 LPSSYDPNLRPDDGLYIPITCQCNGNFTFKHTVYTVKPGDTFFQIAXVTFEGLTTCQAMQ 638 + + D LYIP+ C C N T +K GDT ++ A T++GLTT +A+ Sbjct: 79 VDPNRTIPFNDRDPLYIPLNCSCFNNTFRALTSQQIKSGDTMYKFANGTYQGLTTWEAIS 138
Query: 639 DANPNVTVTNLEVGQELIIPLRCACPS 719 ANP V +TN+ VG L+IPLRCACP+ Sbjct: 139 VANPTVIITNMTVGDYLVIPLRCACPT 165
>tr|A7PV21|A7PV21_VITVI Chromosome chr4 scaffold_32, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00025017001 PE=4 SV=1 Length = 617
Score = 107 bits (266), Expect = 1e-21 Identities = 65/184 (35%), Positives = 103/184 (55%), Gaps = 10/184 (5%) Frame = +3
Query: 198 STTFLLPIFFSLPHL-------LLAVQQSYPSTEHTMDC-THYHADNAGYLCEPTNPTCQ 353 ST P FFS+ L L+ QQSY T DC + + GY C N TCQ Sbjct: 6 STKMASPSFFSVFTLSLICCFSLILAQQSYLGLG-TADCYNNNYTTVLGYTCNGVNTTCQ 64
Query: 354 TLVYYHVQSGHFSSLNTIATQIFNTTPSSIADASGLP--SSYDPNLRPDDGLYIPITCQC 527 T + + +S ++++++I+ + + PS +A + + +++D N + +P+ C C Sbjct: 65 TYLIFRSESP-YNNVSSIS-DLLASDPSQLAQINSVTETATFDTNKE----VIVPVNCSC 118
Query: 528 NGNFTFKHTVYTVKPGDTFFQIAXVTFEGLTTCQAMQDANPNVTVTNLEVGQELIIPLRC 707 +GN++ +T Y VK GD IA TF+GL+TCQA+ + NP+V+ TNL G + +PLRC Sbjct: 119 SGNYSQTNTSYVVKNGDYPLWIANNTFQGLSTCQALLNQNPSVSATNLNPGTSITVPLRC 178
Query: 708 ACPS 719 ACP+ Sbjct: 179 ACPT 182
>tr|B6ZN07|B6ZN07_GLYSO Nod factor receptor protein (Fragment) OS=Glycine soja GN=nfr5a PE=2 SV=1 Length = 327
Score = 103 bits (257), Expect = 1e-20 Identities = 53/126 (42%), Positives = 77/126 (61%) Frame = +3
Query: 342 PTCQTLVYYHVQSGHFSSLNTIATQIFNTTPSSIADASGLPSSYDPNLRPDDGLYIPITC 521 P+C+T V Y QS +F SL I+ IF+T+P SIA AS L D L D L +P+TC Sbjct: 42 PSCETYVTYIAQSPNFLSLTNISN-IFDTSPLSIARASNL-EPMDDKLVKDQVLLVPVTC 99
Query: 522 QCNGNFTFKHTVYTVKPGDTFFQIAXVTFEGLTTCQAMQDANPNVTVTNLEVGQELIIPL 701 C GN +F +T Y + GD+F+ +A ++E LT +A+ D NP ++ L +G +++ PL Sbjct: 100 GCTGNRSFANTSYEINQGDSFYFVATTSYENLTNWRAVMDLNPVLSPNKLPIGIQVVFPL 159
Query: 702 RCACPS 719 C CPS Sbjct: 160 FCKCPS 165
>tr|A9S3M6|A9S3M6_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_74139 PE=4 SV=1 Length = 439
Score = 103 bits (257), Expect = 1e-20 Identities = 61/147 (41%), Positives = 84/147 (57%), Gaps = 1/147 (0%) Frame = +3
Query: 282 TMDCTHYHADNAGYLCEPTNPTCQTLVYYHVQSGHFSSLNTIATQIFNTTPSSIADASGL 461 T + + + +GY C PTC+T Y Q SL +IAT +FNTT + IA+AS + Sbjct: 123 TANAQQSYNNRSGYACTG-RPTCETYALYRTQGSQ--SLQSIAT-LFNTTAAEIANASDI 178
Query: 462 PSSYDPNLRPD-DGLYIPITCQCNGNFTFKHTVYTVKPGDTFFQIAXVTFEGLTTCQAMQ 638 + NL D LYIP++C C G T V+ G+T + I+ T++GLTT +A+ Sbjct: 179 NPANSTNLLSDLTPLYIPLSCGCAGGIYQAPTSNVVEAGETMYIISNKTYQGLTTDEAIA 238
Query: 639 DANPNVTVTNLEVGQELIIPLRCACPS 719 ANP V T ++ GQ L IPLRCACPS Sbjct: 239 AANPTVVPTEMQPGQVLKIPLRCACPS 265
>tr|B6ZN10|B6ZN10_GLYSO Nod factor receptor protein (Fragment) OS=Glycine soja GN=nfr5a PE=2 SV=1 Length = 327
Score = 102 bits (253), Expect = 3e-20 Identities = 52/126 (41%), Positives = 76/126 (60%) Frame = +3
Query: 342 PTCQTLVYYHVQSGHFSSLNTIATQIFNTTPSSIADASGLPSSYDPNLRPDDGLYIPITC 521 P+C+T V Y QS +F SL I+ IF+T+P SIA AS L D L D L +P+TC Sbjct: 42 PSCETYVTYFAQSPNFLSLTNISN-IFDTSPLSIARASNL-EPMDDKLVKDQVLLVPVTC 99
Query: 522 QCNGNFTFKHTVYTVKPGDTFFQIAXVTFEGLTTCQAMQDANPNVTVTNLEVGQELIIPL 701 C GN +F + Y + GD+F+ +A ++E LT +A+ D NP ++ L +G +++ PL Sbjct: 100 GCTGNRSFANISYEINQGDSFYFVATTSYENLTNWRAVMDLNPVLSPNKLPIGIQVVFPL 159
Query: 702 RCACPS 719 C CPS Sbjct: 160 FCKCPS 165
>tr|B6ZN36|B6ZN36_SOYBN Nod factor receptor protein (Fragment) OS=Glycine max GN=nfr5a PE=2 SV=1 Length = 327
Score = 101 bits (252), Expect = 4e-20 Identities = 52/126 (41%), Positives = 77/126 (61%) Frame = +3
Query: 342 PTCQTLVYYHVQSGHFSSLNTIATQIFNTTPSSIADASGLPSSYDPNLRPDDGLYIPITC 521 P+C+T V Y QS +F SL I+ IF+T+P SIA AS L D L D L +P+TC Sbjct: 42 PSCETYVTYIAQSPNFLSLTNISN-IFDTSPLSIARASNL-EPMDDKLVKDQVLLVPVTC 99
Query: 522 QCNGNFTFKHTVYTVKPGDTFFQIAXVTFEGLTTCQAMQDANPNVTVTNLEVGQELIIPL 701 C GN +F + Y + GD+F+ +A ++E LT +A++D NP ++ L +G +++ PL Sbjct: 100 GCTGNRSFANISYEINQGDSFYFVATTSYENLTNWRAVRDLNPVLSPNKLPIGIQVVFPL 159
Query: 702 RCACPS 719 C CPS Sbjct: 160 FCKCPS 165
>tr|B6ZN35|B6ZN35_SOYBN Nod factor receptor protein (Fragment) OS=Glycine max GN=nfr5a PE=2 SV=1 Length = 327
Score = 101 bits (251), Expect = 6e-20 Identities = 52/126 (41%), Positives = 76/126 (60%) Frame = +3
Query: 342 PTCQTLVYYHVQSGHFSSLNTIATQIFNTTPSSIADASGLPSSYDPNLRPDDGLYIPITC 521 P+C+T V Y QS +F SL I+ IF+T+P SIA AS L D L D L +P+TC Sbjct: 42 PSCETYVTYIAQSPNFLSLTNISN-IFDTSPLSIARASNL-EPMDDKLVKDQVLLVPVTC 99
Query: 522 QCNGNFTFKHTVYTVKPGDTFFQIAXVTFEGLTTCQAMQDANPNVTVTNLEVGQELIIPL 701 C GN +F + Y + GD+F+ +A ++E LT +A+ D NP ++ L +G +++ PL Sbjct: 100 GCTGNRSFANISYEINQGDSFYFVATTSYENLTNWRAVMDLNPVLSPNKLPIGIQVVFPL 159
Query: 702 RCACPS 719 C CPS Sbjct: 160 FCKCPS 165
>tr|B6ZN33|B6ZN33_SOYBN Nod factor receptor protein (Fragment) OS=Glycine max GN=nfr5a PE=2 SV=1 Length = 327
Score = 101 bits (251), Expect = 6e-20 Identities = 52/126 (41%), Positives = 76/126 (60%) Frame = +3
Query: 342 PTCQTLVYYHVQSGHFSSLNTIATQIFNTTPSSIADASGLPSSYDPNLRPDDGLYIPITC 521 P+C+T V Y QS +F SL I+ IF+T+P SIA AS L D L D L +P+TC Sbjct: 42 PSCETYVTYIAQSPNFLSLTNISN-IFDTSPLSIARASNL-EPMDDKLVKDQVLLVPVTC 99
Query: 522 QCNGNFTFKHTVYTVKPGDTFFQIAXVTFEGLTTCQAMQDANPNVTVTNLEVGQELIIPL 701 C GN +F + Y + GD+F+ +A ++E LT +A+ D NP ++ L +G +++ PL Sbjct: 100 GCTGNRSFANISYEINQGDSFYFVATTSYENLTNWRAVMDLNPVLSPNKLPIGIQVVFPL 159
Query: 702 RCACPS 719 C CPS Sbjct: 160 FCKCPS 165
>tr|B6ZN32|B6ZN32_SOYBN Nod factor receptor protein (Fragment) OS=Glycine max GN=nfr5a PE=2 SV=1 Length = 327
Score = 101 bits (251), Expect = 6e-20 Identities = 52/126 (41%), Positives = 76/126 (60%) Frame = +3
Query: 342 PTCQTLVYYHVQSGHFSSLNTIATQIFNTTPSSIADASGLPSSYDPNLRPDDGLYIPITC 521 P+C+T V Y QS +F SL I+ IF+T+P SIA AS L D L D L +P+TC Sbjct: 42 PSCETYVTYIAQSPNFLSLTNISN-IFDTSPLSIARASNL-EPMDDKLVKDQVLLVPVTC 99
Query: 522 QCNGNFTFKHTVYTVKPGDTFFQIAXVTFEGLTTCQAMQDANPNVTVTNLEVGQELIIPL 701 C GN +F + Y + GD+F+ +A ++E LT +A+ D NP ++ L +G +++ PL Sbjct: 100 GCTGNRSFANISYEINQGDSFYFVATTSYENLTNWRAVMDLNPVLSPNKLPIGIQVVFPL 159
Query: 702 RCACPS 719 C CPS Sbjct: 160 FCKCPS 165
>tr|B6ZN26|B6ZN26_SOYBN Nod factor receptor protein (Fragment) OS=Glycine max GN=nfr5a PE=2 SV=1 Length = 327
Score = 101 bits (251), Expect = 6e-20 Identities = 52/126 (41%), Positives = 76/126 (60%) Frame = +3
Query: 342 PTCQTLVYYHVQSGHFSSLNTIATQIFNTTPSSIADASGLPSSYDPNLRPDDGLYIPITC 521 P+C+T V Y QS +F SL I+ IF+T+P SIA AS L D L D L +P+TC Sbjct: 42 PSCETYVTYIAQSPNFLSLTNISN-IFDTSPLSIARASNL-EPMDDKLVKDQVLLVPVTC 99
Query: 522 QCNGNFTFKHTVYTVKPGDTFFQIAXVTFEGLTTCQAMQDANPNVTVTNLEVGQELIIPL 701 C GN +F + Y + GD+F+ +A ++E LT +A+ D NP ++ L +G +++ PL Sbjct: 100 GCTGNRSFANISYEINQGDSFYFVATTSYENLTNWRAVMDLNPVLSPNKLPIGIQVVFPL 159
Query: 702 RCACPS 719 C CPS Sbjct: 160 FCKCPS 165
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